Rh3DG090800

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011574
Physical Location & Seq
Forward (+)
7009690 .. 7013164
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG090800.1

Sequence Viewer

Length: 1716 bp
ATGAATAAAAATCCAACTTGGTTTCTTCATAGACTCCCAGAAGCCCCTCACACAACAATGGCCAAATCAGCTTCTAAATGCCTCTTCTTATTCTTTCTGTCTTTCCTCTTTAGCTGTTCATCAGGAACTCTGGTAGGTTTCTCCTACCATGTTAGCGGAAACACTACAACTTCATCACCAAGTAGAACAATATCATTTCTGAAGCGAAACAAGATTGCCCCATCTCAGATTCGCGTCTTTGTTGAAGATCATAGAATTTTAAGAACTCTGTCCAACACTGGTGTAGCTGTTGATCTCTACTTGAATGAGGCCCTTGTTCAAAATATCATAAATTCCAAATCTTCTTCAATCTCAGGGCTGAAATCCTATATAATGCCCTTTCTCTCACAAGTAAAGATCAAAAGCATCGTAGCAACTAGTGGTGACTATACAAGAAAATATGCTCTCTCCATGCTTTTATCGACCCTGAAATCTATACACTCAGTCCTCTCTAGTTTACCTGCTGACCGCAGAGTTAAGGTCTCGGTGGCATTTCCTTTGTCATTTTTAGAGAATATGAGCACCTCACATGGAAGAGACCTGCATAGGATCTGTGACTACATCAAACAAGTGAAATCTGCTGTCATTGTAGAAGCCAATATTGATGGAGAATTGAGTATGGGTGAAAGGTTTGTCCATTCGATGATCGAAAGAGCCAGCCTTGCAAATTCTCTTCTTCCTTGCACTGATGTCCCCATGGTTTTGACAGTCAAGAGTCCAGCAGTTCCCAGTGCAACTGAAGTAGCTGCATTCGCCGATAAGGTGTCCAAAGCTTTAGAAACCAACACTCACATTATAAGTAGCATAGTTGGTCTATATGCACAAGTATCTTCAATGGAAGATTTTGCACAGAAAGAGATGAAAAGAGCAGAAGAACAGATCTTTCCTTCTTTTCGCCGAGTACTCTCAAGAATCTTCCACCTCAAGACAACTTTACATGAAGCAGATGACTCACCAACAATCTTCCCTACAACTCCCATATCCACAACACCACCAATATCCACCACTCCATATATTCCTACCCCAACTATTGTCACTGTCCCCTCTACAAACACAGTACCAATAGCTCCATTGAATCCTATACCCTCCACCACACCTATTACTGTGCCCTCCACAAACCCTGCGGATTCACCAGTACCAGAAGCCAATCCTACCACAGCACCCCCCATCACAGTCCCAGGGAATCCAGTAATAACCAACCCTGTCACAACTTACCCGGCACCAGCTGGAGTCGTTCCTGTCACGACACCTGTCACGAATCCTGTGGCACCTCCTGCAACAAGTACTAATGCACCTGCAGTTCCAGGACAGAGTTGGTGTGTGGCCAAGAGTGGAGCATCGGAAACAGCAGTTCAGGCTGCTTTGGACTATGCTTGTGGAAAGGTAGACTGTTCACAGCTCCAGCAAGGTGGGAGTTGTTACAATCCAAATACTCTCCAAAACCATGCCTCATATGCATTCAACAGCTATTATCAGAAGAATCCAGTTGCAACTAGCTGTGACTTTGGAGGAGTTGCCACAATAGTTACTACTAATCCAAGTATGACACTTATTTTGTTAATCAGTTTTTGTTCTTATAATTTCATATATGCTGGTGTTGTAACAATAGGGAAACGTTCTCTTGCTATACAACCAAGCAGAAAATTTGCAAAAATAGCCCAAATTTGGACACTTTGA

Protein Analysis

571

Amino Acids

61.49

Weight (kDa)

9.15

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 451 - 520 2.9e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 836, 1617
AarI CACCTGC 1 cut(s) 1342
Acc36I ACCTGC 3 cut(s) 508, 588, 1342
AccB1I GGYRCC 2 cut(s) 1258, 1306
AccI GTMKAC 1 cut(s) 1425
AccII CGCG 1 cut(s) 234
AciI CCGC 3 cut(s) 156, 508, 1163
AclI AACGTT 1 cut(s) 1654
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 2 cut(s) 60, 1362
AcsI RAATTY 5 cut(s) 255, 331, 706, 1682, 1701
AcuI CTGAAG 2 cut(s) 221, 798
AfaI GTAC 4 cut(s) 942, 1098, 1176, 1324
AfiI CCNNNNNNNGG 1 cut(s) 1704
AgsI TTSAA 7 cut(s) 245, 304, 320, 348, 873, 1114, 1501
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 2 cut(s) 1216, 1342
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 2 cut(s) 526, 570
AlwI GGATC 1 cut(s) 596
AoxI GGCC 3 cut(s) 60, 309, 1362
ApeKI GCWGC 2 cut(s) 785, 1397
ApoI RAATTY 5 cut(s) 255, 331, 706, 1682, 1701
ArsI GACNNNNNNTTYG 2 cut(s) 1576, 1608
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 1256
AsuHPI GGTGA 5 cut(s) 168, 434, 674, 984, 1161
BaeGI GKGCMC 1 cut(s) 1149
BalI TGGCCA 2 cut(s) 62, 1364
BanI GGYRCC 2 cut(s) 1258, 1306
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 772, 1384
BccI CCATC 3 cut(s) 229, 638, 1214
BciT130I CCWGG 2 cut(s) 1218, 1344
BcnI CCSGG 1 cut(s) 1256
BcoDI GTCTC 2 cut(s) 526, 570
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 3 cut(s) 417, 492, 1533
BfmI CTRYAG 1 cut(s) 1335
BfuAI ACCTGC 3 cut(s) 508, 588, 1342
BglII AGATCT 1 cut(s) 918
BisI GCNGC 2 cut(s) 786, 1398
BlsI GCNGC 2 cut(s) 787, 1399
BmcAI AGTACT 2 cut(s) 942, 1324
Bme1390I CCNGG 3 cut(s) 1218, 1256, 1344
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 1260, 1308
BmrFI CCNGG 3 cut(s) 1218, 1256, 1344
BmrI ACTGGG 1 cut(s) 762
BmsI GCATC 2 cut(s) 414, 1385
BmuI ACTGGG 1 cut(s) 762
BoxI GACNNNNGTC 1 cut(s) 1289
BpmI CTGGAG 2 cut(s) 1287, 1424
BpuEI CTTGAG 2 cut(s) 931, 947
BpuMI CCSGG 1 cut(s) 1256
BsaI GGTCTC 2 cut(s) 526, 570
BsaJI CCNNGG 3 cut(s) 735, 1216, 1217
Bsc4I CCNNNNNNNGG 1 cut(s) 1704
Bse1I ACTGG 5 cut(s) 283, 768, 1172, 1226, 1523
BseBI CCWGG 2 cut(s) 1218, 1344
BseDI CCNNGG 3 cut(s) 735, 1216, 1217
BseLI CCNNNNNNNGG 1 cut(s) 1704
BseMII CTCAG 3 cut(s) 239, 366, 495
BseNI ACTGG 5 cut(s) 283, 768, 1172, 1226, 1523
BseRI GAGGAG 1 cut(s) 1563
BseSI GKGCMC 1 cut(s) 1149
BseXI GCAGC 2 cut(s) 772, 1384
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 62, 311, 1364
BshNI GGYRCC 2 cut(s) 1258, 1306
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 1 cut(s) 1256
BslFI GGGAC 3 cut(s) 716, 1064, 1199
BslI CCNNNNNNNGG 1 cut(s) 1704
BsmAI GTCTC 2 cut(s) 526, 570
BsmFI GGGAC 3 cut(s) 716, 1064, 1199
BsmI GAATGC 2 cut(s) 788, 1496
BsnI GGCC 3 cut(s) 62, 311, 1364
Bso31I GGTCTC 2 cut(s) 526, 570
Bsp1286I GDGCHC 2 cut(s) 563, 1149
Bsp143I GATC 6 cut(s) 247, 292, 396, 588, 684, 918
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 3 cut(s) 156, 508, 1163
BspANI GGCC 3 cut(s) 62, 311, 1364
BspCNI CTCAG 3 cut(s) 238, 365, 494
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 1260, 1308
BspMAI CTGCAG 1 cut(s) 1339
BspMI ACCTGC 3 cut(s) 508, 588, 1342
BspPI GGATC 1 cut(s) 596
BspT107I GGYRCC 2 cut(s) 1258, 1306
BspTNI GGTCTC 2 cut(s) 526, 570
BsrI ACTGG 5 cut(s) 283, 768, 1172, 1226, 1523
BssECI CCNNGG 3 cut(s) 735, 1216, 1217
BssMI GATC 6 cut(s) 247, 292, 396, 588, 684, 918
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 1218, 1344
Bst4CI ACNGT 6 cut(s) 748, 1078, 1096, 1144, 1213, 1430
Bst6I CTCTTC 3 cut(s) 89, 568, 717
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 3 cut(s) 225, 352, 481
BstDSI CCRYGG 1 cut(s) 735
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 6 cut(s) 250, 295, 399, 591, 687, 921
BstMAI GTCTC 2 cut(s) 526, 570
BstMBI GATC 6 cut(s) 247, 292, 396, 588, 684, 918
BstMWI GCNNNNNNNGC 7 cut(s) 68, 701, 791, 1313, 1394, 1493, 1694
BstNI CCWGG 2 cut(s) 1218, 1344
BstPAI GACNNNNGTC 1 cut(s) 1289
BstSCI CCNGG 3 cut(s) 1216, 1254, 1342
BstSFI CTRYAG 1 cut(s) 1335
BstSLI GKGCMC 1 cut(s) 1149
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 772, 1384
BstX2I RGATCY 2 cut(s) 588, 918
BstXI CCANNNNNNTGG 1 cut(s) 1448
BstYI RGATCY 2 cut(s) 588, 918
BsuRI GGCC 3 cut(s) 62, 311, 1364
BtgI CCRYGG 1 cut(s) 735
BtsIMutI CAGTG 4 cut(s) 276, 723, 775, 1074
BveI ACCTGC 3 cut(s) 508, 588, 1342
Cac8I GCNNGC 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 223
Csp6I GTAC 4 cut(s) 941, 1097, 1175, 1323
CviAII CATG 6 cut(s) 149, 451, 569, 736, 977, 1484
CviQI GTAC 4 cut(s) 941, 1097, 1175, 1323
DdeI CTNAG 3 cut(s) 225, 352, 481
DpnI GATC 6 cut(s) 249, 294, 398, 590, 686, 920
DpnII GATC 6 cut(s) 247, 292, 396, 588, 684, 918
EaeI YGGCCR 2 cut(s) 60, 1362
Eam1104I CTCTTC 3 cut(s) 89, 568, 717
EarI CTCTTC 3 cut(s) 89, 568, 717
Eco130I CCWWGG 1 cut(s) 735
Eco31I GGTCTC 2 cut(s) 526, 570
Eco57I CTGAAG 2 cut(s) 221, 798
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 1216, 1342
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 1498
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 6 cut(s) 152, 454, 572, 739, 980, 1487
FaqI GGGAC 3 cut(s) 716, 1064, 1199
FatI CATG 6 cut(s) 148, 450, 568, 735, 976, 1483
FauNDI CATATG 1 cut(s) 1492
FblI GTMKAC 1 cut(s) 1425
Fnu4HI GCNGC 2 cut(s) 786, 1398
Fsp4HI GCNGC 2 cut(s) 786, 1398
FspBI CTAG 3 cut(s) 417, 492, 1533
GluI GCNGC 2 cut(s) 786, 1398
GsuI CTGGAG 2 cut(s) 1287, 1424
HaeIII GGCC 3 cut(s) 62, 311, 1364
HapII CCGG 1 cut(s) 1256
HgaI GACGC 1 cut(s) 223
Hin1II CATG 6 cut(s) 152, 454, 572, 739, 980, 1487
HindIII AAGCTT 1 cut(s) 810
HpaII CCGG 1 cut(s) 1256
HphI GGTGA 5 cut(s) 168, 434, 674, 984, 1161
Hpy166II GTNNAC 3 cut(s) 497, 1426, 1433
Hpy188I TCNGA 4 cut(s) 201, 228, 1381, 1515
Hpy188III TCNNGA 6 cut(s) 123, 751, 948, 964, 1282, 1294
Hpy8I GTNNAC 3 cut(s) 497, 1426, 1433
HpyAV CCTTC 1 cut(s) 936
HpyCH4III ACNGT 6 cut(s) 748, 1078, 1096, 1144, 1213, 1430
HpyCH4IV ACGT 1 cut(s) 1654
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 701, 791, 1313, 1394, 1493, 1694
HpyF3I CTNAG 3 cut(s) 225, 352, 481
HpySE526I ACGT 1 cut(s) 1654
Hsp92II CATG 6 cut(s) 152, 454, 572, 739, 980, 1487
Kzo9I GATC 6 cut(s) 247, 292, 396, 588, 684, 918
LmnI GCTCC 3 cut(s) 1111, 1373, 1443
Lsp1109I GCAGC 2 cut(s) 772, 1384
LweI GCATC 2 cut(s) 414, 1385
MaeI CTAG 3 cut(s) 417, 492, 1533
MaeII ACGT 1 cut(s) 1654
MalI GATC 6 cut(s) 249, 294, 398, 590, 686, 920
MboI GATC 6 cut(s) 247, 292, 396, 588, 684, 918
MflI RGATCY 2 cut(s) 588, 918
MhlI GDGCHC 2 cut(s) 563, 1149
MlsI TGGCCA 2 cut(s) 62, 1364
MluCI AATT 7 cut(s) 255, 331, 650, 706, 1618, 1682, 1701
MluNI TGGCCA 2 cut(s) 62, 1364
MlyI GAGTC 4 cut(s) 27, 763, 983, 1278
MmeI TCCRAC 2 cut(s) 38, 297
Mox20I TGGCCA 2 cut(s) 62, 1364
Mph1103I ATGCAT 1 cut(s) 1498
MscI TGGCCA 2 cut(s) 62, 1364
MseI TTAA 3 cut(s) 260, 516, 1598
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 2 cut(s) 62, 1364
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 1 cut(s) 1256
MspR9I CCNGG 3 cut(s) 1218, 1256, 1344
Mva1269I GAATGC 2 cut(s) 788, 1496
MvaI CCWGG 2 cut(s) 1218, 1344
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 7 cut(s) 68, 701, 791, 1313, 1394, 1493, 1694
NciI CCSGG 1 cut(s) 1256
NcoI CCATGG 1 cut(s) 735
NdeI CATATG 1 cut(s) 1492
NdeII GATC 6 cut(s) 247, 292, 396, 588, 684, 918
NlaIII CATG 6 cut(s) 152, 454, 572, 739, 980, 1487
NlaIV GGNNCC 2 cut(s) 1260, 1308
NmeAIII GCCGAG 1 cut(s) 962
NmuCI GTSAC 7 cut(s) 422, 593, 1072, 1243, 1279, 1291, 1538
NsiI ATGCAT 1 cut(s) 1498
PaqCI CACCTGC 1 cut(s) 1342
PasI CCCWGGG 1 cut(s) 1217
PctI GAATGC 2 cut(s) 788, 1496
PfeI GAWTC 7 cut(s) 229, 951, 1114, 1166, 1222, 1297, 1519
PfoI TCCNGGA 1 cut(s) 1342
PkrI GCNGC 2 cut(s) 787, 1399
PleI GAGTC 4 cut(s) 27, 762, 983, 1277
PpsI GAGTC 4 cut(s) 27, 762, 983, 1277
PshAI GACNNNNGTC 1 cut(s) 1289
PsiI TTATAA 2 cut(s) 836, 1617
Psp1406I AACGTT 1 cut(s) 1654
Psp6I CCWGG 2 cut(s) 1216, 1342
PspGI CCWGG 2 cut(s) 1216, 1342
PspN4I GGNNCC 2 cut(s) 1260, 1308
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 1339
PsuI RGATCY 2 cut(s) 588, 918
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 4 cut(s) 942, 1098, 1176, 1324
RsaNI GTAC 4 cut(s) 941, 1097, 1175, 1323
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 260, 516, 1598
SatI GCNGC 2 cut(s) 786, 1398
Sau3AI GATC 6 cut(s) 247, 292, 396, 588, 684, 918
Sau96I GGNCC 1 cut(s) 310
ScaI AGTACT 2 cut(s) 942, 1324
SchI GAGTC 4 cut(s) 27, 763, 983, 1278
ScrFI CCNGG 3 cut(s) 1218, 1256, 1344
SduI GDGCHC 2 cut(s) 563, 1149
SfaNI GCATC 2 cut(s) 414, 1385
SfcI CTRYAG 1 cut(s) 1335
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 946, 962
SmoI CTYRAG 2 cut(s) 946, 962
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 7 cut(s) 255, 331, 650, 706, 1618, 1682, 1701
SsiI CCGC 3 cut(s) 156, 508, 1163
SspI AATATT 1 cut(s) 640
SspMI CTAG 3 cut(s) 417, 492, 1533
StyD4I CCNGG 3 cut(s) 1216, 1254, 1342
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 6 cut(s) 748, 1078, 1096, 1144, 1213, 1430
TaiI ACGT 1 cut(s) 1657
TaqI TCGA 3 cut(s) 461, 680, 687
TasI AATT 7 cut(s) 255, 331, 650, 706, 1618, 1682, 1701
TatI WGTACW 2 cut(s) 940, 1322
TfiI GAWTC 7 cut(s) 229, 951, 1114, 1166, 1222, 1297, 1519
Tru1I TTAA 3 cut(s) 260, 516, 1598
Tru9I TTAA 3 cut(s) 260, 516, 1598
TscAI CASTG 4 cut(s) 283, 730, 775, 1081
TseFI GTSAC 7 cut(s) 422, 593, 1072, 1243, 1279, 1291, 1538
TseI GCWGC 2 cut(s) 785, 1397
Tsp45I GTSAC 7 cut(s) 422, 593, 1072, 1243, 1279, 1291, 1538
TspDTI ATGAA 7 cut(s) 17, 17, 108, 162, 914, 993, 1612
TspRI CASTG 4 cut(s) 283, 730, 775, 1081
XapI RAATTY 5 cut(s) 255, 331, 706, 1682, 1701
XcmI CCANNNNNNNNNTGG 1 cut(s) 1350
XmiI GTMKAC 1 cut(s) 1425
XspI CTAG 3 cut(s) 417, 492, 1533
ZrmI AGTACT 2 cut(s) 942, 1324
Zsp2I ATGCAT 1 cut(s) 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.