FvH4_6g08310

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016872
Physical Location & Seq
Forward (+)
4926434 .. 4927713
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08310.t1

Sequence Viewer

Length: 975 bp
ATGAGTAACTTACGGTTGTGTTTGATCTTCCTAACCATGTCTATGATGGTCTTCATGTCATCAGCCATAACCCCCAGAGTGGGTTTCTACAGAACAACTTGTCCTTCTGCGGAAGCAATTGTGAGAAAAGCTGTGAACAAGGCCGTGATGAAGAATCCTGGCATTGCTGCAGGCCTTATCAGAATGCATTTCCACGATTGCTTTGTTAGGGGTTGTGATGCGTCTGTCCTGCTTGATTCAACTCCGGGAAAGTTATCTGAAAAAGAACATCCGGCAAACAAACCAAGCTTAAGGGGATTTGAAGTGATCGATGAGGCAAAGAGGGAACTTGAAACTCTATGCCCGAGAACTGTGTCATGTGCAGACATTCTAGCATTCGCAGCTCGTGACGGTGCCCTAGCAGTTGGTGGCATAAGCTACCAAGTGCCTTCAGGGCGGCGTGACGGGAGAGTTTCACTGTTTGACGAGCCTTCCAATAATCTTCCTTCTCCTTCTTTGAATGCCAAGGAGCTAGCGGCCAGTTTCGCGCGCAAAGGCTTTAGCTTGGATGAAATGGTCACATTATCTGGGGCACATTCCATTGGTGTGTCACATTGTTCTTCCTTCTCGAACCGGTTGTATGCCTTCAATGAAACTCACACACAAGACCCTTCCTTGGATCCCAAGTTTGCTAGGGACTTGAAAGCCAAGTGTCCTCCATCCTCATCACCAAATAATGTGGTACAACTTGATGGTGTTACACCAAACAGGCTAGACAATAAGTACTACACAAACTTGATGAACCATCGTGGCCTATTTGCGTCAGATCAAACTCTTCTTAGCAGCCGTTCGACGGCAGGGATGGTGAGGAATAATGCTAGACTTGGTCCAGCTTGGGCTAAGAAGTTTGCATCCGCTATGGTGAAAATGGGTTCCATTGATGTCCTCACAGGAAGACAAGGTGAGATCAGAAAGAAGTGCGGGGTTGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.18

Weight (kDa)

9.47

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 286 1e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08310
malus_domestica MD12G1201400.v1.1
prunus_persica Prupe.6G306500_v2.0.a1
pyrus_communis pycom12g18750
rosa_chinensis RchiOBHm_Chr3g0458181
rosa_laevigata RLG00000025173
rosa_multiflora Rmu_sc0012767.1_g000002
rosa_roxburghii Rroxscaffold_6G00421230
rosa_rugosa Rorug03G0025400
rosa_samantha Rh3AG086200 Rh3BG088900 Rh3CG089500 Rh3DG089900
rosa_wichuraiana Rw3G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccII CGCG 2 cut(s) 527, 529
AciI CCGC 5 cut(s) 110, 436, 515, 894, 960
AclWI GGATC 2 cut(s) 653, 666
AcoI YGGCCR 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 723, 764
AfiI CCNNNNNNNGG 4 cut(s) 79, 80, 655, 832
AflII CTTAAG 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 612
AgsI TTSAA 6 cut(s) 240, 302, 332, 499, 628, 682
AjnI CCWGG 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 85, 117
AluBI AGCT 7 cut(s) 131, 288, 383, 417, 511, 543, 872
AluI AGCT 7 cut(s) 131, 288, 383, 417, 511, 543, 872
AlwI GGATC 2 cut(s) 653, 666
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 4 cut(s) 141, 172, 516, 790
ApeKI GCWGC 3 cut(s) 167, 380, 822
AsiGI ACCGGT 1 cut(s) 612
AspLEI GCGC 2 cut(s) 529, 531
AspS9I GGNCC 1 cut(s) 866
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 699, 856, 913, 953
AsuNHI GCTAGC 1 cut(s) 511
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 866
BaeGI GKGCMC 2 cut(s) 397, 574
BamHI GGATCC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 392
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 43, 940
BbvI GCAGC 3 cut(s) 154, 392, 834
BccI CCATC 5 cut(s) 40, 706, 725, 792, 835
BceAI ACGGC 3 cut(s) 128, 810, 849
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 246
BfaI CTAG 6 cut(s) 371, 398, 512, 672, 752, 858
BfmI CTRYAG 2 cut(s) 88, 168
BfrI CTTAAG 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 433
BisI GCNGC 5 cut(s) 168, 381, 437, 516, 823
BlsI GCNGC 5 cut(s) 169, 382, 438, 517, 824
BmcAI AGTACT 1 cut(s) 764
Bme1390I CCNGG 2 cut(s) 159, 246
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 3 cut(s) 394, 660, 913
BmrFI CCNGG 2 cut(s) 159, 246
BmsI GCATC 2 cut(s) 208, 899
BmtI GCTAGC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 43, 940
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 504, 654
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 80, 655, 832
Bse118I RCCGGY 1 cut(s) 612
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 504, 654
BseGI GGATG 5 cut(s) 268, 553, 698, 846, 890
BseLI CCNNNNNNNGG 4 cut(s) 79, 80, 655, 832
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 519
BsePI GCGCGC 1 cut(s) 527
BseSI GKGCMC 2 cut(s) 397, 574
BseXI GCAGC 3 cut(s) 154, 392, 834
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 2 cut(s) 527, 529
BshFI GGCC 4 cut(s) 143, 174, 518, 792
BshNI GGYRCC 1 cut(s) 392
BshTI ACCGGT 1 cut(s) 612
BshVI ATCGAT 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 3 cut(s) 245, 272, 613
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 4 cut(s) 79, 80, 655, 832
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 3 cut(s) 189, 374, 505
BsnI GGCC 4 cut(s) 143, 174, 518, 792
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 397, 574
Bsp143I GATC 5 cut(s) 24, 306, 658, 805, 945
BspACI CCGC 5 cut(s) 110, 436, 515, 894, 960
BspANI GGCC 4 cut(s) 143, 174, 518, 792
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 2 cut(s) 527, 529
BspLI GGNNCC 3 cut(s) 394, 660, 913
BspMAI CTGCAG 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 515
BspPI GGATC 2 cut(s) 653, 666
BspT107I GGYRCC 1 cut(s) 392
BspTI CTTAAG 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 612
BsrI ACTGG 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 504, 654
BssHII GCGCGC 1 cut(s) 527
BssMI GATC 5 cut(s) 24, 306, 658, 805, 945
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 504, 654
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 4 cut(s) 15, 352, 392, 459
Bst6I CTCTTC 1 cut(s) 819
BstAFI CTTAAG 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 172, 513, 529
BstDEI CTNAG 2 cut(s) 818, 879
BstF5I GGATG 5 cut(s) 268, 553, 698, 846, 890
BstFNI CGCG 2 cut(s) 527, 529
BstHHI GCGC 2 cut(s) 529, 531
BstKTI GATC 5 cut(s) 27, 309, 661, 808, 948
BstMBI GATC 5 cut(s) 24, 306, 658, 805, 945
BstMWI GCNNNNNNNGC 3 cut(s) 380, 433, 524
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 157, 244
BstSFI CTRYAG 2 cut(s) 88, 168
BstSLI GKGCMC 2 cut(s) 397, 574
BstUI CGCG 2 cut(s) 527, 529
BstV1I GCAGC 3 cut(s) 154, 392, 834
BstV2I GAAGAC 2 cut(s) 43, 940
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 4 cut(s) 143, 174, 518, 792
BsuTUI ATCGAT 1 cut(s) 309
BtsCI GGATG 5 cut(s) 268, 553, 698, 846, 890
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 172, 513, 529
CfoI GCGC 2 cut(s) 529, 531
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 866
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 2 cut(s) 210, 789
Csp6I GTAC 2 cut(s) 722, 763
CspAI ACCGGT 1 cut(s) 612
CspCI CAANNNNNGTGG 2 cut(s) 699, 734
CviAII CATG 3 cut(s) 37, 55, 357
CviQI GTAC 2 cut(s) 722, 763
DdeI CTNAG 2 cut(s) 818, 879
DpnI GATC 5 cut(s) 26, 308, 660, 807, 947
DpnII GATC 5 cut(s) 24, 306, 658, 805, 945
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 504, 654
Eco147I AGGCCT 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 504, 654
EcoT22I ATGCAT 1 cut(s) 189
ErhI CCWWGG 2 cut(s) 504, 654
FaeI CATG 3 cut(s) 40, 58, 360
FaiI YATR 9 cut(s) 38, 44, 56, 68, 340, 358, 413, 621, 899
FaqI GGGAC 1 cut(s) 689
FatI CATG 3 cut(s) 36, 54, 356
FauI CCCGC 1 cut(s) 953
Fnu4HI GCNGC 5 cut(s) 168, 381, 437, 516, 823
FokI GGATG 5 cut(s) 255, 560, 685, 853, 877
Fsp4HI GCNGC 5 cut(s) 168, 381, 437, 516, 823
FspBI CTAG 6 cut(s) 371, 398, 512, 672, 752, 858
GlaI GCGC 2 cut(s) 528, 530
GluI GCNGC 5 cut(s) 168, 381, 437, 516, 823
HaeIII GGCC 4 cut(s) 143, 174, 518, 792
HapII CCGG 3 cut(s) 245, 272, 613
HgaI GACGC 2 cut(s) 210, 789
HhaI GCGC 2 cut(s) 529, 531
Hin1II CATG 3 cut(s) 40, 58, 360
Hin6I GCGC 2 cut(s) 527, 529
HinP1I GCGC 2 cut(s) 527, 529
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 154, 236
HpaII CCGG 3 cut(s) 245, 272, 613
HphI GGTGA 4 cut(s) 699, 856, 913, 953
Hpy166II GTNNAC 2 cut(s) 136, 970
Hpy188I TCNGA 4 cut(s) 182, 259, 805, 950
Hpy188III TCNNGA 2 cut(s) 386, 607
Hpy8I GTNNAC 2 cut(s) 136, 970
Hpy99I CGWCG 1 cut(s) 835
HpyAV CCTTC 8 cut(s) 114, 438, 480, 495, 501, 613, 634, 660
HpyCH4III ACNGT 4 cut(s) 15, 352, 392, 459
HpyCH4V TGCA 4 cut(s) 170, 187, 362, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 433, 524
HpyF3I CTNAG 2 cut(s) 818, 879
Hsp92II CATG 3 cut(s) 40, 58, 360
HspAI GCGC 2 cut(s) 527, 529
Kzo9I GATC 5 cut(s) 24, 306, 658, 805, 945
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 3 cut(s) 154, 392, 834
LweI GCATC 2 cut(s) 208, 899
MaeI CTAG 6 cut(s) 371, 398, 512, 672, 752, 858
MaeIII GTNAC 6 cut(s) 5, 386, 440, 556, 588, 736
MalI GATC 5 cut(s) 26, 308, 660, 807, 947
MboI GATC 5 cut(s) 24, 306, 658, 805, 945
MboII GAAGA 7 cut(s) 19, 43, 163, 473, 591, 806, 945
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 397, 574
MluCI AATT 1 cut(s) 117
MnlI CCTC 6 cut(s) 307, 315, 705, 712, 840, 935
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 41, 584
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 3 cut(s) 245, 272, 613
MspR9I CCNGG 2 cut(s) 159, 246
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 3 cut(s) 189, 374, 505
MvaI CCWGG 1 cut(s) 159
MvnI CGCG 2 cut(s) 527, 529
MwoI GCNNNNNNNGC 3 cut(s) 380, 433, 524
NciI CCSGG 1 cut(s) 246
NdeII GATC 5 cut(s) 24, 306, 658, 805, 945
NheI GCTAGC 1 cut(s) 511
NlaIII CATG 3 cut(s) 40, 58, 360
NlaIV GGNNCC 3 cut(s) 394, 660, 913
NmuCI GTSAC 4 cut(s) 386, 440, 556, 588
NsiI ATGCAT 1 cut(s) 189
PauI GCGCGC 1 cut(s) 527
PceI AGGCCT 1 cut(s) 174
PctI GAATGC 3 cut(s) 189, 374, 505
PfeI GAWTC 2 cut(s) 154, 236
PflFI GACNNNGTC 1 cut(s) 864
PfoI TCCNGGA 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 612
PkrI GCNGC 5 cut(s) 169, 382, 438, 517, 824
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 394, 660, 913
PspPI GGNCC 1 cut(s) 866
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 1 cut(s) 658
PsyI GACNNNGTC 1 cut(s) 864
PteI GCGCGC 1 cut(s) 527
RsaI GTAC 2 cut(s) 723, 764
RsaNI GTAC 2 cut(s) 722, 763
RseI CAYNNNNRTG 2 cut(s) 41, 584
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 5 cut(s) 168, 381, 437, 516, 823
Sau3AI GATC 5 cut(s) 24, 306, 658, 805, 945
Sau96I GGNCC 1 cut(s) 866
ScaI AGTACT 1 cut(s) 764
ScrFI CCNGG 2 cut(s) 159, 246
SduI GDGCHC 2 cut(s) 397, 574
SetI ASST 8 cut(s) 133, 290, 385, 419, 513, 545, 874, 943
SfaNI GCATC 2 cut(s) 208, 899
SfcI CTRYAG 2 cut(s) 88, 168
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 2 cut(s) 41, 584
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 5 cut(s) 110, 436, 515, 894, 960
SspMI CTAG 6 cut(s) 371, 398, 512, 672, 752, 858
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 157, 244
StyI CCWWGG 2 cut(s) 504, 654
TaaI ACNGT 4 cut(s) 15, 352, 392, 459
TaqI TCGA 3 cut(s) 309, 608, 830
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 439, 518
TfiI GAWTC 2 cut(s) 154, 236
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 4 cut(s) 386, 440, 556, 588
TseI GCWGC 3 cut(s) 167, 380, 822
Tsp45I GTSAC 4 cut(s) 386, 440, 556, 588
TspDTI ATGAA 5 cut(s) 43, 164, 564, 645, 794
TspRI CASTG 1 cut(s) 462
Tth111I GACNNNGTC 1 cut(s) 864
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 6 cut(s) 371, 398, 512, 672, 752, 858
ZrmI AGTACT 1 cut(s) 764
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.