Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017324

Physical Location & Seq

Genomic Coordinates Forward (+)

28076790 .. 28078046

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G314300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAAACTCAGAAACAACCACAACAATTTCTTCAGCGCCAAACCCAGTTAGGCAGAAGGTGCGCACGTACGCGGCGTGGGCCGTCATACCAGATCACGTCTCGAACAGGATCAAGAAGGTGATGGAAGGCCTCCGCGACGAATTCGGTGGGCCCGAGATCACGCCCCACATCCCCGTTCTGGGGTCCATCCGCACCAGGGAAGATGACGTCATCAGAAACTTCAAAGAGGCCTGTGGGAAAAGCTCTTGCTTCCCATGTACAGTTGTGGACGTGCTCCCCGGTCCATTCTATTACCAAAATGTTTACCTCTTCATTCATCCGGATCAGGTAACTTATCCAATAAGAAATTTCACTGACCATTTCGACCAATTGGCCAGTATGCCCCACTTTAGCCTCCTGTATGGGGAGTTGATAGATGAAGAGAAGGAAAAAGCAAAAGAGAGAGCGATGGTTCTGGATGACGGCTTGGTTGGCCTCACTTTCACCATAACTCGTTTTGCATTGTACAAATGTAACAAGGACAGAACTCAACAATCTTGGGAGAAGATTGCTGAACACTCCCTCCCACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

192

Amino Acids

21.88

Weight (kDa)

6.07

Isoelectric Point (pI)

36.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017324)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07730
malus_domestica	MD12G1206800.v1.1
prunus_persica	Prupe.6G314300_v2.0.a1
pyrus_communis	pycom12g19470
rosa_chinensis	RchiOBHm_Chr3g0457371
rosa_multiflora	Rmu_sc0005442.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421940
rosa_rugosa	Rorug03G0020200 Rorug03G0020300
rosa_samantha	Rh3AG080400 Rh3BG082200 Rh3CG082500
rosa_wichuraiana	Rw3G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	65
AccII	CGCG	2 cut(s)	74, 138
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	3 cut(s)	74, 136, 193
AclWI	GGATC	2 cut(s)	119, 333
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	143, 349
AcuI	CTGAAG	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	71, 262, 509
AfiI	CCNNNNNNNGG	5 cut(s)	181, 182, 183, 199, 406
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	2 cut(s)	100, 274
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	1 cut(s)	549
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	119, 333
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	6 cut(s)	81, 130, 152, 231, 375, 475
ApaI	GGGCCC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	143, 349
AspLEI	GCGC	2 cut(s)	40, 66
AspS9I	GGNCC	5 cut(s)	81, 152, 153, 186, 284
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	133, 478
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	186, 284
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	3 cut(s)	118, 197, 445
BceAI	ACGGC	2 cut(s)	68, 481
BciT130I	CCWGG	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	199, 282
Bme18I	GGWCC	2 cut(s)	186, 284
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	2 cut(s)	100, 274
BmgT120I	GGNCC	5 cut(s)	81, 152, 153, 186, 284
BmiI	GGNNCC	2 cut(s)	154, 187
BmrFI	CCNGG	2 cut(s)	199, 282
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	198, 280
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 182, 183, 199, 406
Bse1I	ACTGG	2 cut(s)	47, 378
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	198, 280
BseGI	GGATG	4 cut(s)	171, 189, 319, 466
BseLI	CCNNNNNNNGG	5 cut(s)	181, 182, 183, 199, 406
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	47, 378
BseSI	GKGCMC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	74, 138
BshFI	GGCC	6 cut(s)	83, 132, 154, 233, 377, 477
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	282, 323
BsiWI	CGTACG	1 cut(s)	69
BslI	CCNNNNNNNGG	5 cut(s)	181, 182, 183, 199, 406
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	6 cut(s)	83, 132, 154, 233, 377, 477
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	156, 279
Bsp13I	TCCGGA	1 cut(s)	322
Bsp1407I	TGTACA	2 cut(s)	260, 507
Bsp143I	GATC	4 cut(s)	94, 111, 159, 325
BspACI	CCGC	3 cut(s)	74, 136, 193
BspANI	GGCC	6 cut(s)	83, 132, 154, 233, 377, 477
BspCNI	CTCAG	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	74, 138
BspLI	GGNNCC	2 cut(s)	154, 187
BspPI	GGATC	2 cut(s)	119, 333
BsrGI	TGTACA	2 cut(s)	260, 507
BsrI	ACTGG	2 cut(s)	47, 378
BssECI	CCNNGG	2 cut(s)	198, 280
BssMI	GATC	4 cut(s)	94, 111, 159, 325
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	317, 417
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstAUI	TGTACA	2 cut(s)	260, 507
BstBAI	YACGTR	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	171, 189, 319, 466
BstFNI	CGCG	2 cut(s)	74, 138
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 66
BstKTI	GATC	4 cut(s)	97, 114, 162, 328
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	94, 111, 159, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 80, 474
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	197, 280
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	2 cut(s)	74, 138
BsuRI	GGCC	6 cut(s)	83, 132, 154, 233, 377, 477
BtgZI	GCGATG	1 cut(s)	464
BtrI	CACGTC	2 cut(s)	100, 274
BtsCI	GGATG	4 cut(s)	171, 189, 319, 466
BtsIMutI	CAGTG	1 cut(s)	354
CfoI	GCGC	2 cut(s)	40, 66
Cfr13I	GGNCC	5 cut(s)	81, 152, 153, 186, 284
Csp6I	GTAC	3 cut(s)	70, 261, 508
CviAII	CATG	1 cut(s)	258
CviJI	RGCY	9 cut(s)	83, 132, 154, 233, 246, 377, 396, 468, 477
CviKI_1	RGCY	9 cut(s)	83, 132, 154, 233, 246, 377, 396, 468, 477
CviQI	GTAC	3 cut(s)	70, 261, 508
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	4 cut(s)	96, 113, 161, 327
DpnII	GATC	4 cut(s)	94, 111, 159, 325
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	317, 417
EarI	CTCTTC	2 cut(s)	317, 417
Eco147I	AGGCCT	2 cut(s)	132, 233
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	186, 284
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	1 cut(s)	261
FaiI	YATR	5 cut(s)	89, 259, 383, 405, 491
FatI	CATG	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	4 cut(s)	158, 176, 306, 473
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	75
FspAI	RTGCGCAY	1 cut(s)	65
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	2 cut(s)	39, 65
GluI	GCNGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	6 cut(s)	83, 132, 154, 233, 377, 477
HapII	CCGG	2 cut(s)	282, 323
HhaI	GCGC	2 cut(s)	40, 66
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	261
Hin6I	GCGC	2 cut(s)	38, 64
HinP1I	GCGC	2 cut(s)	38, 64
HpaII	CCGG	2 cut(s)	282, 323
HphI	GGTGA	2 cut(s)	133, 478
Hpy166II	GTNNAC	2 cut(s)	271, 307
Hpy188I	TCNGA	2 cut(s)	13, 218
Hpy188III	TCNNGA	4 cut(s)	103, 115, 323, 458
Hpy8I	GTNNAC	2 cut(s)	271, 307
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	52, 112, 122, 421
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	4 cut(s)	68, 99, 210, 273
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 80, 474
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	4 cut(s)	68, 99, 210, 273
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	261
HspAI	GCGC	2 cut(s)	38, 64
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	94, 111, 159, 325
LmnI	GCTCC	1 cut(s)	282
MaeII	ACGT	4 cut(s)	68, 99, 210, 273
MaeIII	GTNAC	2 cut(s)	331, 515
MalI	GATC	4 cut(s)	96, 113, 161, 327
MboI	GATC	4 cut(s)	94, 111, 159, 325
MboII	GAAGA	5 cut(s)	24, 215, 304, 434, 559
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	156, 279
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	27, 143, 349, 371
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	6 cut(s)	143, 223, 320, 407, 488, 575
Mox20I	TGGCCA	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	2 cut(s)	282, 323
MspR9I	CCNGG	2 cut(s)	199, 282
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	2 cut(s)	74, 138
MwoI	GCNNNNNNNGC	3 cut(s)	61, 80, 474
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	94, 111, 159, 325
NlaIII	CATG	1 cut(s)	261
NlaIV	GGNNCC	2 cut(s)	154, 187
NsbI	TGCGCA	1 cut(s)	65
PceI	AGGCCT	2 cut(s)	132, 233
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 153
Pfl23II	CGTACG	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	154, 187
PspOMI	GGGCCC	1 cut(s)	152
PspPI	GGNCC	5 cut(s)	81, 152, 153, 186, 284
RsaI	GTAC	3 cut(s)	71, 262, 509
RsaNI	GTAC	3 cut(s)	70, 261, 508
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	4 cut(s)	94, 111, 159, 325
Sau96I	GGNCC	5 cut(s)	81, 152, 153, 186, 284
ScrFI	CCNGG	2 cut(s)	199, 282
SduI	GDGCHC	2 cut(s)	156, 279
SetI	ASST	9 cut(s)	63, 71, 102, 123, 213, 248, 276, 312, 333
SinI	GGWCC	2 cut(s)	186, 284
Sse9I	AATT	4 cut(s)	27, 143, 349, 371
SseBI	AGGCCT	2 cut(s)	132, 233
SsiI	CCGC	3 cut(s)	74, 136, 193
StuI	AGGCCT	2 cut(s)	132, 233
StyD4I	CCNGG	2 cut(s)	197, 280
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	4 cut(s)	71, 102, 213, 276
TaqI	TCGA	2 cut(s)	104, 366
TasI	AATT	4 cut(s)	27, 143, 349, 371
TatI	WGTACW	2 cut(s)	260, 507
TauI	GCSGC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	361
TspDTI	ATGAA	3 cut(s)	304, 308, 435
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	186, 284
XapI	RAATTY	2 cut(s)	143, 349
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.