FvH4_6g08340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018454
Physical Location & Seq
Forward (+)
4935674 .. 4936471
798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08340.t1

Sequence Viewer

Length: 324 bp
ATGAAGAGAGTGAGTAAGGTCCTGCTGATGATCCTGACCATTGTTGCGGTGGCTCTGGCTTTGAGTGTTGAAGCAAGAGTGATGAAGACCAAGGAGCAAGTTGAGCACCCCCAAAACTTCTATGGAGGAGCTGGAGGTGCTTTCTTCCCAGGCTCAGGTCCAGGCATGGTCTCTGGAATTGGGTTCAGCCCATCAGGCGTCTGCACAATCCCTGGTGGATGTATCCCTACTGCCGGTGGTCTTCCCACTATTCCTGGTGGAGGTATTGGTTCTGGTGGCCCTATAATTGGTACTGGTTCAGTTCCAATGATACCACATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

10.53

Weight (kDa)

9.24

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018454)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08340
malus_domestica MD12G1201300.v1.1
prunus_persica Prupe.6G306400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0458221
rosa_roxburghii Rroxscaffold_6G00421210
rosa_rugosa Rorug03G0025500
rosa_samantha Rh3AG086300 Rh3BG089000 Rh3CG089600 Rh3DG090100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 4 cut(s) 155, 233, 260, 287
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 4 cut(s) 148, 160, 211, 253
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 19, 158, 278
AvaII GGWCC 2 cut(s) 19, 158
BbsI GAAGAC 2 cut(s) 92, 233
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 4 cut(s) 150, 162, 213, 255
BciVI GTATCC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 175
BfuI GTATCC 1 cut(s) 233
BglI GCCNNNNNGGC 1 cut(s) 195
Bme1390I CCNGG 4 cut(s) 150, 162, 213, 255
Bme18I GGWCC 2 cut(s) 19, 158
BmgT120I GGNCC 3 cut(s) 19, 158, 278
BmrFI CCNGG 4 cut(s) 150, 162, 213, 255
BpiI GAAGAC 2 cut(s) 92, 233
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 90, 148, 211
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 233, 260, 287
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 4 cut(s) 150, 162, 213, 255
BseDI CCNNGG 3 cut(s) 90, 148, 211
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 4 cut(s) 155, 233, 260, 287
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 4 cut(s) 155, 233, 260, 287
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 90, 148, 211
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 4 cut(s) 150, 162, 213, 255
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 154
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 103, 137, 195
BstNI CCWGG 4 cut(s) 150, 162, 213, 255
BstSCI CCNGG 4 cut(s) 148, 160, 211, 253
BstV2I GAAGAC 2 cut(s) 92, 233
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 19, 158, 278
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 291
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 53, 59, 131, 153, 189, 279
CviKI_1 RGCY 6 cut(s) 53, 59, 131, 153, 189, 279
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 19, 158
EcoNI CCTNNNNNAGG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 4 cut(s) 148, 160, 211, 253
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 169
FaiI YATR 4 cut(s) 123, 167, 284, 318
FatI CATG 1 cut(s) 165
FokI GGATG 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 169
HpaII CCGG 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 34, 174
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 137, 195
HpyF3I CTNAG 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 94, 128
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 16, 97, 136, 233
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 177, 285
MnlI CCTC 3 cut(s) 119, 128, 254
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 4 cut(s) 150, 162, 213, 255
MvaI CCWGG 4 cut(s) 150, 162, 213, 255
MwoI GCNNNNNNNGC 3 cut(s) 103, 137, 195
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 4 cut(s) 148, 160, 211, 253
PspGI CCWGG 4 cut(s) 148, 160, 211, 253
PspPI GGNCC 3 cut(s) 19, 158, 278
PspPPI RGGWCCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 19, 158, 278
ScrFI CCNGG 4 cut(s) 150, 162, 213, 255
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 21, 133, 139, 160, 265
SinI GGWCC 2 cut(s) 19, 158
Sse9I AATT 2 cut(s) 177, 285
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 148, 160, 211, 253
StyI CCWWGG 1 cut(s) 90
TasI AATT 2 cut(s) 177, 285
TspDTI ATGAA 2 cut(s) 17, 98
VpaK11BI GGWCC 2 cut(s) 19, 158
XagI CCTNNNNNAGG 1 cut(s) 258
XcmI CCANNNNNNNNNTGG 2 cut(s) 46, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.