Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017324

Physical Location & Seq

Genomic Coordinates Reverse (-)

1615809 .. 1617205

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0020300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACTTGGTTTCATCAGCTCCAACCAACTCTCCCAGCAGCGCCTTTGAAACCCCATCTGCCTTGGCCATTAGTACTAGTAATGGTACAGGGGCAAACAACAGTAACAGTACCAGTACTACTGCTCTCATTACTTCTCCTAGCCGATATGAGAACCAGAAGAGGCGAGACTGGAACACCTTCTGCCAGTACCTCCGTAACCATCGTCCTCCGCTGTCCCTTCCCATGTGTAGCGGGGCCCACGTCCTGGAGTTCCTCCGGTACTTGGATCAGTTCGGAAAGACCAAGATCCACAACCACAGCTGCCCCTTCTTCGGGCTGCCAAACCCGCCCGCGCCCTGCCCCTGCCCGCTTCGACAGGCCTGGGGCAGCTTGGACGCTCTCATTGGGCGCCTCCGGGCAGCTTATGAGGAGCATGGAGGGCGTCCCGAGGCGAACCCTTTTGGGGCAAGAGCTGTGAGGCTGTACCTCCGCGAGGTTCGTGATTTCCAGTCCAAGGCGAGAGGAGTGAGCTATGACAAGAAGAGGAAGAGGCCCAAGCCAAGGCCAACACCAGTACCAACACCAACAACTAGTGCCACTACAACTAGTACCACTACTAGTGGCACGACCTCCTCGTCTGCAACTCTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

211

Amino Acids

23.0

Weight (kDa)

10.03

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	45 - 162	4.4e-65	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017324)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07730
malus_domestica	MD12G1206800.v1.1
prunus_persica	Prupe.6G314300_v2.0.a1
pyrus_communis	pycom12g19470
rosa_chinensis	RchiOBHm_Chr3g0457371
rosa_multiflora	Rmu_sc0005442.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421940
rosa_rugosa	Rorug03G0020200 Rorug03G0020300
rosa_samantha	Rh3AG080400 Rh3BG082200 Rh3CG082500
rosa_wichuraiana	Rw3G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	2 cut(s)	335, 474
AciI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
AclWI	GGATC	2 cut(s)	276, 283
AcoI	YGGCCR	1 cut(s)	66
AcyI	GRCGYC	2 cut(s)	391, 424
AfaI	GTAC	9 cut(s)	76, 88, 112, 118, 191, 263, 467, 558, 592
AfiI	CCNNNNNNNGG	8 cut(s)	247, 265, 314, 315, 445, 475, 496, 543
AgsI	TTSAA	1 cut(s)	50
AhlI	ACTAGT	4 cut(s)	77, 572, 587, 599
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	246, 362
AluBI	AGCT	6 cut(s)	20, 303, 372, 404, 455, 513
AluI	AGCT	6 cut(s)	20, 303, 372, 404, 455, 513
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	276, 283
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	5 cut(s)	66, 237, 360, 533, 545
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	5 cut(s)	39, 303, 319, 369, 401
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	3 cut(s)	44, 337, 393
AspS9I	GGNCC	3 cut(s)	237, 238, 534
AsuC2I	CCSGG	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	241
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BalI	TGGCCA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BccI	CCATC	2 cut(s)	64, 210
BciT130I	CCWGG	2 cut(s)	248, 364
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	4 cut(s)	77, 572, 587, 599
BfaI	CTAG	5 cut(s)	78, 141, 573, 588, 600
BfoI	RGCGCY	2 cut(s)	45, 394
BisI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
BlsI	GCNGC	5 cut(s)	41, 305, 321, 371, 403
BmcAI	AGTACT	2 cut(s)	76, 118
Bme1390I	CCNGG	3 cut(s)	248, 364, 398
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	237, 238, 534
BmiI	GGNNCC	3 cut(s)	238, 239, 392
BmrFI	CCNGG	3 cut(s)	248, 364, 398
BpmI	CTGGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	391, 424
BsaJI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	8 cut(s)	247, 265, 314, 315, 445, 475, 496, 543
Bse1I	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BseBI	CCWGG	2 cut(s)	248, 364
BseDI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BseLI	CCNNNNNNNGG	8 cut(s)	247, 265, 314, 315, 445, 475, 496, 543
BseNI	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BseRI	GAGGAG	3 cut(s)	425, 519, 604
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	335, 474
BshFI	GGCC	5 cut(s)	68, 239, 362, 535, 547
BshNI	GGYRCC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	2 cut(s)	259, 397
BslFI	GGGAC	2 cut(s)	202, 411
BslI	CCNNNNNNNGG	8 cut(s)	247, 265, 314, 315, 445, 475, 496, 543
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	202, 411
BsnI	GGCC	5 cut(s)	68, 239, 362, 535, 547
BsoBI	CYCGRG	1 cut(s)	428
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	268, 288
BspACI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
BspANI	GGCC	5 cut(s)	68, 239, 362, 535, 547
BspFNI	CGCG	2 cut(s)	335, 474
BspLI	GGNNCC	3 cut(s)	238, 239, 392
BspPI	GGATC	2 cut(s)	276, 283
BspT107I	GGYRCC	1 cut(s)	390
BsrI	ACTGG	5 cut(s)	114, 176, 187, 490, 554
BssECI	CCNNGG	5 cut(s)	63, 363, 429, 495, 542
BssMI	GATC	2 cut(s)	268, 288
BssNI	GRCGYC	2 cut(s)	391, 424
BssT1I	CCWWGG	3 cut(s)	63, 495, 542
Bst2UI	CCWGG	2 cut(s)	248, 364
Bst4CI	ACNGT	2 cut(s)	104, 110
Bst6I	CTCTTC	3 cut(s)	155, 518, 524
BstACI	GRCGYC	2 cut(s)	391, 424
BstC8I	GCNNGC	2 cut(s)	333, 350
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstFNI	CGCG	2 cut(s)	335, 474
BstH2I	RGCGCY	2 cut(s)	45, 394
BstHHI	GCGC	3 cut(s)	44, 337, 393
BstKTI	GATC	2 cut(s)	271, 291
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	268, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 421
BstNI	CCWGG	2 cut(s)	248, 364
BstSCI	CCNGG	3 cut(s)	246, 362, 396
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	2 cut(s)	335, 474
BstV1I	GCAGC	5 cut(s)	51, 290, 306, 381, 413
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	5 cut(s)	68, 239, 362, 535, 547
BtrI	CACGTC	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	333, 350
CfoI	GCGC	3 cut(s)	44, 337, 393
Cfr13I	GGNCC	3 cut(s)	237, 238, 534
CseI	GACGC	2 cut(s)	386, 413
Csp6I	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
CviAII	CATG	2 cut(s)	226, 416
CviQI	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
DinI	GGCGCC	1 cut(s)	392
DpnI	GATC	2 cut(s)	270, 290
DpnII	GATC	2 cut(s)	268, 288
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	3 cut(s)	155, 518, 524
EarI	CTCTTC	3 cut(s)	155, 518, 524
Eco130I	CCWWGG	3 cut(s)	63, 495, 542
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	246, 362
EcoT14I	CCWWGG	3 cut(s)	63, 495, 542
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	1 cut(s)	392
EheI	GGCGCC	1 cut(s)	392
ErhI	CCWWGG	3 cut(s)	63, 495, 542
FaeI	CATG	2 cut(s)	229, 419
FaiI	YATR	6 cut(s)	150, 227, 408, 417, 516, 634
FaqI	GGGAC	2 cut(s)	202, 411
FatI	CATG	2 cut(s)	225, 415
FauI	CCCGC	4 cut(s)	227, 336, 340, 357
Fnu4HI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
FspBI	CTAG	5 cut(s)	78, 141, 573, 588, 600
GlaI	GCGC	3 cut(s)	43, 336, 392
GluI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	2 cut(s)	45, 394
HaeIII	GGCC	5 cut(s)	68, 239, 362, 535, 547
HapII	CCGG	2 cut(s)	259, 397
HgaI	GACGC	2 cut(s)	386, 413
HhaI	GCGC	3 cut(s)	44, 337, 393
Hin1I	GRCGYC	2 cut(s)	391, 424
Hin1II	CATG	2 cut(s)	229, 419
Hin6I	GCGC	3 cut(s)	42, 335, 391
HinP1I	GCGC	3 cut(s)	42, 335, 391
HpaII	CCGG	2 cut(s)	259, 397
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	2 cut(s)	428, 482
HpyAV	CCTTC	3 cut(s)	190, 230, 319
HpyCH4III	ACNGT	2 cut(s)	104, 110
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 421
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	391, 424
Hsp92II	CATG	2 cut(s)	229, 419
HspAI	GCGC	3 cut(s)	42, 335, 391
KasI	GGCGCC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	268, 288
LmnI	GCTCC	2 cut(s)	25, 412
Lsp1109I	GCAGC	5 cut(s)	51, 290, 306, 381, 413
MaeI	CTAG	5 cut(s)	78, 141, 573, 588, 600
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	104, 197
MalI	GATC	2 cut(s)	270, 290
MboI	GATC	2 cut(s)	268, 288
MboII	GAAGA	4 cut(s)	172, 304, 535, 541
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	68
MluNI	TGGCCA	1 cut(s)	68
Mly113I	GGCGCC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	214, 303
MspI	CCGG	2 cut(s)	259, 397
MspR9I	CCNGG	3 cut(s)	248, 364, 398
MvaI	CCWGG	2 cut(s)	248, 364
MvnI	CGCG	2 cut(s)	335, 474
MwoI	GCNNNNNNNGC	2 cut(s)	328, 421
NarI	GGCGCC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	268, 288
NlaIII	CATG	2 cut(s)	229, 419
NlaIV	GGNNCC	3 cut(s)	238, 239, 392
PceI	AGGCCT	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	41, 305, 321, 371, 403
PluTI	GGCGCC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	246, 362
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	246, 362
PspN4I	GGNNCC	3 cut(s)	238, 239, 392
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	237, 238, 534
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	303
RsaI	GTAC	9 cut(s)	76, 88, 112, 118, 191, 263, 467, 558, 592
RsaNI	GTAC	9 cut(s)	75, 87, 111, 117, 190, 262, 466, 557, 591
SatI	GCNGC	5 cut(s)	40, 304, 320, 370, 402
Sau3AI	GATC	2 cut(s)	268, 288
Sau96I	GGNCC	3 cut(s)	237, 238, 534
ScaI	AGTACT	2 cut(s)	76, 118
ScrFI	CCNGG	3 cut(s)	248, 364, 398
SduI	GDGCHC	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	392
SpeI	ACTAGT	4 cut(s)	77, 572, 587, 599
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	6 cut(s)	212, 234, 329, 333, 350, 472
SspDI	GGCGCC	1 cut(s)	390
SspMI	CTAG	5 cut(s)	78, 141, 573, 588, 600
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	246, 362, 396
StyI	CCWWGG	3 cut(s)	63, 495, 542
TaaI	ACNGT	2 cut(s)	104, 110
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	355
TatI	WGTACW	2 cut(s)	74, 116
TseI	GCWGC	5 cut(s)	39, 303, 319, 369, 401
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	5 cut(s)	78, 141, 573, 588, 600
ZrmI	AGTACT	2 cut(s)	76, 118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.