FvH4_6g08400

Possibly involved in carbohydrate binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
4982074 .. 4986093
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08400.t2

Sequence Viewer

Length: 1926 bp
ATGGCCAAATCAGCTTCTAAATGCCTCTTCTTATTCTTTTTGTCTTTCCTCTGTAATAGTTCATCAGGAACTCTGGTAGGTTTCTCCTACCATGCTAATGGAAACACTACAACTTCATCACCAAGTAGAACAATATCATTTCTGAAGCGAAACAAGATTGCCCCGTCCCAGATTCGAGTCTTTGTTGAAGATCATAGGATTTTAAGAACTATATCTAACACTGGTGTAGCTATTGATCTCTACTTGAATGAGGGCCATCTTCAAAATATCATAAATTCCAGATCCACTTCAATCTCAGGGCTGAAATCCTATATAATGCCCTTTCTCTCACAAGTAAAGATCAAAAGCATCGTAGCAACTAGTGGTGACTATACAAGAAAGTATGCTCTCTCTATGCTTTTAACCACCCTGAAATCTATACACTCAGTCCTCTCTAGTTTCCCTGCTGACCGTGGAATTAAGGTCTCGGTGGCATTTCCGTTGTCATATTTAGAAAATGTGAGCACCTCACATAGAAGAGACCTGCATAGGATTTGTGACTACATCAAACAAGTGAAATCTGCTGTCATTGTAGAAGCCAAAATTGATGGAGAACTGAGTATGGGTGAAAGGTATGTCCATGCGATGATCAAAAGAGCCAGCCTTGCAAGCTCTCTTTTTCCTTGCAATGATGTCCCCATTGTCTTGACAGTCAAGAGTCCAGCAGTTCCAAGTGCAACTGAAGTAGCTGCATTCGCCGATGAGGTTTCCAAAGCTTTAGAAAATACCACTCACATTTTAAGTAGCATAGTTGGGCTGTATGCACAAGTATCTCCAATGGAAGATTTTGCAGAGAAAGAAATGAAAAGAGCAGAAGAACAGCTCTTTCCTTCTTCTCGCCGAGAACTCTTGAGGAATTTCCACCTCAAAACAACTTTACATGAAGCAGATGACTCACCAACAATCTTCCCTACAACTCCCATTTCCACAACACCACCAGTATCCACCACTCCATACATTCCCACACCAACTATTGTCACTGTCCCCTCTACAAACCCTGTAACAATAGCCCCACTTAATCCTATGCCCTCCACCACACCTATTACAGTGCCCTCCACAAACCCTGTATATTCACCAATACCAGAAGCCAATCCAACCACAGCACCCCCCATCACAGTCCCAGGGACTCCAGTAATAACCAACCCTGTCACAACTTACCCGGCACCAACTGGAGTCGTTCCTGTCACGACACCTGTCACAAATCCAGTGGCACCTCCTGCAACAAGTACTAATGCTCCTGCAGTTCCAGGCCAGAGTTGGTGTGTGGCCAAGACTGGAGCTTCACAAACAGCAGTTCAAGCTGGTTTAGACTATGCTTGTGGAAAGGTAGACTGTTCACAGCTCCAACAAGGTGGGAGTTGTTTCAATCCAAATACTCTCCAAAACCATGCATCTTATGCATTCAACAGCTATTATCAGAAGAATCCGGTTGCAACTAGCTGTGATTTTGGAGGGGTGGCCACAATAGTTGCTACTAATCCAAGCTCTGGTTCATGTACTTACCTATCATCTTCGTCGTCATCAACAACAACCCCAACCCCAACACCAACAACTCCATCTCCTCCAGTATCAACAACTCCATTTCCTCCAGTATCAACAACTCCAACTCCAGAACCAACAACTCCACTACCAGCATCAACAACACCTCCAGCACCAACATTTACATCATTTCCACCACCAGGGGAAGGTGTATCGGGCTCTGCTACTCCACCTTCAGTTTTAAATTCAAGCAACCCAGCATCTTCAGGAACCATGCCACAGTTTGGGATGGACAGCCCTCCTGGTTTTAACAGCTCAACATCCTCTGCAGCTTGCTTGCGGCCCTTTGTTAGTTACATCTTTTTGGTAACAGCCTTGGTTACTAAAAAAATCCTTCTTAACATGTAG

Protein Analysis

642

Amino Acids

67.8

Weight (kDa)

8.73

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 432 - 501 2.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 531
AccB1I GGYRCC 2 cut(s) 1201, 1249
AccB7I CCANNNNNTGG 2 cut(s) 1526, 1802
AccI GTMKAC 1 cut(s) 1368
AciI CCGC 1 cut(s) 1858
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 3 cut(s) 3, 1305, 1497
AcsI RAATTY 3 cut(s) 274, 895, 1762
AcuI CTGAAG 4 cut(s) 164, 741, 1737, 1767
AfaI GTAC 2 cut(s) 1267, 1537
AfiI CCNNNNNNNGG 4 cut(s) 1526, 1718, 1724, 1802
AflIII ACRYGT 1 cut(s) 1920
AgsI TTSAA 8 cut(s) 188, 247, 263, 291, 1337, 1405, 1444, 1767
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 4 cut(s) 1159, 1285, 1717, 1819
AjuI GAANNNNNNNTTGG 2 cut(s) 1513, 1545
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 2 cut(s) 469, 513
AlwI GGATC 1 cut(s) 276
AoxI GGCC 6 cut(s) 3, 253, 1288, 1305, 1497, 1859
ApeKI GCWGC 2 cut(s) 728, 1847
ApoI RAATTY 3 cut(s) 274, 895, 1762
AspS9I GGNCC 2 cut(s) 253, 1860
AsuC2I CCSGG 1 cut(s) 1199
AsuHPI GGTGA 5 cut(s) 111, 377, 617, 927, 1104
BaeGI GKGCMC 1 cut(s) 1092
BalI TGGCCA 3 cut(s) 5, 1307, 1499
BanI GGYRCC 2 cut(s) 1201, 1249
BanII GRGCYC 1 cut(s) 1739
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 715, 1859
BccI CCATC 5 cut(s) 264, 581, 1157, 1603, 1801
BciT130I CCWGG 4 cut(s) 1161, 1287, 1719, 1821
BciVI GTATCC 1 cut(s) 991
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 1 cut(s) 1199
BcoDI GTCTC 2 cut(s) 469, 513
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 3 cut(s) 360, 435, 1476
BfmI CTRYAG 2 cut(s) 1278, 1845
BfuAI ACCTGC 1 cut(s) 531
BfuI GTATCC 1 cut(s) 991
BisI GCNGC 3 cut(s) 729, 1848, 1859
BlsI GCNGC 3 cut(s) 730, 1849, 1860
BmcAI AGTACT 1 cut(s) 1267
Bme1390I CCNGG 5 cut(s) 1161, 1199, 1287, 1719, 1821
BmgT120I GGNCC 2 cut(s) 253, 1860
BmiI GGNNCC 3 cut(s) 1203, 1251, 1789
BmrFI CCNGG 5 cut(s) 1161, 1199, 1287, 1719, 1821
BmsI GCATC 4 cut(s) 357, 1439, 1682, 1787
BoxI GACNNNNGTC 1 cut(s) 1232
BpmI CTGGAG 7 cut(s) 1152, 1230, 1335, 1587, 1611, 1632, 1671
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 1 cut(s) 1199
BsaI GGTCTC 2 cut(s) 469, 513
BsaJI CCNNGG 5 cut(s) 451, 1159, 1160, 1718, 1893
BsaWI WCCGGW 1 cut(s) 1465
BsaXI ACNNNNNCTCC 8 cut(s) 1258, 1288, 1582, 1612, 1630, 1660, 1669, 1699
Bsc4I CCNNNNNNNGG 4 cut(s) 1526, 1718, 1724, 1802
Bse1I ACTGG 8 cut(s) 226, 977, 1169, 1213, 1244, 1318, 1604, 1628
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 4 cut(s) 1161, 1287, 1719, 1821
BseDI CCNNGG 5 cut(s) 451, 1159, 1160, 1718, 1893
BseGI GGATG 2 cut(s) 1812, 1838
BseLI CCNNNNNNNGG 4 cut(s) 1526, 1718, 1724, 1802
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 3 cut(s) 309, 438, 587
BseNI ACTGG 8 cut(s) 226, 977, 1169, 1213, 1244, 1318, 1604, 1628
BseRI GAGGAG 1 cut(s) 1590
BseSI GKGCMC 1 cut(s) 1092
BseXI GCAGC 2 cut(s) 715, 1859
BseYI CCCAGC 1 cut(s) 1774
BshFI GGCC 6 cut(s) 5, 255, 1290, 1307, 1499, 1861
BshNI GGYRCC 2 cut(s) 1201, 1249
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 2 cut(s) 1199, 1466
BslFI GGGAC 5 cut(s) 151, 659, 1007, 1142, 1177
BslI CCNNNNNNNGG 4 cut(s) 1526, 1718, 1724, 1802
BsmAI GTCTC 2 cut(s) 469, 513
BsmFI GGGAC 5 cut(s) 151, 659, 1007, 1142, 1177
BsmI GAATGC 2 cut(s) 731, 1439
BsnI GGCC 6 cut(s) 5, 255, 1290, 1307, 1499, 1861
Bso31I GGTCTC 2 cut(s) 469, 513
Bsp1286I GDGCHC 3 cut(s) 506, 1092, 1739
Bsp143I GATC 5 cut(s) 190, 235, 281, 339, 627
BspACI CCGC 1 cut(s) 1858
BspANI GGCC 6 cut(s) 5, 255, 1290, 1307, 1499, 1861
BspCNI CTCAG 3 cut(s) 308, 437, 588
BspLI GGNNCC 3 cut(s) 1203, 1251, 1789
BspMAI CTGCAG 2 cut(s) 1282, 1849
BspMI ACCTGC 1 cut(s) 531
BspPI GGATC 1 cut(s) 276
BspT107I GGYRCC 2 cut(s) 1201, 1249
BspTNI GGTCTC 2 cut(s) 469, 513
BsrDI GCAATG 1 cut(s) 673
BsrI ACTGG 8 cut(s) 226, 977, 1169, 1213, 1244, 1318, 1604, 1628
BssECI CCNNGG 5 cut(s) 451, 1159, 1160, 1718, 1893
BssMI GATC 5 cut(s) 190, 235, 281, 339, 627
BssT1I CCWWGG 1 cut(s) 1893
Bst2UI CCWGG 4 cut(s) 1161, 1287, 1719, 1821
Bst4CI ACNGT 7 cut(s) 452, 691, 1021, 1087, 1156, 1373, 1800
Bst6I CTCTTC 2 cut(s) 32, 511
BstAPI GCANNNNNTGC 2 cut(s) 1256, 1436
BstC8I GCNNGC 4 cut(s) 640, 649, 1852, 1856
BstDEI CTNAG 3 cut(s) 295, 424, 596
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 2 cut(s) 1812, 1838
BstKTI GATC 5 cut(s) 193, 238, 284, 342, 630
BstMAI GTCTC 2 cut(s) 469, 513
BstMBI GATC 5 cut(s) 190, 235, 281, 339, 627
BstMWI GCNNNNNNNGC 7 cut(s) 11, 644, 648, 734, 1256, 1337, 1436
BstNI CCWGG 4 cut(s) 1161, 1287, 1719, 1821
BstNSI RCATGY 1 cut(s) 1924
BstPAI GACNNNNGTC 1 cut(s) 1232
BstSCI CCNGG 5 cut(s) 1159, 1197, 1285, 1717, 1819
BstSFI CTRYAG 2 cut(s) 1278, 1845
BstSLI GKGCMC 1 cut(s) 1092
BstV1I GCAGC 2 cut(s) 715, 1859
BstX2I RGATCY 1 cut(s) 281
BstXI CCANNNNNNTGG 2 cut(s) 98, 1391
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 6 cut(s) 5, 255, 1290, 1307, 1499, 1861
BtgI CCRYGG 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 2 cut(s) 1812, 1838
BtsIMutI CAGTG 4 cut(s) 219, 1017, 1092, 1251
BveI ACCTGC 1 cut(s) 531
Cac8I GCNNGC 4 cut(s) 640, 649, 1852, 1856
Cfr13I GGNCC 2 cut(s) 253, 1860
Csp6I GTAC 2 cut(s) 1266, 1536
CspCI CAANNNNNGTGG 4 cut(s) 1227, 1262, 1489, 1524
CviAII CATG 7 cut(s) 92, 620, 920, 1427, 1533, 1792, 1921
CviQI GTAC 2 cut(s) 1266, 1536
DdeI CTNAG 3 cut(s) 295, 424, 596
DpnI GATC 5 cut(s) 192, 237, 283, 341, 629
DpnII GATC 5 cut(s) 190, 235, 281, 339, 627
DraI TTTAAA 1 cut(s) 1761
EaeI YGGCCR 3 cut(s) 3, 1305, 1497
Eam1104I CTCTTC 2 cut(s) 32, 511
EarI CTCTTC 2 cut(s) 32, 511
Eco130I CCWWGG 1 cut(s) 1893
Eco24I GRGCYC 1 cut(s) 1739
Eco31I GGTCTC 2 cut(s) 469, 513
Eco57I CTGAAG 4 cut(s) 164, 741, 1737, 1767
EcoRII CCWGG 4 cut(s) 1159, 1285, 1717, 1819
EcoT14I CCWWGG 1 cut(s) 1893
EcoT22I ATGCAT 2 cut(s) 1432, 1441
EcoT38I GRGCYC 1 cut(s) 1739
ErhI CCWWGG 1 cut(s) 1893
FaeI CATG 7 cut(s) 95, 623, 923, 1430, 1536, 1795, 1924
FaqI GGGAC 5 cut(s) 151, 659, 1007, 1142, 1177
FatI CATG 7 cut(s) 91, 619, 919, 1426, 1532, 1791, 1920
FbaI TGATCA 1 cut(s) 627
FblI GTMKAC 1 cut(s) 1368
Fnu4HI GCNGC 3 cut(s) 729, 1848, 1859
FokI GGATG 2 cut(s) 1819, 1825
FriOI GRGCYC 1 cut(s) 1739
Fsp4HI GCNGC 3 cut(s) 729, 1848, 1859
FspBI CTAG 3 cut(s) 360, 435, 1476
GluI GCNGC 3 cut(s) 729, 1848, 1859
GsaI CCCAGC 1 cut(s) 1778
GsuI CTGGAG 7 cut(s) 1152, 1230, 1335, 1587, 1611, 1632, 1671
HaeIII GGCC 6 cut(s) 5, 255, 1290, 1307, 1499, 1861
HapII CCGG 2 cut(s) 1199, 1466
Hin1II CATG 7 cut(s) 95, 623, 923, 1430, 1536, 1795, 1924
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 7 cut(s) 172, 177, 697, 932, 1165, 1212, 1462
HpaII CCGG 2 cut(s) 1199, 1466
HphI GGTGA 5 cut(s) 111, 377, 617, 927, 1104
Hpy166II GTNNAC 2 cut(s) 1369, 1376
Hpy188I TCNGA 2 cut(s) 144, 1458
Hpy188III TCNNGA 8 cut(s) 66, 279, 685, 694, 889, 1225, 1649, 1785
Hpy8I GTNNAC 2 cut(s) 1369, 1376
Hpy99I CGWCG 1 cut(s) 1558
HpyAV CCTTC 4 cut(s) 879, 1718, 1761, 1922
HpyCH4III ACNGT 7 cut(s) 452, 691, 1021, 1087, 1156, 1373, 1800
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 644, 648, 734, 1256, 1337, 1436
HpyF3I CTNAG 3 cut(s) 295, 424, 596
Hsp92II CATG 7 cut(s) 95, 623, 923, 1430, 1536, 1795, 1924
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 5 cut(s) 190, 235, 281, 339, 627
LmnI GCTCC 3 cut(s) 1279, 1316, 1386
Lsp1109I GCAGC 2 cut(s) 715, 1859
LweI GCATC 4 cut(s) 357, 1439, 1682, 1787
MaeI CTAG 3 cut(s) 360, 435, 1476
MalI GATC 5 cut(s) 192, 237, 283, 341, 629
MboI GATC 5 cut(s) 190, 235, 281, 339, 627
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 3 cut(s) 506, 1092, 1739
MlsI TGGCCA 3 cut(s) 5, 1307, 1499
MluCI AATT 5 cut(s) 274, 456, 582, 895, 1762
MluNI TGGCCA 3 cut(s) 5, 1307, 1499
MlyI GAGTC 5 cut(s) 186, 706, 926, 1159, 1221
MmeI TCCRAC 3 cut(s) 1157, 1408, 1667
Mox20I TGGCCA 3 cut(s) 5, 1307, 1499
Mph1103I ATGCAT 2 cut(s) 1432, 1441
MscI TGGCCA 3 cut(s) 5, 1307, 1499
MseI TTAA 8 cut(s) 203, 401, 459, 779, 1056, 1760, 1827, 1917
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 3 cut(s) 5, 1307, 1499
MspI CCGG 2 cut(s) 1199, 1466
MspR9I CCNGG 5 cut(s) 1161, 1199, 1287, 1719, 1821
Mva1269I GAATGC 2 cut(s) 731, 1439
MvaI CCWGG 4 cut(s) 1161, 1287, 1719, 1821
MwoI GCNNNNNNNGC 7 cut(s) 11, 644, 648, 734, 1256, 1337, 1436
NciI CCSGG 1 cut(s) 1199
NdeII GATC 5 cut(s) 190, 235, 281, 339, 627
NlaIII CATG 7 cut(s) 95, 623, 923, 1430, 1536, 1795, 1924
NlaIV GGNNCC 3 cut(s) 1203, 1251, 1789
NmeAIII GCCGAG 1 cut(s) 905
NmuCI GTSAC 6 cut(s) 365, 536, 1015, 1186, 1222, 1234
NsiI ATGCAT 2 cut(s) 1432, 1441
NspI RCATGY 1 cut(s) 1924
PasI CCCWGGG 1 cut(s) 1160
PciI ACATGT 1 cut(s) 1920
PctI GAATGC 2 cut(s) 731, 1439
PfeI GAWTC 2 cut(s) 172, 1462
PflMI CCANNNNNTGG 2 cut(s) 1526, 1802
PkrI GCNGC 3 cut(s) 730, 1849, 1860
PleI GAGTC 5 cut(s) 185, 705, 926, 1159, 1220
PpsI GAGTC 5 cut(s) 185, 705, 926, 1159, 1220
PscI ACATGT 1 cut(s) 1920
PshAI GACNNNNGTC 1 cut(s) 1232
Psp6I CCWGG 4 cut(s) 1159, 1285, 1717, 1819
PspFI CCCAGC 1 cut(s) 1774
PspGI CCWGG 4 cut(s) 1159, 1285, 1717, 1819
PspN4I GGNNCC 3 cut(s) 1203, 1251, 1789
PspPI GGNCC 2 cut(s) 253, 1860
PstI CTGCAG 2 cut(s) 1282, 1849
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 2 cut(s) 1267, 1537
RsaNI GTAC 2 cut(s) 1266, 1536
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 8 cut(s) 203, 401, 459, 779, 1056, 1760, 1827, 1917
SatI GCNGC 3 cut(s) 729, 1848, 1859
Sau3AI GATC 5 cut(s) 190, 235, 281, 339, 627
Sau96I GGNCC 2 cut(s) 253, 1860
ScaI AGTACT 1 cut(s) 1267
SchI GAGTC 5 cut(s) 186, 706, 926, 1159, 1221
ScrFI CCNGG 5 cut(s) 1161, 1199, 1287, 1719, 1821
SduI GDGCHC 3 cut(s) 506, 1092, 1739
SfaNI GCATC 4 cut(s) 357, 1439, 1682, 1787
SfcI CTRYAG 2 cut(s) 1278, 1845
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 5 cut(s) 274, 456, 582, 895, 1762
SsiI CCGC 1 cut(s) 1858
SspMI CTAG 3 cut(s) 360, 435, 1476
StyD4I CCNGG 5 cut(s) 1159, 1197, 1285, 1717, 1819
StyI CCWWGG 1 cut(s) 1893
TaaI ACNGT 7 cut(s) 452, 691, 1021, 1087, 1156, 1373, 1800
TaqI TCGA 1 cut(s) 175
TasI AATT 5 cut(s) 274, 456, 582, 895, 1762
TatI WGTACW 2 cut(s) 1265, 1535
TauI GCSGC 1 cut(s) 1861
TfiI GAWTC 2 cut(s) 172, 1462
Tru1I TTAA 8 cut(s) 203, 401, 459, 779, 1056, 1760, 1827, 1917
Tru9I TTAA 8 cut(s) 203, 401, 459, 779, 1056, 1760, 1827, 1917
TscAI CASTG 4 cut(s) 226, 1024, 1092, 1251
TseFI GTSAC 6 cut(s) 365, 536, 1015, 1186, 1222, 1234
TseI GCWGC 2 cut(s) 728, 1847
Tsp45I GTSAC 6 cut(s) 365, 536, 1015, 1186, 1222, 1234
TspDTI ATGAA 5 cut(s) 51, 105, 857, 936, 1521
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 4 cut(s) 226, 1024, 1092, 1251
Van91I CCANNNNNTGG 2 cut(s) 1526, 1802
XapI RAATTY 3 cut(s) 274, 895, 1762
XceI RCATGY 1 cut(s) 1924
XcmI CCANNNNNNNNNTGG 1 cut(s) 1293
XmiI GTMKAC 1 cut(s) 1368
XspI CTAG 3 cut(s) 360, 435, 1476
ZrmI AGTACT 1 cut(s) 1267
Zsp2I ATGCAT 2 cut(s) 1432, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.