Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017324

Physical Location & Seq

Genomic Coordinates Forward (+)

6472808 .. 6474168

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G006910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAAACGTAGAACCAACCACAGCCGGAGACCAAGACGCCGCCGAAACACCTCACAGGTACGTAGCGTGGGGCCTTCTGCCCGATCAGGTTTCCCGTCGGATCAAAAACGTGACGGAGGGCCTCCGGGCCGAGTTCGGTGGGCCGGAGATCATCGTGCCCCACATACCCATTTTAGGGTCCATCATTTTGACGGAGGAAGACGCCGTCAACACCTTCAGACAAGCCTGCCAGGCCATCGGTACCATCCCTTGCAAGGTCACTCACGTCGCCACCAGTCCCTTCTATTACCAGTGTGTTCACCTCTTCATTGATCCAGACCATGAGGTAGTTTATGACTTGTTCATATTTTACATGAGTAATATGCTACATCTGAGTCTCCTTTATGGGGAGCTGACAGATGAAGAGAAGAAACGAGCTCAAGAAAAAGTTAGTGTTCTGGATGAGGCCATTACCAGCTTCAATTTCACCATAGATCGCCTTGCATTGTACAAATGTCACGATGAAGACAGAACTCAACAGTCTTGGGAGAAGATTCTTGAACTCCGCCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

185

Amino Acids

21.13

Weight (kDa)

5.0

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017324)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07730
malus_domestica	MD12G1206800.v1.1
prunus_persica	Prupe.6G314300_v2.0.a1
pyrus_communis	pycom12g19470
rosa_chinensis	RchiOBHm_Chr3g0457371
rosa_multiflora	Rmu_sc0005442.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421940
rosa_rugosa	Rorug03G0020200 Rorug03G0020300
rosa_samantha	Rh3AG080400 Rh3BG082200 Rh3CG082500
rosa_wichuraiana	Rw3G006910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	2 cut(s)	42, 547
AclWI	GGATC	2 cut(s)	110, 308
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	39, 204
AfaI	GTAC	3 cut(s)	62, 244, 491
AfiI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 388
AgsI	TTSAA	2 cut(s)	463, 542
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	394, 419, 459
AluI	AGCT	3 cut(s)	394, 419, 459
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	24, 383
AlwI	GGATC	2 cut(s)	110, 308
AoxI	GGCC	6 cut(s)	73, 121, 129, 143, 234, 447
Asp718I	GGTACC	1 cut(s)	242
AspS9I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	293, 460
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	207, 513
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	3 cut(s)	191, 245, 254
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	24, 383
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	128, 233
Bme18I	GGWCC	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
BmiI	GGNNCC	3 cut(s)	74, 181, 244
BmrFI	CCNGG	2 cut(s)	128, 233
BpiI	GAAGAC	2 cut(s)	207, 513
BpuEI	CTTGAG	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	64
BsaHI	GRCGYC	2 cut(s)	39, 204
BsaI	GGTCTC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 388
Bse1I	ACTGG	2 cut(s)	276, 292
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	2 cut(s)	246, 448
BseLI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 388
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	276, 292
BseSI	GKGCMC	1 cut(s)	162
BshFI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 449
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	3 cut(s)	27, 127, 146
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	4 cut(s)	176, 177, 256, 388
BsmAI	GTCTC	2 cut(s)	24, 383
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 449
Bso31I	GGTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	162, 421
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	85, 102, 150, 313, 475
BspACI	CCGC	2 cut(s)	42, 547
BspANI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 449
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	74, 181, 244
BspPI	GGATC	2 cut(s)	110, 308
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	276, 292
BssMI	GATC	5 cut(s)	85, 102, 150, 313, 475
BssNI	GRCGYC	2 cut(s)	39, 204
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	2 cut(s)	311, 399
BstACI	GRCGYC	2 cut(s)	39, 204
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	246, 448
BstKTI	GATC	5 cut(s)	88, 105, 153, 316, 478
BstMAI	GTCTC	2 cut(s)	24, 383
BstMBI	GATC	5 cut(s)	85, 102, 150, 313, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	126, 231
BstSLI	GKGCMC	1 cut(s)	162
BstSNI	TACGTA	1 cut(s)	64
BstV2I	GAAGAC	2 cut(s)	207, 513
BsuRI	GGCC	6 cut(s)	75, 123, 131, 145, 236, 449
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	246, 448
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	229
Cfr13I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
CseI	GACGC	2 cut(s)	47, 212
Csp6I	GTAC	3 cut(s)	61, 243, 490
CviAII	CATG	2 cut(s)	323, 355
CviQI	GTAC	3 cut(s)	61, 243, 490
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	5 cut(s)	87, 104, 152, 315, 477
DpnII	GATC	5 cut(s)	85, 102, 150, 313, 475
Eam1104I	CTCTTC	2 cut(s)	311, 399
EarI	CTCTTC	2 cut(s)	311, 399
EciI	GGCGGA	1 cut(s)	536
Ecl136II	GAGCTC	1 cut(s)	419
Eco105I	TACGTA	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	419
EcoO109I	RGGNCCY	2 cut(s)	73, 121
EcoRII	CCWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	2 cut(s)	326, 358
FaiI	YATR	8 cut(s)	167, 324, 336, 347, 356, 365, 387, 473
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	322, 354
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	233, 455
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	6 cut(s)	75, 123, 131, 145, 236, 449
HapII	CCGG	3 cut(s)	27, 127, 146
HgaI	GACGC	2 cut(s)	47, 212
Hin1I	GRCGYC	2 cut(s)	39, 204
Hin1II	CATG	2 cut(s)	326, 358
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	376, 535
HpaII	CCGG	3 cut(s)	27, 127, 146
HphI	GGTGA	2 cut(s)	293, 460
Hpy166II	GTNNAC	2 cut(s)	211, 301
Hpy188I	TCNGA	3 cut(s)	102, 221, 375
Hpy188III	TCNNGA	5 cut(s)	317, 422, 440, 500, 539
Hpy8I	GTNNAC	2 cut(s)	211, 301
Hpy99I	CGWCG	2 cut(s)	102, 272
HpyAV	CCTTC	3 cut(s)	86, 226, 292
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	4 cut(s)	9, 63, 111, 267
HpyCH4V	TGCA	2 cut(s)	255, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	4 cut(s)	9, 63, 111, 267
Hsp92I	GRCGYC	2 cut(s)	39, 204
Hsp92II	CATG	2 cut(s)	326, 358
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	85, 102, 150, 313, 475
LmnI	GCTCC	1 cut(s)	391
MaeII	ACGT	4 cut(s)	9, 63, 111, 267
MaeIII	GTNAC	3 cut(s)	112, 259, 497
MalI	GATC	5 cut(s)	87, 104, 152, 315, 477
MboI	GATC	5 cut(s)	85, 102, 150, 313, 475
MboII	GAAGA	6 cut(s)	212, 298, 416, 421, 518, 544
MhlI	GDGCHC	2 cut(s)	162, 421
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	63, 112, 134, 190, 314, 319, 439
MspI	CCGG	3 cut(s)	27, 127, 146
MspR9I	CCNGG	2 cut(s)	128, 233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	5 cut(s)	85, 102, 150, 313, 475
NlaIII	CATG	2 cut(s)	326, 358
NlaIV	GGNNCC	3 cut(s)	74, 181, 244
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	112, 259, 497
PfeI	GAWTC	1 cut(s)	535
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
Ppu21I	YACGTR	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	74, 181, 244
PspPI	GGNCC	5 cut(s)	73, 121, 129, 143, 180
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	3 cut(s)	62, 244, 491
RsaNI	GTAC	3 cut(s)	61, 243, 490
SacI	GAGCTC	1 cut(s)	421
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	5 cut(s)	85, 102, 150, 313, 475
Sau96I	GGNCC	5 cut(s)	73, 121, 129, 143, 180
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	128, 233
SduI	GDGCHC	2 cut(s)	162, 421
SinI	GGWCC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	2 cut(s)	42, 547
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	126, 231
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	4 cut(s)	12, 66, 114, 270
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	535
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	3 cut(s)	112, 259, 497
Tsp45I	GTSAC	3 cut(s)	112, 259, 497
TspDTI	ATGAA	5 cut(s)	298, 334, 417, 519, 542
TspGWI	ACGGA	2 cut(s)	131, 209
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.