RLG00000025165

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011574
Physical Location & Seq
Reverse (-)
42645456 .. 42648067
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025165

Sequence Viewer

Length: 1914 bp
ATGGCCAAATCAGCTTCTAAATGCCTCTTCTTATTCTTTCTGTCTTTCCTCTTTAGCTGTTCATCAGGAACTCTGGTAGGTTTCTCCTACCATGTTAGCGGAAACACTACAACTTCATCACCAAGTAGAACAATATCATTTCTGAAGCGAAACAAGATTGCCCCATCTCAGATTCGAGTCTTTGTTGAAGATCATAGGATTTTAAGAACTCTGTCCAACACTGGTGTAGCTGTTGATATCTACTTGAATGAGGGCCATGTTCAAAATATCATAAATTCCAAATCTTCTTCAATATCAGGTCTGAAATCCTATATAATGCCCTTTCTCTCACAAGTAAAGATCAAAAGCATCGTAGCAACTAGTGGTGACTATACAAGAAAATATGCCCTCTCCATGCTTTTATCCACCCTGAAATCTATACACTCAGTCCTCTCTAGTTTACCTGCTGACCGCAGAATTAAGGTTTTGGTGGCATTTCCTTTGTCATTTTTAGAGAATATGAGCACCTCACATGGAAGAGACCTGCATAGGATTTGTGACTACATCAAACAAGTGAAATCTGCTGTCATTGTAGAAGCCAATATTGATGGAGAATTGAGTATGGGTGAAAGGTTTATCCATTCGATGATTGAAAGAGCCAGCCTTGCAAATTCTCTTCTTCCTTGCACTGATGTGCCCATGGTTTTGACAGTCAAGAGTCCAGCAGTTCCCAGTGCAACTGAAGTAGCTGCGTTCGCCGATAACATGTCCAAAGCTTTAGAAACCAACACTCACATTATAAGTAGCCTAGTGGGTCTATATGCACAAGTATCTTCAATGGAAGATTTTGCACAGAAAGAGATGGAAAGAGCAGAAGAACAGATCTTTCCTTCTTTTCGCCGAGTACTCTCAAGAATCTTCCACCTCAAGACAACTTTACATGAAGCAGATGACTCACCAACAATCTTCCCTACAACTCCCATATCCACCACTCCATATATTCCTACCCCAACTATTGTCACTGTCCCCTCTACAAACACAGTACCAATAGCTCCATTGAATCCTATACCCTCCACCACACCTATTACTGTGCCCTCCACAAACCCTGTGGATTCACCGGTACCAGAAGCCAATCCTACCACAGCACCCCCCATCACAGTCCCAGGGAATCCAGTAATAACCAACCCTGTCACTACTTACCCGGCACCAGCTGGAGTCGTTCCTGTCACGACACCTGTCACGAATCCTGTGGCACCTCCTGCAACAAGTACTAATGCTCCTGCGGTTCCAGGACAGAGTTGGTGTGTGGCCAAGAGCGGAGCATCGGAAACAGCAGTTCAGGCTGGTTTGGACTATGCTTGTGGAAAGGTAGACTGTTCACAGCTCCAGCAAGGTGGGAGTTGTTACAATCCAAATACTCTCCAAAACCATGCCTCATATGCATTCAACAGCTATTATCAGAAGAATCCAGTTGCAACTAGCTGTGACTTTGGAGGGGTTGCCACAATAGTTACTACTAATCCAAGCACTGGTTCATGTACTTACCTATCATCATCGTCATCATCATCAACAACCCCAACACCAACAACTCCATCTCCTCCGGCATCAACAACTCCATCACCTCCAGCATCAACAACTCCATCTCCTCCGGTATCAACAACTCCAACTCCATTACCAGCAACAACAACTCCTCCAGCACCAACATTTACATCATTTCCACCACCAGGGGAAGGTGTATCAGGCTCTGGTACTCCACCCCCTTCAGTTTTAAATTCAAGCAACCCAGCAGCTTCAGGAACCATGCCACCATTTGGGGTCGACAGCCCTCCTAGTCTTAACAGCTCAACATCCTCTTCAGCTAGCTTGCGGCCCTCTGTTAGTTACATCTTTTTGGTAACAGCCTTGGTTACAAGAAAAATCGTTCTTAACATGTAG

Protein Analysis

638

Amino Acids

67.02

Weight (kDa)

8.43

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 426 - 495 7.3e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 779
Acc36I ACCTGC 2 cut(s) 451, 531
Acc65I GGTACC 1 cut(s) 1099
AccB1I GGYRCC 3 cut(s) 1099, 1183, 1231
AccB7I CCANNNNNTGG 2 cut(s) 1508, 1790
AccBSI CCGCTC 1 cut(s) 1296
AccI GTMKAC 2 cut(s) 1350, 1797
AciI CCGC 5 cut(s) 99, 451, 1262, 1296, 1846
AcoI YGGCCR 2 cut(s) 3, 1287
AcsI RAATTY 3 cut(s) 274, 649, 1750
AcuI CTGAAG 5 cut(s) 164, 741, 1725, 1755, 1818
AfaI GTAC 6 cut(s) 885, 1023, 1101, 1249, 1519, 1729
AfiI CCNNNNNNNGG 4 cut(s) 1508, 1703, 1709, 1790
AflIII ACRYGT 2 cut(s) 744, 1908
AgeI ACCGGT 1 cut(s) 1096
AgsI TTSAA 9 cut(s) 188, 247, 263, 291, 632, 816, 1039, 1426, 1755
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 3 cut(s) 1141, 1267, 1702
AjuI GAANNNNNNNTTGG 2 cut(s) 1495, 1527
AleI CACNNNNGTG 1 cut(s) 671
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 1724
AoxI GGCC 4 cut(s) 3, 253, 1287, 1847
ApeKI GCWGC 2 cut(s) 728, 1766
ApoI RAATTY 3 cut(s) 274, 649, 1750
AsiGI ACCGGT 1 cut(s) 1096
Asp718I GGTACC 1 cut(s) 1099
AspS9I GGNCC 2 cut(s) 253, 1848
AsuC2I CCSGG 1 cut(s) 1181
AsuHPI GGTGA 6 cut(s) 111, 377, 617, 927, 1086, 1590
AsuNHI GCTAGC 1 cut(s) 1838
BaeGI GKGCMC 2 cut(s) 678, 1074
BalI TGGCCA 2 cut(s) 5, 1289
BanI GGYRCC 3 cut(s) 1099, 1183, 1231
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 715, 1778
BccI CCATC 7 cut(s) 172, 581, 835, 1139, 1579, 1603, 1627
BciT130I CCWGG 3 cut(s) 1143, 1269, 1704
BcnI CCSGG 1 cut(s) 1181
BcoDI GTCTC 1 cut(s) 513
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 6 cut(s) 360, 435, 788, 1458, 1809, 1839
BfuAI ACCTGC 2 cut(s) 451, 531
BglII AGATCT 1 cut(s) 861
BisI GCNGC 3 cut(s) 729, 1767, 1847
BlsI GCNGC 3 cut(s) 730, 1768, 1848
BmcAI AGTACT 2 cut(s) 885, 1249
Bme1390I CCNGG 4 cut(s) 1143, 1181, 1269, 1704
BmgT120I GGNCC 2 cut(s) 253, 1848
BmiI GGNNCC 5 cut(s) 1101, 1185, 1233, 1266, 1777
BmrFI CCNGG 4 cut(s) 1143, 1181, 1269, 1704
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 4 cut(s) 357, 1310, 1592, 1616
BmtI GCTAGC 1 cut(s) 1842
BmuI ACTGGG 1 cut(s) 705
BoxI GACNNNNGTC 1 cut(s) 1214
BpmI CTGGAG 4 cut(s) 1212, 1349, 1587, 1656
BpuEI CTTGAG 2 cut(s) 874, 890
BpuMI CCSGG 1 cut(s) 1181
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 678, 1141, 1142, 1703, 1881
BsaWI WCCGGW 2 cut(s) 1096, 1627
Bsc4I CCNNNNNNNGG 4 cut(s) 1508, 1703, 1709, 1790
Bse118I RCCGGY 1 cut(s) 1096
Bse1I ACTGG 5 cut(s) 226, 711, 1151, 1448, 1513
BseBI CCWGG 3 cut(s) 1143, 1269, 1704
BseDI CCNNGG 5 cut(s) 678, 1141, 1142, 1703, 1881
BseGI GGATG 1 cut(s) 1826
BseLI CCNNNNNNNGG 4 cut(s) 1508, 1703, 1709, 1790
BseMII CTCAG 2 cut(s) 182, 438
BseNI ACTGG 5 cut(s) 226, 711, 1151, 1448, 1513
BseRI GAGGAG 3 cut(s) 1566, 1614, 1659
BseSI GKGCMC 2 cut(s) 678, 1074
BseXI GCAGC 2 cut(s) 715, 1778
BseYI CCCAGC 1 cut(s) 1762
BshFI GGCC 4 cut(s) 5, 255, 1289, 1849
BshNI GGYRCC 3 cut(s) 1099, 1183, 1231
BshTI ACCGGT 1 cut(s) 1096
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 4 cut(s) 1097, 1181, 1580, 1628
BslFI GGGAC 2 cut(s) 989, 1124
BslI CCNNNNNNNGG 4 cut(s) 1508, 1703, 1709, 1790
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 989, 1124
BsmI GAATGC 1 cut(s) 1421
BsnI GGCC 4 cut(s) 5, 255, 1289, 1849
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 506, 678, 1074
Bsp143I GATC 3 cut(s) 190, 339, 861
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 5 cut(s) 99, 451, 1262, 1296, 1846
BspANI GGCC 4 cut(s) 5, 255, 1289, 1849
BspCNI CTCAG 2 cut(s) 181, 437
BspLI GGNNCC 5 cut(s) 1101, 1185, 1233, 1266, 1777
BspMI ACCTGC 2 cut(s) 451, 531
BspOI GCTAGC 1 cut(s) 1842
BspT107I GGYRCC 3 cut(s) 1099, 1183, 1231
BspTNI GGTCTC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 1296
BsrFI RCCGGY 1 cut(s) 1096
BsrI ACTGG 5 cut(s) 226, 711, 1151, 1448, 1513
BssAI RCCGGY 1 cut(s) 1096
BssECI CCNNGG 5 cut(s) 678, 1141, 1142, 1703, 1881
BssMI GATC 3 cut(s) 190, 339, 861
BssT1I CCWWGG 2 cut(s) 678, 1881
Bst2UI CCWGG 3 cut(s) 1143, 1269, 1704
Bst4CI ACNGT 6 cut(s) 691, 1003, 1021, 1069, 1138, 1355
Bst6I CTCTTC 4 cut(s) 32, 511, 660, 1837
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstC8I GCNNGC 3 cut(s) 640, 1840, 1844
BstDEI CTNAG 2 cut(s) 168, 424
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 1826
BstKTI GATC 3 cut(s) 193, 342, 864
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 3 cut(s) 190, 339, 861
BstMWI GCNNNNNNNGC 6 cut(s) 11, 644, 734, 1238, 1319, 1418
BstNI CCWGG 3 cut(s) 1143, 1269, 1704
BstNSI RCATGY 2 cut(s) 748, 1912
BstPAI GACNNNNGTC 1 cut(s) 1214
BstSCI CCNGG 4 cut(s) 1141, 1179, 1267, 1702
BstSLI GKGCMC 2 cut(s) 678, 1074
BstV1I GCAGC 2 cut(s) 715, 1778
BstX2I RGATCY 1 cut(s) 861
BstXI CCANNNNNNTGG 1 cut(s) 1373
BstYI RGATCY 1 cut(s) 861
BsuRI GGCC 4 cut(s) 5, 255, 1289, 1849
BtgI CCRYGG 1 cut(s) 678
BtsCI GGATG 1 cut(s) 1826
BtsIMutI CAGTG 5 cut(s) 219, 666, 718, 999, 1506
BveI ACCTGC 2 cut(s) 451, 531
Cac8I GCNNGC 3 cut(s) 640, 1840, 1844
CaiI CAGNNNCTG 1 cut(s) 1724
Cfr10I RCCGGY 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 253, 1848
Csp6I GTAC 6 cut(s) 884, 1022, 1100, 1248, 1518, 1728
CspAI ACCGGT 1 cut(s) 1096
CspCI CAANNNNNGTGG 2 cut(s) 1068, 1103
CviQI GTAC 6 cut(s) 884, 1022, 1100, 1248, 1518, 1728
DdeI CTNAG 2 cut(s) 168, 424
DpnI GATC 3 cut(s) 192, 341, 863
DpnII GATC 3 cut(s) 190, 339, 861
DraI TTTAAA 1 cut(s) 1749
EaeI YGGCCR 2 cut(s) 3, 1287
Eam1104I CTCTTC 4 cut(s) 32, 511, 660, 1837
EarI CTCTTC 4 cut(s) 32, 511, 660, 1837
Eco130I CCWWGG 2 cut(s) 678, 1881
Eco31I GGTCTC 1 cut(s) 513
Eco32I GATATC 1 cut(s) 238
Eco57I CTGAAG 5 cut(s) 164, 741, 1725, 1755, 1818
EcoRII CCWGG 3 cut(s) 1141, 1267, 1702
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 678, 1881
EcoT22I ATGCAT 1 cut(s) 1423
ErhI CCWWGG 2 cut(s) 678, 1881
FaqI GGGAC 2 cut(s) 989, 1124
FauNDI CATATG 1 cut(s) 1417
FblI GTMKAC 2 cut(s) 1350, 1797
Fnu4HI GCNGC 3 cut(s) 729, 1767, 1847
FokI GGATG 1 cut(s) 1813
Fsp4HI GCNGC 3 cut(s) 729, 1767, 1847
FspBI CTAG 6 cut(s) 360, 435, 788, 1458, 1809, 1839
GluI GCNGC 3 cut(s) 729, 1767, 1847
GsaI CCCAGC 1 cut(s) 1766
GsuI CTGGAG 4 cut(s) 1212, 1349, 1587, 1656
HaeIII GGCC 4 cut(s) 5, 255, 1289, 1849
HapII CCGG 4 cut(s) 1097, 1181, 1580, 1628
HincII GTYRAC 1 cut(s) 1798
HindII GTYRAC 1 cut(s) 1798
HindIII AAGCTT 1 cut(s) 753
HpaII CCGG 4 cut(s) 1097, 1181, 1580, 1628
HphI GGTGA 6 cut(s) 111, 377, 617, 927, 1086, 1590
Hpy166II GTNNAC 4 cut(s) 440, 1351, 1358, 1798
Hpy188I TCNGA 5 cut(s) 144, 171, 303, 1306, 1440
Hpy188III TCNNGA 7 cut(s) 66, 694, 891, 907, 1207, 1219, 1773
Hpy8I GTNNAC 4 cut(s) 440, 1351, 1358, 1798
HpyAV CCTTC 3 cut(s) 879, 1703, 1749
HpyCH4III ACNGT 6 cut(s) 691, 1003, 1021, 1069, 1138, 1355
HpyCH4V TGCA 9 cut(s) 526, 647, 666, 716, 803, 830, 1241, 1421, 1454
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 644, 734, 1238, 1319, 1418
HpyF3I CTNAG 2 cut(s) 168, 424
KpnI GGTACC 1 cut(s) 1103
Kzo9I GATC 3 cut(s) 190, 339, 861
LmnI GCTCC 4 cut(s) 1036, 1261, 1298, 1368
Lsp1109I GCAGC 2 cut(s) 715, 1778
LweI GCATC 4 cut(s) 357, 1310, 1592, 1616
MaeI CTAG 6 cut(s) 360, 435, 788, 1458, 1809, 1839
MalI GATC 3 cut(s) 192, 341, 863
MbiI CCGCTC 1 cut(s) 1296
MboI GATC 3 cut(s) 190, 339, 861
MflI RGATCY 1 cut(s) 861
MhlI GDGCHC 3 cut(s) 506, 678, 1074
MlsI TGGCCA 2 cut(s) 5, 1289
MluCI AATT 5 cut(s) 274, 456, 593, 649, 1750
MluNI TGGCCA 2 cut(s) 5, 1289
MlyI GAGTC 4 cut(s) 186, 706, 926, 1203
MmeI TCCRAC 2 cut(s) 240, 1667
Mox20I TGGCCA 2 cut(s) 5, 1289
Mph1103I ATGCAT 1 cut(s) 1423
MscI TGGCCA 2 cut(s) 5, 1289
MseI TTAA 5 cut(s) 203, 459, 1748, 1815, 1905
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 2 cut(s) 5, 1289
MspA1I CMGCKG 1 cut(s) 1190
MspI CCGG 4 cut(s) 1097, 1181, 1580, 1628
MspR9I CCNGG 4 cut(s) 1143, 1181, 1269, 1704
Mva1269I GAATGC 1 cut(s) 1421
MvaI CCWGG 3 cut(s) 1143, 1269, 1704
MwoI GCNNNNNNNGC 6 cut(s) 11, 644, 734, 1238, 1319, 1418
NciI CCSGG 1 cut(s) 1181
NcoI CCATGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 1417
NdeII GATC 3 cut(s) 190, 339, 861
NheI GCTAGC 1 cut(s) 1838
NlaIV GGNNCC 5 cut(s) 1101, 1185, 1233, 1266, 1777
NmeAIII GCCGAG 1 cut(s) 905
NmuCI GTSAC 7 cut(s) 365, 536, 997, 1168, 1204, 1216, 1463
NsiI ATGCAT 1 cut(s) 1423
NspI RCATGY 2 cut(s) 748, 1912
OliI CACNNNNGTG 1 cut(s) 671
PasI CCCWGGG 1 cut(s) 1142
PciI ACATGT 2 cut(s) 744, 1908
PctI GAATGC 1 cut(s) 1421
PfeI GAWTC 7 cut(s) 172, 894, 1039, 1091, 1147, 1222, 1444
PflMI CCANNNNNTGG 2 cut(s) 1508, 1790
PfoI TCCNGGA 1 cut(s) 1267
PinAI ACCGGT 1 cut(s) 1096
PkrI GCNGC 3 cut(s) 730, 1768, 1848
PleI GAGTC 4 cut(s) 185, 705, 926, 1202
PpsI GAGTC 4 cut(s) 185, 705, 926, 1202
PscI ACATGT 2 cut(s) 744, 1908
PshAI GACNNNNGTC 1 cut(s) 1214
PsiI TTATAA 1 cut(s) 779
Psp6I CCWGG 3 cut(s) 1141, 1267, 1702
PspFI CCCAGC 1 cut(s) 1762
PspGI CCWGG 3 cut(s) 1141, 1267, 1702
PspN4I GGNNCC 5 cut(s) 1101, 1185, 1233, 1266, 1777
PspPI GGNCC 2 cut(s) 253, 1848
PstNI CAGNNNCTG 1 cut(s) 1724
PsuI RGATCY 1 cut(s) 861
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 6 cut(s) 885, 1023, 1101, 1249, 1519, 1729
RsaNI GTAC 6 cut(s) 884, 1022, 1100, 1248, 1518, 1728
RseI CAYNNNNRTG 1 cut(s) 671
SalI GTCGAC 1 cut(s) 1796
SaqAI TTAA 5 cut(s) 203, 459, 1748, 1815, 1905
SatI GCNGC 3 cut(s) 729, 1767, 1847
Sau3AI GATC 3 cut(s) 190, 339, 861
Sau96I GGNCC 2 cut(s) 253, 1848
ScaI AGTACT 2 cut(s) 885, 1249
SchI GAGTC 4 cut(s) 186, 706, 926, 1203
ScrFI CCNGG 4 cut(s) 1143, 1181, 1269, 1704
SduI GDGCHC 3 cut(s) 506, 678, 1074
SfaNI GCATC 4 cut(s) 357, 1310, 1592, 1616
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 2 cut(s) 889, 905
SmoI CTYRAG 2 cut(s) 889, 905
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 5 cut(s) 274, 456, 593, 649, 1750
SsiI CCGC 5 cut(s) 99, 451, 1262, 1296, 1846
SspI AATATT 1 cut(s) 583
SspMI CTAG 6 cut(s) 360, 435, 788, 1458, 1809, 1839
StyD4I CCNGG 4 cut(s) 1141, 1179, 1267, 1702
StyI CCWWGG 2 cut(s) 678, 1881
TaaI ACNGT 6 cut(s) 691, 1003, 1021, 1069, 1138, 1355
TaqI TCGA 3 cut(s) 175, 623, 1797
TasI AATT 5 cut(s) 274, 456, 593, 649, 1750
TatI WGTACW 3 cut(s) 883, 1247, 1517
TauI GCSGC 1 cut(s) 1849
TfiI GAWTC 7 cut(s) 172, 894, 1039, 1091, 1147, 1222, 1444
Tru1I TTAA 5 cut(s) 203, 459, 1748, 1815, 1905
Tru9I TTAA 5 cut(s) 203, 459, 1748, 1815, 1905
TscAI CASTG 5 cut(s) 226, 673, 718, 1006, 1513
TseFI GTSAC 7 cut(s) 365, 536, 997, 1168, 1204, 1216, 1463
TseI GCWGC 2 cut(s) 728, 1766
Tsp45I GTSAC 7 cut(s) 365, 536, 997, 1168, 1204, 1216, 1463
TspDTI ATGAA 4 cut(s) 51, 105, 936, 1503
TspRI CASTG 5 cut(s) 226, 673, 718, 1006, 1513
Van91I CCANNNNNTGG 2 cut(s) 1508, 1790
XapI RAATTY 3 cut(s) 274, 649, 1750
XceI RCATGY 2 cut(s) 748, 1912
XcmI CCANNNNNNNNNTGG 2 cut(s) 1084, 1275
XmiI GTMKAC 2 cut(s) 1350, 1797
XspI CTAG 6 cut(s) 360, 435, 788, 1458, 1809, 1839
ZrmI AGTACT 2 cut(s) 885, 1249
Zsp2I ATGCAT 1 cut(s) 1423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.