Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017324

Physical Location & Seq

Genomic Coordinates Forward (+)

4645447 .. 4647477

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAAACGTAGATCCAGCCACCGCCGGCAACCAGGACGCTGTGAAGACACCACACAGGTACGCAGCGTGGGGCCTCCTGTCCGATCCGGTTTCTCGTCGGATCAAAAACGTGACGGAGGGCCTCCGGGCCGAGTTCGGTGGTCCTGAGATCATGGTGCCCCATATACCCATTTTAGGGTCCATCATTATGACGGAGGAAGACGCCGTCAACACCTTCAGACTAGCCTGCGACGCCGTTGGTCCCATCCCCTGTAATGTCACTCGCGTTGCCACCAGTCCCTTCTATTACCAGTGTCTTCACCTCTTCATTGATCCAGACCGTGAGTACAAAAATTTAAACATCAGCTTTCGCAATTTCGGGAGACGTTTTAGTCGAATTTGTAGTATGCCACATCTGAGTCTCCTTTACGGGGAGCTGACAGATGAAGAGAAGAAAAGAGCTGAAGAAAAAGTTAGAGTCCTGGATGAGACCATTACCAGCCTCAATTTCACCATAGATCGCATTGCTTTGTACAAATGTAACGATGAAGACAGAACTCAACACTCTTGGGAGAAGATTCTTGAACTCCCCCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

194

Amino Acids

21.94

Weight (kDa)

5.76

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017324)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07730
malus_domestica	MD12G1206800.v1.1
prunus_persica	Prupe.6G314300_v2.0.a1
pyrus_communis	pycom12g19470
rosa_chinensis	RchiOBHm_Chr3g0457371
rosa_multiflora	Rmu_sc0005442.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421940
rosa_rugosa	Rorug03G0020200 Rorug03G0020300
rosa_samantha	Rh3AG080400 Rh3BG082200 Rh3CG082500
rosa_wichuraiana	Rw3G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	4 cut(s)	8, 80, 110, 308
AcsI	RAATTY	2 cut(s)	334, 378
AcuI	CTGAAG	2 cut(s)	202, 465
AcyI	GRCGYC	2 cut(s)	204, 234
AfaI	GTAC	3 cut(s)	62, 329, 515
AfiI	CCNNNNNNNGG	3 cut(s)	176, 177, 412
AgsI	TTSAA	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	33, 462
AjuI	GAANNNNNNNTTGG	1 cut(s)	558
AluBI	AGCT	3 cut(s)	348, 418, 443
AluI	AGCT	3 cut(s)	348, 418, 443
Alw26I	GTCTC	3 cut(s)	358, 407, 464
AlwI	GGATC	4 cut(s)	8, 80, 110, 308
AoxI	GGCC	3 cut(s)	73, 121, 129
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	334, 378
AspS9I	GGNCC	6 cut(s)	73, 121, 129, 143, 180, 242
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	293, 484
AvaII	GGWCC	3 cut(s)	143, 180, 242
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	157
BbsI	GAAGAC	4 cut(s)	53, 207, 290, 537
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	191, 254
BceAI	ACGGC	2 cut(s)	191, 221
BciT130I	CCWGG	2 cut(s)	35, 464
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	358, 407, 464
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	35, 128, 464
Bme18I	GGWCC	3 cut(s)	143, 180, 242
BmgT120I	GGNCC	6 cut(s)	73, 121, 129, 143, 180, 242
BmiI	GGNNCC	4 cut(s)	74, 159, 181, 244
BmrFI	CCNGG	3 cut(s)	35, 128, 464
BpiI	GAAGAC	4 cut(s)	53, 207, 290, 537
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	2 cut(s)	204, 234
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 177, 412
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	276, 292
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	35, 464
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	246, 472
BseLI	CCNNNNNNNGG	3 cut(s)	176, 177, 412
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	138, 389
BseNI	ACTGG	2 cut(s)	276, 292
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	75, 123, 131
BshNI	GGYRCC	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	27, 89, 127
BslFI	GGGAC	2 cut(s)	228, 264
BslI	CCNNNNNNNGG	3 cut(s)	176, 177, 412
BsmAI	GTCTC	3 cut(s)	358, 407, 464
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	228, 264
BsnI	GGCC	3 cut(s)	75, 123, 131
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	3 cut(s)	75, 123, 131
BspCNI	CTCAG	2 cut(s)	139, 390
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	4 cut(s)	74, 159, 181, 244
BspPI	GGATC	4 cut(s)	8, 80, 110, 308
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	276, 292
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
BssNI	GRCGYC	2 cut(s)	204, 234
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	35, 464
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	311, 423
BstACI	GRCGYC	2 cut(s)	204, 234
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	28, 229
BstDEI	CTNAG	2 cut(s)	147, 398
BstF5I	GGATG	2 cut(s)	246, 472
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	6 cut(s)	16, 88, 105, 153, 316, 502
BstMAI	GTCTC	3 cut(s)	358, 407, 464
BstMBI	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	35, 464
BstSCI	CCNGG	3 cut(s)	33, 126, 462
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	4 cut(s)	53, 207, 290, 537
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	75, 123, 131
BtsCI	GGATG	2 cut(s)	246, 472
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	28, 229
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	6 cut(s)	73, 121, 129, 143, 180, 242
CseI	GACGC	3 cut(s)	47, 212, 242
Csp6I	GTAC	3 cut(s)	61, 328, 514
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	20, 75, 123, 131, 227, 348, 418, 443, 483
CviKI_1	RGCY	9 cut(s)	20, 75, 123, 131, 227, 348, 418, 443, 483
CviQI	GTAC	3 cut(s)	61, 328, 514
DdeI	CTNAG	2 cut(s)	147, 398
DpnI	GATC	6 cut(s)	15, 87, 104, 152, 315, 501
DpnII	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
DraI	TTTAAA	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	311, 423
EarI	CTCTTC	2 cut(s)	311, 423
Eco130I	CCWWGG	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	3 cut(s)	143, 180, 242
Eco57I	CTGAAG	2 cut(s)	202, 465
EcoO109I	RGGNCCY	2 cut(s)	73, 121
EcoRII	CCWGG	2 cut(s)	33, 462
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	1 cut(s)	157
FaiI	YATR	6 cut(s)	155, 165, 167, 191, 389, 497
FaqI	GGGAC	2 cut(s)	228, 264
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	233, 479
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	75, 123, 131
HapII	CCGG	3 cut(s)	27, 89, 127
HgaI	GACGC	3 cut(s)	47, 212, 242
Hin1I	GRCGYC	2 cut(s)	204, 234
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	400, 459, 559
HpaII	CCGG	3 cut(s)	27, 89, 127
HphI	GGTGA	2 cut(s)	293, 484
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	85, 102, 221, 399
Hpy188III	TCNNGA	4 cut(s)	146, 317, 361, 563
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	102, 236
HpyAV	CCTTC	2 cut(s)	226, 292
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	3 cut(s)	9, 111, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	147, 398
HpySE526I	ACGT	3 cut(s)	9, 111, 367
Hsp92I	GRCGYC	2 cut(s)	204, 234
Hsp92II	CATG	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	3 cut(s)	9, 111, 367
MaeIII	GTNAC	3 cut(s)	112, 259, 521
MalI	GATC	6 cut(s)	15, 87, 104, 152, 315, 501
MboI	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
MboII	GAAGA	9 cut(s)	58, 212, 290, 298, 440, 445, 458, 542, 568
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	334, 355, 378, 487
MlyI	GAGTC	2 cut(s)	409, 468
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	86, 112, 134, 190, 314, 494
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	3 cut(s)	27, 89, 127
MspR9I	CCNGG	3 cut(s)	35, 128, 464
MvaI	CCWGG	2 cut(s)	35, 464
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	233
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	4 cut(s)	74, 159, 181, 244
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	112, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	2 cut(s)	408, 467
PpsI	GAGTC	2 cut(s)	408, 467
Psp6I	CCWGG	2 cut(s)	33, 462
PspGI	CCWGG	2 cut(s)	33, 462
PspN4I	GGNNCC	4 cut(s)	74, 159, 181, 244
PspPI	GGNCC	6 cut(s)	73, 121, 129, 143, 180, 242
PsuI	RGATCY	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	62, 329, 515
RsaNI	GTAC	3 cut(s)	61, 328, 514
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	6 cut(s)	13, 85, 102, 150, 313, 499
Sau96I	GGNCC	6 cut(s)	73, 121, 129, 143, 180, 242
SchI	GAGTC	2 cut(s)	409, 468
ScrFI	CCNGG	3 cut(s)	35, 128, 464
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	12, 62, 114, 218, 306, 350, 370, 420, 445
SinI	GGWCC	3 cut(s)	143, 180, 242
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	334, 355, 378, 487
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	33, 126, 462
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	3 cut(s)	12, 114, 370
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	334, 355, 378, 487
TatI	WGTACW	2 cut(s)	327, 513
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	112, 259
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	112, 259
TspDTI	ATGAA	3 cut(s)	298, 441, 543
TspGWI	ACGGA	2 cut(s)	131, 209
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	3 cut(s)	143, 180, 242
XapI	RAATTY	2 cut(s)	334, 378
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.