RchiOBHm_Chr3g0458181

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016872
Physical Location & Seq
Forward (+)
6954186 .. 6955267
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42488

Sequence Viewer

Length: 981 bp
ATGAGTAACTCAATGTTAAGGTTGTGCTTGATCTTCCTAACCATGTCTATGATGGTCTTCATGTCATCAGCCATAACCCCCAGAGTTGGTTTCTATAGAACAAGTTGTCCTTCTGCAGAAGCAATTGTGAGAAAAGCTGTACACAAAGCCGTGGCGAAGAATCCTGGCATTGCTGCTGGCCTTATCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTCCTACTTGATTCAACTCCTGGAAAGCTATCTGAAAAAGAACATCCGGCAAACAACCCAAGCTTAAGAGGCTTTGAAGTGATCGATCAGGCAAAGGCGGAACTTGAATCTCTATGCCCGAGAACTGTGTCATGTGCTGACATTCTTGCATTCGCAGCTCGTGACGGTGCCTTGGCAGTTGGTGGCATAAACTACCAAGTGCCTTCAGGGAGGCGTGATGGGAGAGTTTCATTATTTGACGACCCTTCCCAAGATCTTCCTTCTCCTTCTTCGAATGCCAAGGAGCTCGGGGATAGTTTTGCACCCAGCAAAGGCTTTAGCTTGGATGAAATGGTTACATTATCTGGGGCGCATTCCATTGGTGTGTCACATTGTTCTTCCTTCACGAACCGCTTGTATTCCTTCAATAAAACTCACCCACAAGACCCTTCCTTGGATCCCAAGTTTGCTAGGGACTTGAAAGCCAAGTGTCCTCCATCCTCATCAAACAATGTAGTCCAACTTGATGGTCTTACACCAAACAGGCTTGACAATAAGTACTACACCAACTTGATGAACCATCGTGGCCTATTTGAGTCGGATCAAACTCTTCTTAGCAGCCATTCAACGGCGGGGATGGTGAGGAATAATGCTAGACTTGGTCCAGCTTGGGCTAAGAATTTTGCATCCGCTATGGTGAAAATGGGTTCCATTGATATCCTCACAGGAAGACAGGGTGAGATCAGAAAAAAGTGCAGGGTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

326

Amino Acids

35.37

Weight (kDa)

9.15

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 288 1.6e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08310
malus_domestica MD12G1201400.v1.1
prunus_persica Prupe.6G306500_v2.0.a1
pyrus_communis pycom12g18750
rosa_chinensis RchiOBHm_Chr3g0458181
rosa_laevigata RLG00000025173
rosa_multiflora Rmu_sc0012767.1_g000002
rosa_roxburghii Rroxscaffold_6G00421230
rosa_rugosa Rorug03G0025400
rosa_samantha Rh3AG086200 Rh3BG088900 Rh3CG089500 Rh3DG089900
rosa_wichuraiana Rw3G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 4 cut(s) 329, 622, 842, 900
AclWI GGATC 3 cut(s) 662, 675, 819
AcsI RAATTY 1 cut(s) 889
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 141, 770
AfiI CCNNNNNNNGG 4 cut(s) 86, 542, 664, 838
AflII CTTAAG 1 cut(s) 295
AgsI TTSAA 6 cut(s) 246, 308, 338, 637, 691, 837
AjnI CCWGG 2 cut(s) 163, 250
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 7 cut(s) 137, 259, 294, 389, 517, 552, 878
AluI AGCT 7 cut(s) 137, 259, 294, 389, 517, 552, 878
Alw21I GWGCWC 1 cut(s) 519
AlwI GGATC 3 cut(s) 662, 675, 819
Ama87I CYCGRG 2 cut(s) 349, 518
AoxI GGCC 2 cut(s) 178, 796
ApeKI GCWGC 3 cut(s) 173, 386, 828
ApoI RAATTY 1 cut(s) 889
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 1 cut(s) 872
AsuHPI GGTGA 4 cut(s) 638, 862, 919, 959
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 2 cut(s) 349, 518
AvaII GGWCC 1 cut(s) 872
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 519
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 2 cut(s) 49, 946
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 160, 398, 840
BccI CCATC 6 cut(s) 46, 443, 715, 731, 798, 841
BceAI ACGGC 2 cut(s) 134, 855
BciT130I CCWGG 2 cut(s) 165, 252
BfaI CTAG 3 cut(s) 681, 864, 979
BfmI CTRYAG 2 cut(s) 94, 114
BfrI CTTAAG 1 cut(s) 295
BglII AGATCT 1 cut(s) 484
BisI GCNGC 3 cut(s) 174, 387, 829
BlsI GCNGC 3 cut(s) 175, 388, 830
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 2 cut(s) 165, 252
Bme18I GGWCC 1 cut(s) 872
BmeT110I CYCGRG 2 cut(s) 349, 518
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 3 cut(s) 400, 669, 919
BmrFI CCNGG 2 cut(s) 165, 252
BmsI GCATC 3 cut(s) 214, 236, 905
BpiI GAAGAC 2 cut(s) 49, 946
Bpu14I TTCGAA 1 cut(s) 503
Bsa29I ATCGAT 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 150, 402, 510, 663
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 542, 664, 838
Bse3DI GCAATG 1 cut(s) 168
BseBI CCWGG 2 cut(s) 165, 252
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 150, 402, 510, 663
BseGI GGATG 5 cut(s) 274, 562, 707, 852, 896
BseLI CCNNNNNNNGG 4 cut(s) 86, 542, 664, 838
BseMI GCAATG 1 cut(s) 168
BseXI GCAGC 3 cut(s) 160, 398, 840
BseYI CCCAGC 1 cut(s) 536
BshFI GGCC 2 cut(s) 180, 798
BshNI GGYRCC 1 cut(s) 398
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 2 cut(s) 349, 518
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 4 cut(s) 86, 542, 664, 838
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 4 cut(s) 195, 380, 511, 583
BsnI GGCC 2 cut(s) 180, 798
BsoBI CYCGRG 2 cut(s) 349, 518
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
BspACI CCGC 4 cut(s) 329, 622, 842, 900
BspANI GGCC 2 cut(s) 180, 798
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 400, 669, 919
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 662, 675, 819
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 139
BssECI CCNNGG 4 cut(s) 150, 402, 510, 663
BssMI GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 3 cut(s) 402, 510, 663
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 165, 252
Bst4CI ACNGT 2 cut(s) 358, 398
Bst6I CTCTTC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 824, 885
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 5 cut(s) 274, 562, 707, 852, 896
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 7 cut(s) 33, 315, 319, 487, 670, 814, 954
BstMBI GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
BstMWI GCNNNNNNNGC 2 cut(s) 300, 386
BstNI CCWGG 2 cut(s) 165, 252
BstSCI CCNGG 2 cut(s) 163, 250
BstSFI CTRYAG 2 cut(s) 94, 114
BstV1I GCAGC 3 cut(s) 160, 398, 840
BstV2I GAAGAC 2 cut(s) 49, 946
BstX2I RGATCY 2 cut(s) 484, 667
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 2 cut(s) 484, 667
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 2 cut(s) 180, 798
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 5 cut(s) 274, 562, 707, 852, 896
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 872
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 2 cut(s) 140, 769
CviAII CATG 4 cut(s) 43, 61, 200, 363
CviQI GTAC 2 cut(s) 140, 769
DdeI CTNAG 2 cut(s) 824, 885
DpnI GATC 7 cut(s) 32, 314, 318, 486, 669, 813, 953
DpnII GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
Eam1104I CTCTTC 1 cut(s) 825
EarI CTCTTC 1 cut(s) 825
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 402, 510, 663
Eco24I GRGCYC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 872
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 2 cut(s) 349, 518
EcoICRI GAGCTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 163, 250
EcoRV GATATC 1 cut(s) 928
EcoT14I CCWWGG 3 cut(s) 402, 510, 663
EcoT22I ATGCAT 2 cut(s) 195, 229
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 3 cut(s) 402, 510, 663
FaeI CATG 4 cut(s) 46, 64, 203, 366
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 1 cut(s) 698
FatI CATG 4 cut(s) 42, 60, 199, 362
FauI CCCGC 1 cut(s) 835
Fnu4HI GCNGC 3 cut(s) 174, 387, 829
FokI GGATG 5 cut(s) 261, 569, 694, 859, 883
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 174, 387, 829
FspBI CTAG 3 cut(s) 681, 864, 979
GlaI GCGC 1 cut(s) 582
GluI GCNGC 3 cut(s) 174, 387, 829
GsaI CCCAGC 1 cut(s) 540
HaeIII GGCC 2 cut(s) 180, 798
HapII CCGG 1 cut(s) 278
HhaI GCGC 1 cut(s) 583
Hin1II CATG 4 cut(s) 46, 64, 203, 366
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 4 cut(s) 160, 242, 338, 806
HpaII CCGG 1 cut(s) 278
HphI GGTGA 4 cut(s) 638, 862, 919, 959
Hpy166II GTNNAC 2 cut(s) 142, 976
Hpy188I TCNGA 4 cut(s) 188, 265, 811, 956
Hpy188III TCNNGA 2 cut(s) 392, 616
Hpy8I GTNNAC 2 cut(s) 142, 976
HpyAV CCTTC 8 cut(s) 120, 444, 486, 501, 507, 622, 643, 669
HpyCH4III ACNGT 2 cut(s) 358, 398
HpyCH4V TGCA 7 cut(s) 116, 193, 227, 380, 533, 896, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 386
HpyF3I CTNAG 2 cut(s) 824, 885
Hsp92II CATG 4 cut(s) 46, 64, 203, 366
HspAI GCGC 1 cut(s) 581
Kzo9I GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 3 cut(s) 160, 398, 840
LweI GCATC 3 cut(s) 214, 236, 905
MaeI CTAG 3 cut(s) 681, 864, 979
MaeIII GTNAC 4 cut(s) 5, 392, 565, 597
MalI GATC 7 cut(s) 32, 314, 318, 486, 669, 813, 953
MboI GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
MboII GAAGA 8 cut(s) 25, 49, 169, 479, 492, 600, 812, 951
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 2 cut(s) 484, 667
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 2 cut(s) 123, 889
MlyI GAGTC 1 cut(s) 815
MmeI TCCRAC 2 cut(s) 754, 789
MnlI CCTC 6 cut(s) 293, 435, 714, 721, 846, 941
Mph1103I ATGCAT 2 cut(s) 195, 229
MseI TTAA 2 cut(s) 17, 296
MslI CAYNNNNRTG 3 cut(s) 47, 198, 593
MspCI CTTAAG 1 cut(s) 295
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 2 cut(s) 165, 252
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 4 cut(s) 195, 380, 511, 583
MvaI CCWGG 2 cut(s) 165, 252
MwoI GCNNNNNNNGC 2 cut(s) 300, 386
NdeII GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
NlaIII CATG 4 cut(s) 46, 64, 203, 366
NlaIV GGNNCC 3 cut(s) 400, 669, 919
NmuCI GTSAC 2 cut(s) 392, 597
NsiI ATGCAT 2 cut(s) 195, 229
NspV TTCGAA 1 cut(s) 503
PctI GAATGC 4 cut(s) 195, 380, 511, 583
PfeI GAWTC 3 cut(s) 160, 242, 338
PflFI GACNNNGTC 1 cut(s) 870
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 3 cut(s) 175, 388, 830
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
Psp124BI GAGCTC 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 163, 250
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 2 cut(s) 163, 250
PspN4I GGNNCC 3 cut(s) 400, 669, 919
PspPI GGNCC 1 cut(s) 872
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 2 cut(s) 484, 667
PsyI GACNNNGTC 1 cut(s) 870
RsaI GTAC 2 cut(s) 141, 770
RsaNI GTAC 2 cut(s) 140, 769
RseI CAYNNNNRTG 3 cut(s) 47, 198, 593
SacI GAGCTC 1 cut(s) 519
SaqAI TTAA 2 cut(s) 17, 296
SatI GCNGC 3 cut(s) 174, 387, 829
Sau3AI GATC 7 cut(s) 30, 312, 316, 484, 667, 811, 951
Sau96I GGNCC 1 cut(s) 872
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 2 cut(s) 165, 252
SduI GDGCHC 1 cut(s) 519
SetI ASST 8 cut(s) 23, 139, 261, 296, 391, 519, 554, 880
SfaNI GCATC 3 cut(s) 214, 236, 905
SfcI CTRYAG 2 cut(s) 94, 114
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 1 cut(s) 872
SmiMI CAYNNNNRTG 3 cut(s) 47, 198, 593
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 123, 889
SsiI CCGC 4 cut(s) 329, 622, 842, 900
SspMI CTAG 3 cut(s) 681, 864, 979
SstI GAGCTC 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 163, 250
StyI CCWWGG 3 cut(s) 402, 510, 663
TaaI ACNGT 2 cut(s) 358, 398
TaqI TCGA 2 cut(s) 315, 503
TasI AATT 2 cut(s) 123, 889
TatI WGTACW 2 cut(s) 139, 768
TfiI GAWTC 3 cut(s) 160, 242, 338
Tru1I TTAA 2 cut(s) 17, 296
Tru9I TTAA 2 cut(s) 17, 296
TseFI GTSAC 2 cut(s) 392, 597
TseI GCWGC 3 cut(s) 173, 386, 828
Tsp45I GTSAC 2 cut(s) 392, 597
TspDTI ATGAA 4 cut(s) 49, 450, 573, 800
Tth111I GACNNNGTC 1 cut(s) 870
Vha464I CTTAAG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 1 cut(s) 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 3 cut(s) 681, 864, 979
ZrmI AGTACT 1 cut(s) 770
Zsp2I ATGCAT 2 cut(s) 195, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.