Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017324

Physical Location & Seq

Genomic Coordinates Reverse (-)

42963434 .. 42964777

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAAACGTAGAACCAACCACAGCCGGAGACCAAGACGCCGCCAAAACACCTCACAGGTACGTAGCGTGGGGCCTTCTGCCCGATCCGGTTTCCCGTCGGATCAAAAACGTGACGGAGGGCCTCCGGGCCGAGTTTGGTGGGCCGGAGATCATCGTGCCCCACATACCCATTTTAGGGTCCATCATTTTGACGGAGGAAGACGCCGTCAACACCTTCAGACAAGCCTGCCAGGCCATCGGTACCATCCCTTGCAAGGTCACTCACGTCGCCACCAGTCCCTTCTATTACCAGTGTGTTCACCTCTTCATTGATCCAGACCATGAGAATGAAGGTAATATGCTACATCTGAGTCTCCTTTATGGGGAGCTGACAGATGAAGAGAAGAAACGAGCTCAAGAAAAAGTTAGTGTTCTGGATGAGGCCATTACCAGCTTCAATTTCACCATAGATCGCCTTGCATTGTACAAATGTCACGATGAAGACAGAACTCAACAGTCTTGGGAGAAGATTCTTGAACTCCGCCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

177

Amino Acids

20.02

Weight (kDa)

5.2

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017324)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07730
malus_domestica	MD12G1206800.v1.1
prunus_persica	Prupe.6G314300_v2.0.a1
pyrus_communis	pycom12g19470
rosa_chinensis	RchiOBHm_Chr3g0457371
rosa_multiflora	Rmu_sc0005442.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421940
rosa_rugosa	Rorug03G0020200 Rorug03G0020300
rosa_samantha	Rh3AG080400 Rh3BG082200 Rh3CG082500
rosa_wichuraiana	Rw3G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	2 cut(s)	42, 523
AclWI	GGATC	3 cut(s)	80, 110, 308
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	39, 204
AfaI	GTAC	3 cut(s)	62, 244, 467
AfiI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 364
AgsI	TTSAA	2 cut(s)	439, 518
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	370, 395, 435
AluI	AGCT	3 cut(s)	370, 395, 435
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	24, 359
AlwI	GGATC	3 cut(s)	80, 110, 308
AoxI	GGCC	6 cut(s)	73, 121, 129, 143, 234, 423
Asp718I	GGTACC	1 cut(s)	242
AspS9I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	293, 436
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	207, 489
Bbv12I	GWGCWC	1 cut(s)	397
BccI	CCATC	3 cut(s)	191, 245, 254
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	24, 359
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	128, 233
Bme18I	GGWCC	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
BmiI	GGNNCC	3 cut(s)	74, 181, 244
BmrFI	CCNGG	2 cut(s)	128, 233
BpiI	GAAGAC	2 cut(s)	207, 489
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	39, 204
BsaI	GGTCTC	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 364
Bse1I	ACTGG	2 cut(s)	276, 292
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	246, 424
BseLI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 364
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	276, 292
BseSI	GKGCMC	1 cut(s)	162
BshFI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 425
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	27, 89, 127, 146
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 364
BsmAI	GTCTC	2 cut(s)	24, 359
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 425
Bso31I	GGTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	162, 397
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	5 cut(s)	85, 102, 150, 313, 451
BspACI	CCGC	2 cut(s)	42, 523
BspANI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 425
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	74, 181, 244
BspPI	GGATC	3 cut(s)	80, 110, 308
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	276, 292
BssMI	GATC	5 cut(s)	85, 102, 150, 313, 451
BssNI	GRCGYC	2 cut(s)	39, 204
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	2 cut(s)	311, 375
BstACI	GRCGYC	2 cut(s)	39, 204
BstAUI	TGTACA	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	246, 424
BstKTI	GATC	5 cut(s)	88, 105, 153, 316, 454
BstMAI	GTCTC	2 cut(s)	24, 359
BstMBI	GATC	5 cut(s)	85, 102, 150, 313, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	126, 231
BstSLI	GKGCMC	1 cut(s)	162
BstSNI	TACGTA	1 cut(s)	64
BstV2I	GAAGAC	2 cut(s)	207, 489
BsuRI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 425
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	246, 424
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
CseI	GACGC	2 cut(s)	47, 212
Csp6I	GTAC	3 cut(s)	61, 243, 466
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	3 cut(s)	61, 243, 466
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	5 cut(s)	87, 104, 152, 315, 453
DpnII	GATC	5 cut(s)	85, 102, 150, 313, 451
Eam1104I	CTCTTC	2 cut(s)	311, 375
EarI	CTCTTC	2 cut(s)	311, 375
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	1 cut(s)	395
Eco105I	TACGTA	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	395
EcoO109I	RGGNCCY	2 cut(s)	73, 121
EcoRII	CCWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	1 cut(s)	326
FaiI	YATR	5 cut(s)	167, 324, 341, 363, 449
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	233, 431
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	6 cut(s)	75, 123, 131, 145, 236, 425
HapII	CCGG	4 cut(s)	27, 89, 127, 146
HgaI	GACGC	2 cut(s)	47, 212
Hin1I	GRCGYC	2 cut(s)	39, 204
Hin1II	CATG	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	352, 511
HpaII	CCGG	4 cut(s)	27, 89, 127, 146
HphI	GGTGA	2 cut(s)	293, 436
Hpy166II	GTNNAC	2 cut(s)	211, 301
Hpy188I	TCNGA	3 cut(s)	102, 221, 351
Hpy188III	TCNNGA	5 cut(s)	317, 398, 416, 476, 515
Hpy8I	GTNNAC	2 cut(s)	211, 301
Hpy99I	CGWCG	2 cut(s)	102, 272
HpyAV	CCTTC	4 cut(s)	86, 226, 292, 326
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	4 cut(s)	9, 63, 111, 267
HpyCH4V	TGCA	2 cut(s)	255, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	4 cut(s)	9, 63, 111, 267
Hsp92I	GRCGYC	2 cut(s)	39, 204
Hsp92II	CATG	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	85, 102, 150, 313, 451
LmnI	GCTCC	1 cut(s)	367
MaeII	ACGT	4 cut(s)	9, 63, 111, 267
MaeIII	GTNAC	3 cut(s)	112, 259, 473
MalI	GATC	5 cut(s)	87, 104, 152, 315, 453
MboI	GATC	5 cut(s)	85, 102, 150, 313, 451
MboII	GAAGA	6 cut(s)	212, 298, 392, 397, 494, 520
MhlI	GDGCHC	2 cut(s)	162, 397
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	63, 112, 134, 190, 314, 415
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	4 cut(s)	27, 89, 127, 146
MspR9I	CCNGG	2 cut(s)	128, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	5 cut(s)	85, 102, 150, 313, 451
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	3 cut(s)	74, 181, 244
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	112, 259, 473
PfeI	GAWTC	1 cut(s)	511
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
Ppu21I	YACGTR	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	74, 181, 244
PspPI	GGNCC	5 cut(s)	73, 121, 129, 143, 180
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	62, 244, 467
RsaNI	GTAC	3 cut(s)	61, 243, 466
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	397
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	5 cut(s)	85, 102, 150, 313, 451
Sau96I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	128, 233
SduI	GDGCHC	2 cut(s)	162, 397
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	2 cut(s)	42, 523
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	126, 231
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	4 cut(s)	12, 66, 114, 270
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	511
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	3 cut(s)	112, 259, 473
Tsp45I	GTSAC	3 cut(s)	112, 259, 473
TspDTI	ATGAA	5 cut(s)	298, 345, 393, 495, 518
TspGWI	ACGGA	2 cut(s)	131, 209
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.