Rh3BG089000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018454
Physical Location & Seq
Forward (+)
6924624 .. 6925298
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG089000.1

Sequence Viewer

Length: 312 bp
ATGGAGAGAGTGAGTAAGGTCCTGCTGATGATCCTGACCGTTGTTGCAATGATTCTGGCTTTGGGTGTTGAAGCAAGAGTGATGAAAACTAAAGAGCAAGTTGAGCACCCCCAAAACTTCTATGGAGGAGCTGGAGGTGCTTTCTTCCCAGGCTCCGGCCCAGGCTTTGCCACTGGAATTGGGTTTAGCCCATCAGGCTTCTGCACACTCCCTGGTGGATGTGTCCCTACTACCGGTGGTTTGCCCACTATTCCTGGTGGCTCTATTGGTACTGGTGGCGGTGGTTCAGTTCCAATGATACCACATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.25

Weight (kDa)

6.7

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018454)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g08340
malus_domestica MD12G1201300.v1.1
prunus_persica Prupe.6G306400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0458221
rosa_roxburghii Rroxscaffold_6G00421210
rosa_rugosa Rorug03G0025500
rosa_samantha Rh3AG086300 Rh3BG089000 Rh3CG089600 Rh3DG090100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 25
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 155, 233
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 4 cut(s) 148, 160, 211, 253
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 19, 158
AvaII GGWCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 4 cut(s) 150, 162, 213, 255
BglI GCCNNNNNGGC 1 cut(s) 195
Bme1390I CCNGG 4 cut(s) 150, 162, 213, 255
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 19, 158
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 4 cut(s) 150, 162, 213, 255
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 148, 160, 211
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 233
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 178, 277
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 4 cut(s) 150, 162, 213, 255
BseDI CCNNGG 3 cut(s) 148, 160, 211
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 155, 233
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 178, 277
BseRI GAGGAG 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 159
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 156, 234
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 155, 233
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 2 cut(s) 178, 277
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 148, 160, 211
BssMI GATC 1 cut(s) 30
Bst2UI CCWGG 4 cut(s) 150, 162, 213, 255
Bst4CI ACNGT 1 cut(s) 40
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 103, 137, 195
BstNI CCWGG 4 cut(s) 150, 162, 213, 255
BstSCI CCNGG 4 cut(s) 148, 160, 211, 253
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 19, 158
Csp6I GTAC 1 cut(s) 270
CspAI ACCGGT 1 cut(s) 233
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 1 cut(s) 305
CviJI RGCY 8 cut(s) 59, 131, 153, 159, 165, 189, 198, 261
CviKI_1 RGCY 8 cut(s) 59, 131, 153, 159, 165, 189, 198, 261
CviQI GTAC 1 cut(s) 270
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 4 cut(s) 148, 160, 211, 253
FaeI CATG 1 cut(s) 308
FaiI YATR 2 cut(s) 123, 306
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 304
FokI GGATG 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 159
HapII CCGG 2 cut(s) 156, 234
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 156, 234
Hpy188III TCNNGA 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 47, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 137, 195
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 128, 158
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 1 cut(s) 177
MnlI CCTC 2 cut(s) 119, 128
MspI CCGG 2 cut(s) 156, 234
MspR9I CCNGG 4 cut(s) 150, 162, 213, 255
MvaI CCWGG 4 cut(s) 150, 162, 213, 255
MwoI GCNNNNNNNGC 3 cut(s) 103, 137, 195
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 4 cut(s) 148, 160, 211, 253
PspGI CCWGG 4 cut(s) 148, 160, 211, 253
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 19, 158
PspPPI RGGWCCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 19, 158
ScrFI CCNGG 4 cut(s) 150, 162, 213, 255
SduI GDGCHC 1 cut(s) 108
SetI ASST 3 cut(s) 21, 133, 139
SinI GGWCC 1 cut(s) 19
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 148, 160, 211, 253
TaaI ACNGT 1 cut(s) 40
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.