Prupe.6G306500_v2.0.a1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016872
Physical Location & Seq
Reverse (-)
27643494 .. 27644835
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G306500.1

Sequence Viewer

Length: 984 bp
ATGAGTGCCGCAACGTTAAAAATGAGTTTGATATTCTTTTTGGCCATGTTTATGGTGGTCTTCATGGCATCAGCAGCTCCGAAAGTCGGTTTCTATCAACGGAGTTGTCCTTCTGCAGAGGCAATTGTGAGAAAAGCTGTGAACAAAGCTGTGGCAAAGAATCCAGGCATAGCTGCTGGCCTCATCAGAATGCATTTCCATGATTGCTTTGTTAGGGGTTGTGATGCCTCTATCCTACTTGATTCAACTCCTGGACAACCATCCGAAAAAGAACATCCAGCAAACAATCCGAGCTTGAGAGGCTTTGAAGTGATCGATGAGGCCAAGGCCGAGATTGAAGCTAAATGCCCCAAAACCGTGTCATGTGCTGACATCCTTGCATTTGCTGCTCGTGACAGTGCACTCAAAGTTGGTGGGATAAATTATGACGTGCCTTCGGGGCGGCGAGATGGAAGAGTTTCCCTCCAAGATGAGCCTACGCAGCACCTCCCCCCACCTTCCTTCAACGCCAAGCAACTTGAGGATAGTTTCGCCCGAAAAGGCCTTAGCTTGGATGAAATGGTCACATTATCTGGGGCACATTCTATTGGCGTGTCACATTGTTCTTCCTTCTCTGATCGCTTGTATTTCTTCAATGCTACTCATCCACAAGACCCTTCAATGGATCCCATTTTTGCTCGAAACTTGAAAAAGAAGTGCCCTCGATCATCAAACAATGATCGAGTTACGGTGCCACTTGATGTTCTTACACCAAATAGGCTTGACAACAAGTACTATACTGATTTGAAGAACCATCATGGCCTGCTTACATCAGATCAAACTCTTCTTACCAGCCGTTCGACAGCCGGGATTGTGAGGAACAATGCCAGATTTGGTGCAGCTTGGGCTAATAAGTTTGCAGCAGCCATGGTGAAAATGGGCTCCATTGATGTCCTCACAGGAAGGCAAGGTGAGATCAGGAACAACTGCAAGGTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.63

Weight (kDa)

9.17

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08310
malus_domestica MD12G1201400.v1.1
prunus_persica Prupe.6G306500_v2.0.a1
pyrus_communis pycom12g18750
rosa_chinensis RchiOBHm_Chr3g0458181
rosa_laevigata RLG00000025173
rosa_multiflora Rmu_sc0012767.1_g000002
rosa_roxburghii Rroxscaffold_6G00421230
rosa_rugosa Rorug03G0025400
rosa_samantha Rh3AG086200 Rh3BG088900 Rh3CG089500 Rh3DG089900
rosa_wichuraiana Rw3G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AciI CCGC 2 cut(s) 9, 442
AclI AACGTT 1 cut(s) 14
AclWI GGATC 2 cut(s) 659, 672
AcoI YGGCCR 1 cut(s) 42
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 3 cut(s) 86, 550, 661
AgsI TTSAA 8 cut(s) 246, 308, 338, 505, 634, 660, 688, 787
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 163, 250
AluBI AGCT 8 cut(s) 77, 137, 149, 173, 294, 341, 549, 881
AluI AGCT 8 cut(s) 77, 137, 149, 173, 294, 341, 549, 881
Alw21I GWGCWC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 2 cut(s) 659, 672
AoxI GGCC 6 cut(s) 42, 178, 321, 327, 541, 799
ApaLI GTGCAC 1 cut(s) 399
ApeKI GCWGC 7 cut(s) 74, 173, 386, 481, 878, 899, 902
Asp700I GAANNNNTTC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 847
AsuHPI GGTGA 2 cut(s) 922, 962
BaeGI GKGCMC 3 cut(s) 403, 580, 701
BalI TGGCCA 1 cut(s) 44
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 923
BauI CACGAG 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 7 cut(s) 86, 160, 373, 493, 890, 911, 914
BccI CCATC 3 cut(s) 268, 443, 801
BceAI ACGGC 1 cut(s) 819
BciT130I CCWGG 2 cut(s) 165, 252
BcnI CCSGG 1 cut(s) 847
BfaI CTAG 1 cut(s) 982
BfmI CTRYAG 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 439
BisI GCNGC 9 cut(s) 9, 75, 174, 387, 443, 482, 879, 900, 903
BlsI GCNGC 9 cut(s) 10, 76, 175, 388, 444, 483, 880, 901, 904
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 3 cut(s) 165, 252, 847
BmgBI CACGTC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 666, 732, 922
BmrFI CCNGG 3 cut(s) 165, 252, 847
BmsI GCATC 2 cut(s) 77, 214
BpiI GAAGAC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 2 cut(s) 316, 539
BpuMI CCSGG 1 cut(s) 847
Bsa29I ATCGAT 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 324, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 550, 661
BseBI CCWGG 2 cut(s) 165, 252
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 324, 906
BseGI GGATG 5 cut(s) 260, 274, 372, 559, 643
BseLI CCNNNNNNNGG 3 cut(s) 86, 550, 661
BseSI GKGCMC 3 cut(s) 403, 580, 701
BseXI GCAGC 7 cut(s) 86, 160, 373, 493, 890, 911, 914
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 6 cut(s) 44, 180, 323, 329, 543, 801
BshNI GGYRCC 1 cut(s) 730
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 846
BslI CCNNNNNNNGG 3 cut(s) 86, 550, 661
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 6 cut(s) 44, 180, 323, 329, 543, 801
Bsp1286I GDGCHC 4 cut(s) 403, 580, 701, 923
Bsp143I GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 2 cut(s) 9, 442
BspANI GGCC 6 cut(s) 44, 180, 323, 329, 543, 801
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 666, 732, 922
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 2 cut(s) 659, 672
BspT107I GGYRCC 1 cut(s) 730
BssECI CCNNGG 2 cut(s) 324, 906
BssMI GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 324, 906
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 165, 252
Bst4CI ACNGT 3 cut(s) 358, 398, 730
Bst6I CTCTTC 2 cut(s) 448, 828
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 178, 803
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 5 cut(s) 260, 274, 372, 559, 643
BstKTI GATC 7 cut(s) 315, 619, 667, 707, 721, 817, 957
BstMBI GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
BstMWI GCNNNNNNNGC 6 cut(s) 74, 300, 386, 439, 481, 884
BstNI CCWGG 2 cut(s) 165, 252
BstSCI CCNGG 3 cut(s) 163, 250, 845
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 3 cut(s) 403, 580, 701
BstV1I GCAGC 7 cut(s) 86, 160, 373, 493, 890, 911, 914
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 664
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 6 cut(s) 44, 180, 323, 329, 543, 801
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 5 cut(s) 260, 274, 372, 559, 643
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 178, 803
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 772
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 6 cut(s) 46, 64, 200, 363, 797, 907
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 1 cut(s) 545
DpnI GATC 7 cut(s) 314, 618, 666, 706, 720, 816, 956
DpnII GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 448, 828
EarI CTCTTC 2 cut(s) 448, 828
Eco130I CCWWGG 2 cut(s) 324, 906
Eco147I AGGCCT 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 163, 250
EcoT14I CCWWGG 2 cut(s) 324, 906
EcoT22I ATGCAT 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 923
ErhI CCWWGG 2 cut(s) 324, 906
FaeI CATG 6 cut(s) 49, 67, 203, 366, 800, 910
FatI CATG 6 cut(s) 45, 63, 199, 362, 796, 906
Fnu4HI GCNGC 9 cut(s) 9, 75, 174, 387, 443, 482, 879, 900, 903
FokI GGATG 5 cut(s) 247, 261, 359, 566, 630
FriOI GRGCYC 1 cut(s) 923
Fsp4HI GCNGC 9 cut(s) 9, 75, 174, 387, 443, 482, 879, 900, 903
FspBI CTAG 1 cut(s) 982
GluI GCNGC 9 cut(s) 9, 75, 174, 387, 443, 482, 879, 900, 903
HaeIII GGCC 6 cut(s) 44, 180, 323, 329, 543, 801
HapII CCGG 1 cut(s) 846
Hin1II CATG 6 cut(s) 49, 67, 203, 366, 800, 910
HinfI GANTC 2 cut(s) 160, 242
HpaII CCGG 1 cut(s) 846
HphI GGTGA 2 cut(s) 922, 962
Hpy166II GTNNAC 3 cut(s) 142, 401, 979
Hpy188I TCNGA 6 cut(s) 81, 188, 265, 291, 616, 814
Hpy188III TCNNGA 2 cut(s) 392, 958
Hpy8I GTNNAC 3 cut(s) 142, 401, 979
HpyAV CCTTC 7 cut(s) 120, 444, 507, 511, 619, 666, 936
HpyCH4III ACNGT 3 cut(s) 358, 398, 730
HpyCH4IV ACGT 2 cut(s) 14, 429
HpyCH4V TGCA 7 cut(s) 116, 193, 380, 401, 878, 899, 969
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 300, 386, 439, 481, 884
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 2 cut(s) 14, 429
Hsp92II CATG 6 cut(s) 49, 67, 203, 366, 800, 910
Kzo9I GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
LmnI GCTCC 2 cut(s) 82, 926
Lsp1109I GCAGC 7 cut(s) 86, 160, 373, 493, 890, 911, 914
LweI GCATC 2 cut(s) 77, 214
MaeI CTAG 1 cut(s) 982
MaeII ACGT 2 cut(s) 14, 429
MaeIII GTNAC 4 cut(s) 392, 562, 594, 724
MalI GATC 7 cut(s) 314, 618, 666, 706, 720, 816, 956
MboI GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
MboII GAAGA 6 cut(s) 52, 465, 597, 622, 799, 815
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 4 cut(s) 403, 580, 701, 923
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 2 cut(s) 123, 421
MluNI TGGCCA 1 cut(s) 44
Mox20I TGGCCA 1 cut(s) 44
Mph1103I ATGCAT 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 457
MscI TGGCCA 1 cut(s) 44
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 3 cut(s) 50, 188, 198
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 1 cut(s) 846
MspR9I CCNGG 3 cut(s) 165, 252, 847
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 2 cut(s) 165, 252
MwoI GCNNNNNNNGC 6 cut(s) 74, 300, 386, 439, 481, 884
NciI CCSGG 1 cut(s) 847
NcoI CCATGG 1 cut(s) 906
NdeII GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
NlaIII CATG 6 cut(s) 49, 67, 203, 366, 800, 910
NlaIV GGNNCC 3 cut(s) 666, 732, 922
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 3 cut(s) 392, 562, 594
NsiI ATGCAT 1 cut(s) 195
PceI AGGCCT 1 cut(s) 543
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 160, 242
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 9 cut(s) 10, 76, 175, 388, 444, 483, 880, 901, 904
Psp1406I AACGTT 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 163, 250
PspGI CCWGG 2 cut(s) 163, 250
PspN4I GGNNCC 3 cut(s) 666, 732, 922
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
RseI CAYNNNNRTG 3 cut(s) 50, 188, 198
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 9 cut(s) 9, 75, 174, 387, 443, 482, 879, 900, 903
Sau3AI GATC 7 cut(s) 312, 616, 664, 704, 718, 814, 954
ScaI AGTACT 1 cut(s) 773
ScrFI CCNGG 3 cut(s) 165, 252, 847
SduI GDGCHC 4 cut(s) 403, 580, 701, 923
SfaNI GCATC 2 cut(s) 77, 214
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 3 cut(s) 50, 188, 198
SmlI CTYRAG 2 cut(s) 295, 518
SmoI CTYRAG 2 cut(s) 295, 518
Sse9I AATT 2 cut(s) 123, 421
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 2 cut(s) 9, 442
SspMI CTAG 1 cut(s) 982
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 163, 250, 845
StyI CCWWGG 2 cut(s) 324, 906
TaaI ACNGT 3 cut(s) 358, 398, 730
TaiI ACGT 2 cut(s) 17, 432
TaqI TCGA 5 cut(s) 315, 679, 703, 721, 839
TasI AATT 2 cut(s) 123, 421
TatI WGTACW 1 cut(s) 771
TauI GCSGC 2 cut(s) 11, 445
TfiI GAWTC 2 cut(s) 160, 242
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 3 cut(s) 392, 562, 594
TseI GCWGC 7 cut(s) 74, 173, 386, 481, 878, 899, 902
Tsp45I GTSAC 3 cut(s) 392, 562, 594
TspDTI ATGAA 2 cut(s) 52, 570
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 403
VneI GTGCAC 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 913
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 1 cut(s) 982
ZrmI AGTACT 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.