RLG00000025173

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016872
Physical Location & Seq
Reverse (-)
42729653 .. 42730686
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025173

Sequence Viewer

Length: 936 bp
ATGTCTGTGATGGTCTTCATGTCATCAGCCATAACCCCCAGAGTTGGTTTCTATAGAACAAGTTGTCCTTCTGCAGAAGCAATTGTGAGAAAAGCTGTAAACAAAGCCGTGGCGAAGAATCCTGGCATTGCTGCTGGCCTTATCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGATGCATCTGTCCTACTTGATTCAACTCCTGGAAAGCTATCTGAAAAAGAACATCCGGCAAACAACCCAAGCTTAAGAGGCTTTGAAGTGATCGATGAGGCAAAGGCGGAACTTGAATCTCTATGCCCGAGAACTGTGTCATGTGCTGACATTCTTGCATTCGCAGCTCGTGACGGTGCCTTGGCAGTTGGTGGCATAAACTACCAAGTGCCTTCAGGGAGGCGTGATGGGAGAGTTTCATTATTTGACGACCCTTCCCAAGATCTTCCTTCTCCTTCTTCGAATGCCAAGGAGCTCGGGGATAGTTTTGCACGCAAAGGCTTTATCTTGGATGAAATGGTCACATTATCTGGGGCTCATTCCATTGGTGTGTCACATTGTTCTTCCTTCTCGAACCGCTTGTATTCCTTCAATAAAACTCACCCACAAGACCCTTCCTTGGATCCCAAGTTTGCTAGGGACTTGAAAGCCAAGTGTCCTCCATCCTCATCAAACAATGTAGTCCAACTTGATGGTCTTACACCAAACAGGCTTGACAATAAGTACTACACTAACTTGATGAACCATCGTGGCCTATTTGAGTCGGATCAAACTCTTCTTAGCAGCCATTCAACGGCGGGGATGGTGAGTAATAATGCTAGATTTGTCCCAGCCTGGGCTAAGAATTGTGCATCCGCTATGGTGAAAATGGGTTCCATTGATATCCTCACAGGAAGACAGGGTGAGATCAGAAAAAAGTGCAGGGTTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

312

Amino Acids

33.64

Weight (kDa)

8.95

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 29 - 273 6.7e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08310
malus_domestica MD12G1201400.v1.1
prunus_persica Prupe.6G306500_v2.0.a1
pyrus_communis pycom12g18750
rosa_chinensis RchiOBHm_Chr3g0458181
rosa_laevigata RLG00000025173
rosa_multiflora Rmu_sc0012767.1_g000002
rosa_roxburghii Rroxscaffold_6G00421230
rosa_rugosa Rorug03G0025400
rosa_samantha Rh3AG086200 Rh3BG088900 Rh3CG089500 Rh3DG089900
rosa_wichuraiana Rw3G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 4 cut(s) 287, 577, 797, 855
AclWI GGATC 3 cut(s) 617, 630, 774
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 4 cut(s) 44, 619, 793, 835
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 6 cut(s) 204, 266, 296, 592, 646, 792
AjnI CCWGG 3 cut(s) 121, 208, 833
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 5 cut(s) 95, 217, 252, 347, 475
AluI AGCT 5 cut(s) 95, 217, 252, 347, 475
Alw21I GWGCWC 1 cut(s) 477
AlwI GGATC 3 cut(s) 617, 630, 774
Ama87I CYCGRG 2 cut(s) 307, 476
AoxI GGCC 2 cut(s) 136, 751
ApeKI GCWGC 3 cut(s) 131, 344, 783
AsuHPI GGTGA 4 cut(s) 593, 817, 874, 914
AsuII TTCGAA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 307, 476
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 2 cut(s) 477, 538
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 7, 901
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 3 cut(s) 118, 356, 795
BccI CCATC 6 cut(s) 4, 401, 670, 686, 753, 796
BceAI ACGGC 2 cut(s) 92, 810
BciT130I CCWGG 3 cut(s) 123, 210, 835
BfaI CTAG 2 cut(s) 636, 819
BfmI CTRYAG 2 cut(s) 52, 72
BfrI CTTAAG 1 cut(s) 253
BglII AGATCT 1 cut(s) 442
BisI GCNGC 3 cut(s) 132, 345, 784
BlsI GCNGC 3 cut(s) 133, 346, 785
BmcAI AGTACT 1 cut(s) 725
Bme1390I CCNGG 3 cut(s) 123, 210, 835
BmeT110I CYCGRG 2 cut(s) 307, 476
BmiI GGNNCC 3 cut(s) 358, 624, 874
BmrFI CCNGG 3 cut(s) 123, 210, 835
BmsI GCATC 3 cut(s) 172, 194, 860
BpiI GAAGAC 2 cut(s) 7, 901
Bpu14I TTCGAA 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 5 cut(s) 108, 360, 468, 618, 834
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 619, 793, 835
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 3 cut(s) 123, 210, 835
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 5 cut(s) 108, 360, 468, 618, 834
BseGI GGATG 5 cut(s) 232, 517, 662, 807, 851
BseLI CCNNNNNNNGG 4 cut(s) 44, 619, 793, 835
BseMI GCAATG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 118, 356, 795
BseYI CCCAGC 1 cut(s) 829
BshFI GGCC 2 cut(s) 138, 753
BshNI GGYRCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 307, 476
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 653, 812
BslI CCNNNNNNNGG 4 cut(s) 44, 619, 793, 835
BsmFI GGGAC 2 cut(s) 653, 812
BsmI GAATGC 3 cut(s) 153, 338, 469
BsnI GGCC 2 cut(s) 138, 753
BsoBI CYCGRG 2 cut(s) 307, 476
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 477, 538
Bsp143I GATC 5 cut(s) 270, 442, 622, 766, 906
BspACI CCGC 4 cut(s) 287, 577, 797, 855
BspANI GGCC 2 cut(s) 138, 753
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 358, 624, 874
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 617, 630, 774
BspT104I TTCGAA 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 126
BssECI CCNNGG 5 cut(s) 108, 360, 468, 618, 834
BssMI GATC 5 cut(s) 270, 442, 622, 766, 906
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 3 cut(s) 360, 468, 618
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 123, 210, 835
Bst4CI ACNGT 2 cut(s) 316, 356
Bst6I CTCTTC 1 cut(s) 780
BstAFI CTTAAG 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 136, 493
BstDEI CTNAG 2 cut(s) 779, 840
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 5 cut(s) 232, 517, 662, 807, 851
BstKTI GATC 5 cut(s) 273, 445, 625, 769, 909
BstMBI GATC 5 cut(s) 270, 442, 622, 766, 906
BstMWI GCNNNNNNNGC 2 cut(s) 258, 344
BstNI CCWGG 3 cut(s) 123, 210, 835
BstSCI CCNGG 3 cut(s) 121, 208, 833
BstSFI CTRYAG 2 cut(s) 52, 72
BstV1I GCAGC 3 cut(s) 118, 356, 795
BstV2I GAAGAC 2 cut(s) 7, 901
BstX2I RGATCY 2 cut(s) 442, 622
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 2 cut(s) 442, 622
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 138, 753
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 5 cut(s) 232, 517, 662, 807, 851
Cac8I GCNNGC 2 cut(s) 136, 493
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 724
CviAII CATG 3 cut(s) 19, 158, 321
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 2 cut(s) 779, 840
DpnI GATC 5 cut(s) 272, 444, 624, 768, 908
DpnII GATC 5 cut(s) 270, 442, 622, 766, 906
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 360, 468, 618
Eco24I GRGCYC 2 cut(s) 477, 538
Eco32I GATATC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 307, 476
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 121, 208, 833
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 3 cut(s) 360, 468, 618
EcoT22I ATGCAT 2 cut(s) 153, 187
EcoT38I GRGCYC 2 cut(s) 477, 538
ErhI CCWWGG 3 cut(s) 360, 468, 618
FaeI CATG 3 cut(s) 22, 161, 324
FaiI YATR 8 cut(s) 20, 32, 54, 159, 304, 322, 377, 860
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 2 cut(s) 653, 812
FatI CATG 3 cut(s) 18, 157, 320
FauI CCCGC 1 cut(s) 790
Fnu4HI GCNGC 3 cut(s) 132, 345, 784
FokI GGATG 5 cut(s) 219, 524, 649, 814, 838
FriOI GRGCYC 2 cut(s) 477, 538
Fsp4HI GCNGC 3 cut(s) 132, 345, 784
FspBI CTAG 2 cut(s) 636, 819
GluI GCNGC 3 cut(s) 132, 345, 784
GsaI CCCAGC 1 cut(s) 833
HaeIII GGCC 2 cut(s) 138, 753
HapII CCGG 1 cut(s) 236
Hin1II CATG 3 cut(s) 22, 161, 324
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 4 cut(s) 118, 200, 296, 761
HpaII CCGG 1 cut(s) 236
HphI GGTGA 4 cut(s) 593, 817, 874, 914
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 4 cut(s) 146, 223, 766, 911
Hpy188III TCNNGA 2 cut(s) 350, 571
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 8 cut(s) 78, 402, 444, 459, 465, 577, 598, 624
HpyCH4III ACNGT 2 cut(s) 316, 356
HpyCH4V TGCA 7 cut(s) 74, 151, 185, 338, 491, 851, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 344
HpyF3I CTNAG 2 cut(s) 779, 840
Hsp92II CATG 3 cut(s) 22, 161, 324
Kzo9I GATC 5 cut(s) 270, 442, 622, 766, 906
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 3 cut(s) 118, 356, 795
LweI GCATC 3 cut(s) 172, 194, 860
MaeI CTAG 2 cut(s) 636, 819
MaeIII GTNAC 3 cut(s) 350, 520, 552
MalI GATC 5 cut(s) 272, 444, 624, 768, 908
MboI GATC 5 cut(s) 270, 442, 622, 766, 906
MboII GAAGA 7 cut(s) 7, 127, 437, 450, 555, 767, 906
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 442, 622
MhlI GDGCHC 2 cut(s) 477, 538
MluCI AATT 3 cut(s) 81, 844, 931
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 2 cut(s) 709, 744
MnlI CCTC 6 cut(s) 251, 271, 393, 669, 676, 896
Mph1103I ATGCAT 2 cut(s) 153, 187
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 2 cut(s) 156, 548
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 123, 210, 835
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 3 cut(s) 153, 338, 469
MvaI CCWGG 3 cut(s) 123, 210, 835
MwoI GCNNNNNNNGC 2 cut(s) 258, 344
NdeII GATC 5 cut(s) 270, 442, 622, 766, 906
NlaIII CATG 3 cut(s) 22, 161, 324
NlaIV GGNNCC 3 cut(s) 358, 624, 874
NmuCI GTSAC 3 cut(s) 350, 520, 552
NsiI ATGCAT 2 cut(s) 153, 187
NspV TTCGAA 1 cut(s) 461
PctI GAATGC 3 cut(s) 153, 338, 469
PfeI GAWTC 3 cut(s) 118, 200, 296
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 3 cut(s) 133, 346, 785
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 121, 208, 833
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 3 cut(s) 121, 208, 833
PspN4I GGNNCC 3 cut(s) 358, 624, 874
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 442, 622
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 2 cut(s) 156, 548
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 3 cut(s) 132, 345, 784
Sau3AI GATC 5 cut(s) 270, 442, 622, 766, 906
ScaI AGTACT 1 cut(s) 725
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 123, 210, 835
SduI GDGCHC 2 cut(s) 477, 538
SetI ASST 5 cut(s) 97, 219, 254, 349, 477
SfaNI GCATC 3 cut(s) 172, 194, 860
SfcI CTRYAG 2 cut(s) 52, 72
SfuI TTCGAA 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 156, 548
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 3 cut(s) 81, 844, 931
SsiI CCGC 4 cut(s) 287, 577, 797, 855
SspMI CTAG 2 cut(s) 636, 819
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 3 cut(s) 121, 208, 833
StyI CCWWGG 3 cut(s) 360, 468, 618
TaaI ACNGT 2 cut(s) 316, 356
TaqI TCGA 3 cut(s) 273, 461, 572
TasI AATT 3 cut(s) 81, 844, 931
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 3 cut(s) 118, 200, 296
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 3 cut(s) 350, 520, 552
TseI GCWGC 3 cut(s) 131, 344, 783
Tsp45I GTSAC 3 cut(s) 350, 520, 552
TspDTI ATGAA 4 cut(s) 7, 408, 528, 755
Vha464I CTTAAG 1 cut(s) 253
XspI CTAG 2 cut(s) 636, 819
ZrmI AGTACT 1 cut(s) 725
Zsp2I ATGCAT 2 cut(s) 153, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.