Rmu_sc0012767.1_g000002

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012767.1
OG0016872
Physical Location & Seq
Reverse (-)
11145 .. 12182
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012767.1_g000002.1.cds

Sequence Viewer

Length: 936 bp
atgtctatgatggtcttcatgtcatcagccataacccccagagttggtttctatagaacaagttgtccttctgcagaatcaattgtgagaaaaactgtacaaaaagccgtggcgaagaatcctggcattgctgctggccttatcagaatgcatttccatgattgctttgtcaggggttgtgatgcatctgtcctacttgattcaactcctggaaagctatctgaaaaagaacatccggcaaacaacccaagcttaagaggctttgaagtgatcgatcaggcaaaggcggaacttgaatctctatgcccgagaactgtgtcatgtgctgacattcttgcattcgcagctcgtgacggtgccttggcagttggtggcataaactaccaagtgccttcagggaggcgtgatgggagagtttcattatttgacgacccttcccaagatcttccttctccttcttcgaatgccaaggagctcggggatagttttgcacgcaaaggctttagcttggatgaaatggtcacattatctggggcgcattccattggtgtgtcacattgttcttccttcacgaaccgcttgtattccttcaataaaactcacccacaagacccttccttggatcccaagtttgctagggacttgaaagccaagtgtcctccatcctcatcaaacaatgtagtccaacttgatggtcttacaccaaacaggcttgacaataagtactacactaacttgatgaaccatcgtggcctatttgagtcggatcaaactcttcttagtagccattcaacggcggggatggtgaggaataatgctagacttggtccagcttgggctaagaattttgcatccgctatggtgaaaatgggttccattgatatcctcacaggaaggcagggtgagatcagaaaaaagtgcagggttgtgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

311

Amino Acids

33.76

Weight (kDa)

9.21

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08310
malus_domestica MD12G1201400.v1.1
prunus_persica Prupe.6G306500_v2.0.a1
pyrus_communis pycom12g18750
rosa_chinensis RchiOBHm_Chr3g0458181
rosa_laevigata RLG00000025173
rosa_multiflora Rmu_sc0012767.1_g000002
rosa_roxburghii Rroxscaffold_6G00421230
rosa_rugosa Rorug03G0025400
rosa_samantha Rh3AG086200 Rh3BG088900 Rh3CG089500 Rh3DG089900
rosa_wichuraiana Rw3G007320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 4 cut(s) 287, 577, 797, 855
AclWI GGATC 3 cut(s) 617, 630, 774
AcsI RAATTY 1 cut(s) 844
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 99, 725
AfiI CCNNNNNNNGG 3 cut(s) 44, 619, 793
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 6 cut(s) 204, 266, 296, 592, 646, 792
AjnI CCWGG 2 cut(s) 121, 208
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 6 cut(s) 217, 252, 347, 475, 507, 833
AluI AGCT 6 cut(s) 217, 252, 347, 475, 507, 833
Alw21I GWGCWC 1 cut(s) 477
AlwI GGATC 3 cut(s) 617, 630, 774
Ama87I CYCGRG 2 cut(s) 307, 476
AoxI GGCC 2 cut(s) 136, 751
ApeKI GCWGC 2 cut(s) 131, 344
ApoI RAATTY 1 cut(s) 844
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 827
AsuHPI GGTGA 4 cut(s) 593, 817, 874, 914
AsuII TTCGAA 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 307, 476
AvaII GGWCC 1 cut(s) 827
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 477
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 118, 356
BccI CCATC 6 cut(s) 4, 401, 670, 686, 753, 796
BceAI ACGGC 2 cut(s) 92, 810
BciT130I CCWGG 2 cut(s) 123, 210
BfaI CTAG 3 cut(s) 636, 819, 934
BfmI CTRYAG 2 cut(s) 52, 72
BfrI CTTAAG 1 cut(s) 253
BglII AGATCT 1 cut(s) 442
BisI GCNGC 2 cut(s) 132, 345
BlsI GCNGC 2 cut(s) 133, 346
BmcAI AGTACT 1 cut(s) 725
Bme1390I CCNGG 2 cut(s) 123, 210
Bme18I GGWCC 1 cut(s) 827
BmeT110I CYCGRG 2 cut(s) 307, 476
BmgT120I GGNCC 1 cut(s) 827
BmiI GGNNCC 3 cut(s) 358, 624, 874
BmrFI CCNGG 2 cut(s) 123, 210
BmsI GCATC 3 cut(s) 172, 194, 860
BpiI GAAGAC 1 cut(s) 7
Bpu14I TTCGAA 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 108, 360, 468, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 619, 793
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 2 cut(s) 123, 210
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 4 cut(s) 108, 360, 468, 618
BseGI GGATG 5 cut(s) 232, 517, 662, 807, 851
BseLI CCNNNNNNNGG 3 cut(s) 44, 619, 793
BseMI GCAATG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 118, 356
BshFI GGCC 2 cut(s) 138, 753
BshNI GGYRCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 307, 476
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 3 cut(s) 44, 619, 793
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 4 cut(s) 153, 338, 469, 538
BsnI GGCC 2 cut(s) 138, 753
BsoBI CYCGRG 2 cut(s) 307, 476
Bsp119I TTCGAA 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 477
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 6 cut(s) 270, 274, 442, 622, 766, 906
BspACI CCGC 4 cut(s) 287, 577, 797, 855
BspANI GGCC 2 cut(s) 138, 753
BspDI ATCGAT 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 358, 624, 874
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 617, 630, 774
BspT104I TTCGAA 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 356
BspTI CTTAAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 97
BssECI CCNNGG 4 cut(s) 108, 360, 468, 618
BssMI GATC 6 cut(s) 270, 274, 442, 622, 766, 906
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 3 cut(s) 360, 468, 618
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 123, 210
Bst4CI ACNGT 3 cut(s) 97, 316, 356
Bst6I CTCTTC 1 cut(s) 780
BstAFI CTTAAG 1 cut(s) 253
BstAUI TGTACA 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 136, 493
BstDEI CTNAG 2 cut(s) 779, 840
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 5 cut(s) 232, 517, 662, 807, 851
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 6 cut(s) 273, 277, 445, 625, 769, 909
BstMBI GATC 6 cut(s) 270, 274, 442, 622, 766, 906
BstMWI GCNNNNNNNGC 2 cut(s) 258, 344
BstNI CCWGG 2 cut(s) 123, 210
BstSCI CCNGG 2 cut(s) 121, 208
BstSFI CTRYAG 2 cut(s) 52, 72
BstV1I GCAGC 2 cut(s) 118, 356
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 442, 622
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 2 cut(s) 442, 622
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 138, 753
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 5 cut(s) 232, 517, 662, 807, 851
Cac8I GCNNGC 2 cut(s) 136, 493
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 827
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 98, 724
CviAII CATG 3 cut(s) 19, 158, 321
CviQI GTAC 2 cut(s) 98, 724
DdeI CTNAG 2 cut(s) 779, 840
DpnI GATC 6 cut(s) 272, 276, 444, 624, 768, 908
DpnII GATC 6 cut(s) 270, 274, 442, 622, 766, 906
Eam1104I CTCTTC 1 cut(s) 780
EarI CTCTTC 1 cut(s) 780
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 360, 468, 618
Eco24I GRGCYC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 827
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 307, 476
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 121, 208
EcoRV GATATC 1 cut(s) 883
EcoT14I CCWWGG 3 cut(s) 360, 468, 618
EcoT22I ATGCAT 2 cut(s) 153, 187
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 3 cut(s) 360, 468, 618
FaeI CATG 3 cut(s) 22, 161, 324
FaiI YATR 9 cut(s) 8, 20, 32, 54, 159, 304, 322, 377, 860
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 1 cut(s) 653
FatI CATG 3 cut(s) 18, 157, 320
FauI CCCGC 1 cut(s) 790
Fnu4HI GCNGC 2 cut(s) 132, 345
FokI GGATG 5 cut(s) 219, 524, 649, 814, 838
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 132, 345
FspBI CTAG 3 cut(s) 636, 819, 934
GlaI GCGC 1 cut(s) 537
GluI GCNGC 2 cut(s) 132, 345
HaeIII GGCC 2 cut(s) 138, 753
HapII CCGG 1 cut(s) 236
HhaI GCGC 1 cut(s) 538
Hin1II CATG 3 cut(s) 22, 161, 324
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 77, 118, 200, 296, 761
HpaII CCGG 1 cut(s) 236
HphI GGTGA 4 cut(s) 593, 817, 874, 914
Hpy166II GTNNAC 1 cut(s) 931
Hpy188I TCNGA 4 cut(s) 146, 223, 766, 911
Hpy188III TCNNGA 2 cut(s) 350, 571
Hpy8I GTNNAC 1 cut(s) 931
HpyAV CCTTC 9 cut(s) 78, 402, 444, 459, 465, 577, 598, 624, 888
HpyCH4III ACNGT 3 cut(s) 97, 316, 356
HpyCH4V TGCA 7 cut(s) 74, 151, 185, 338, 491, 851, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 344
HpyF3I CTNAG 2 cut(s) 779, 840
Hsp92II CATG 3 cut(s) 22, 161, 324
HspAI GCGC 1 cut(s) 536
Kzo9I GATC 6 cut(s) 270, 274, 442, 622, 766, 906
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 118, 356
LweI GCATC 3 cut(s) 172, 194, 860
MaeI CTAG 3 cut(s) 636, 819, 934
MaeIII GTNAC 3 cut(s) 350, 520, 552
MalI GATC 6 cut(s) 272, 276, 444, 624, 768, 908
MboI GATC 6 cut(s) 270, 274, 442, 622, 766, 906
MboII GAAGA 6 cut(s) 7, 127, 437, 450, 555, 767
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 442, 622
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 81, 844
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 2 cut(s) 709, 744
MnlI CCTC 6 cut(s) 251, 393, 669, 676, 801, 896
Mph1103I ATGCAT 2 cut(s) 153, 187
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 2 cut(s) 156, 548
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 123, 210
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 4 cut(s) 153, 338, 469, 538
MvaI CCWGG 2 cut(s) 123, 210
MwoI GCNNNNNNNGC 2 cut(s) 258, 344
NdeII GATC 6 cut(s) 270, 274, 442, 622, 766, 906
NlaIII CATG 3 cut(s) 22, 161, 324
NlaIV GGNNCC 3 cut(s) 358, 624, 874
NmuCI GTSAC 3 cut(s) 350, 520, 552
NsiI ATGCAT 2 cut(s) 153, 187
NspV TTCGAA 1 cut(s) 461
PctI GAATGC 4 cut(s) 153, 338, 469, 538
PfeI GAWTC 4 cut(s) 77, 118, 200, 296
PflFI GACNNNGTC 1 cut(s) 825
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 2 cut(s) 133, 346
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 2 cut(s) 121, 208
PspGI CCWGG 2 cut(s) 121, 208
PspN4I GGNNCC 3 cut(s) 358, 624, 874
PspPI GGNCC 1 cut(s) 827
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 442, 622
PsyI GACNNNGTC 1 cut(s) 825
RsaI GTAC 2 cut(s) 99, 725
RsaNI GTAC 2 cut(s) 98, 724
RseI CAYNNNNRTG 2 cut(s) 156, 548
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 132, 345
Sau3AI GATC 6 cut(s) 270, 274, 442, 622, 766, 906
Sau96I GGNCC 1 cut(s) 827
ScaI AGTACT 1 cut(s) 725
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 2 cut(s) 123, 210
SduI GDGCHC 1 cut(s) 477
SetI ASST 6 cut(s) 219, 254, 349, 477, 509, 835
SfaNI GCATC 3 cut(s) 172, 194, 860
SfcI CTRYAG 2 cut(s) 52, 72
SfuI TTCGAA 1 cut(s) 461
SinI GGWCC 1 cut(s) 827
SmiMI CAYNNNNRTG 2 cut(s) 156, 548
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 81, 844
SsiI CCGC 4 cut(s) 287, 577, 797, 855
SspMI CTAG 3 cut(s) 636, 819, 934
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 121, 208
StyI CCWWGG 3 cut(s) 360, 468, 618
TaaI ACNGT 3 cut(s) 97, 316, 356
TaqI TCGA 2 cut(s) 273, 461
TasI AATT 2 cut(s) 81, 844
TatI WGTACW 2 cut(s) 97, 723
TfiI GAWTC 4 cut(s) 77, 118, 200, 296
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 3 cut(s) 350, 520, 552
TseI GCWGC 2 cut(s) 131, 344
Tsp45I GTSAC 3 cut(s) 350, 520, 552
TspDTI ATGAA 4 cut(s) 7, 408, 528, 755
Tth111I GACNNNGTC 1 cut(s) 825
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 827
XapI RAATTY 1 cut(s) 844
XspI CTAG 3 cut(s) 636, 819, 934
ZrmI AGTACT 1 cut(s) 725
Zsp2I ATGCAT 2 cut(s) 153, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.