Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011574

Physical Location & Seq

Genomic Coordinates Forward (+)

2038846 .. 2040608

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0026100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCTGTCCTATGTCCTTTACACAAAAATAATTATACTATGGCTGTCATCACCCTTTTTTTCTTTCATCTCATTTATAACTCTGCTACAGTAGCAACCAATATCAATGGTGGCTTCAGCGCTCATCTTATCCAAAAAAATTCTCCAAATTCACCATTGCACCAACACAAAAACAACAAATTTTTTCGACGGTTGATGGGTCCAGACACGCCAGGATCACCAATGCAATTCGATGCAGGTAGTGGCTCACATATTATGAAGTTCTCAATGGGAACCCCGCTCTTCGATATTTATGCAATTGTTGATACAGGCAGCGATCTACTATGGACGCAATGCCAGCCTTGTCAAGGTTGCTACAAGAGCAACTTTGGCGTTTTTGACCCGAGAAAATCCTCAACTCATAAGAACATTACTTGTCGGTCAAGAGACTGTAGACTCCTCGACTCGTTATATGTATATGACTATTGTATACAAAAACCTACGGGAAATTGTGTTTATAGCTACGAGTATCTAGACGGGACAGGCTCAATGGGTCTATTGGGTAAAGAAACAGTTACCTTGACATCCACTACAGGTAAAGTTGTAGCCCTAAAAGATATTATTTTTGGGTGTGGGTATCAAAACAATGAATCTATTTCAAGTGGAAATATAATGGGAATGATTGGGCTTGGACGTGGGCCATTATCATTGATTTCTCAAATTTCTCCTTATGTTGGAGGCAAAAGATTCTCTTATTGCTTGGTGCAAGATCCCAAAATCCAAAGCAAGATCTATTTCGGGAATGGGAGTGAAGTTTTGGGTGAAGGAGTGGTGACAACCCCTATGGTCGATATTGAACCAAACGAGAATAGTTATCTTGTCACAGTATTAGGAATTACCATCGAAAATGAGTTTCTTTCTTTTAACTCAACTGGGACATTACTCAATAAAGGTAACATGAATGTCGATAGCGGTACATCTACGTCACGTTTACCACAAGACTTTTTTGACCGGATGGTGTCTCAGCTAAAAAAGGTAGTTAAATTGGAGTCATTCATATATACCAAGGATATGATGAGTCTCCTTTGCTTTAACTCCACGACGCCTCCAAAATTAACACCAATGGTTTTCCATTTTGAGGGTGGTAGCAAACTGCCGGTGGCGATGGACGAATTATTTTCTGAAGAAATGCCTGGGGCATTTTGCTTAGGAATTTCAAACATAACTAATGGGCATCAAGGTTATTTCGGAGGTTCTCTACAGACAAATCTCTTGATTGGTTTTGACTCTGATAAAAAAGTGATATCCTTCAAGCCAACTAATTGCGCAGACTTTAACAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

441

Amino Acids

48.52

Weight (kDa)

7.5

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	85 - 261	8.2e-48	Xylanase inhibitor N-terminal
Asp	PF00026	86 - 430	1.4e-10	Eukaryotic aspartyl protease
TAXi_C	PF14541	285 - 431	3.7e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08400 FvH4_6g08400 FvH4_6g08400 FvH4_6g08400
malus_domestica	MD04G1187200.v1.1 MD12G1200600.v1.1
prunus_persica	Prupe.6G305700_v2.0.a1
pyrus_communis	pycom04g16530 pycom12g18710
rosa_chinensis	RchiOBHm_Chr3g0458371
rosa_laevigata	RLG00000025165
rosa_multiflora	Rmu_sc0003967.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421140
rosa_rugosa	Rorug03G0026100 Rorug03G0026200
rosa_samantha	Rh3AG087100 Rh3BG089800 Rh3CG090200 Rh3DG090800
rosa_wichuraiana	Rw3G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc16I	TGCGCA	1 cut(s)	1306
Acc36I	ACCTGC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	280
AccI	GTMKAC	2 cut(s)	433, 469
AciI	CCGC	2 cut(s)	278, 951
AclWI	GGATC	2 cut(s)	223, 743
AcsI	RAATTY	5 cut(s)	139, 148, 179, 699, 1191
AcuI	CTGAAG	2 cut(s)	100, 1182
AcyI	GRCGYC	1 cut(s)	1082
AfaI	GTAC	1 cut(s)	955
AfeI	AGCGCT	1 cut(s)	121
AfiI	CCNNNNNNNGG	3 cut(s)	347, 713, 1117
AgsI	TTSAA	4 cut(s)	639, 836, 1197, 1291
AjiI	CACGTC	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	211, 1171
AluBI	AGCT	2 cut(s)	501, 1006
AluI	AGCT	2 cut(s)	501, 1006
Alw26I	GTCTC	3 cut(s)	420, 1005, 1064
AlwI	GGATC	2 cut(s)	223, 743
Ama87I	CYCGRG	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	121
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	5 cut(s)	139, 148, 179, 699, 1191
AspLEI	GCGC	2 cut(s)	122, 1307
AspS9I	GGNCC	2 cut(s)	200, 677
AsuHPI	GGTGA	5 cut(s)	43, 144, 210, 812, 823
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	4 cut(s)	190, 887, 988, 1138
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	213, 1173
BcoDI	GTCTC	3 cut(s)	420, 1005, 1064
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	4 cut(s)	87, 430, 570, 1238
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	227
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	213, 1173
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	674
BmgT120I	GGNCC	2 cut(s)	200, 677
BmiI	GGNNCC	2 cut(s)	201, 274
BmrFI	CCNGG	2 cut(s)	213, 1173
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	223, 1222
BmuI	ACTGGG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	1186
BsaHI	GRCGYC	1 cut(s)	1082
BsaJI	CCNNGG	2 cut(s)	1044, 1172
BsaWI	WCCGGW	1 cut(s)	990
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 713, 1117
Bse118I	RCCGGY	1 cut(s)	1135
Bse1I	ACTGG	1 cut(s)	916
Bse3DI	GCAATG	2 cut(s)	155, 338
BseBI	CCWGG	2 cut(s)	213, 1173
BseDI	CCNNGG	2 cut(s)	1044, 1172
BseGI	GGATG	2 cut(s)	563, 999
BseLI	CCNNNNNNNGG	3 cut(s)	347, 713, 1117
BseMI	GCAATG	2 cut(s)	155, 338
BseMII	CTCAG	1 cut(s)	1016
BseNI	ACTGG	1 cut(s)	916
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	991, 1136
BslFI	GGGAC	2 cut(s)	532, 928
BslI	CCNNNNNNNGG	3 cut(s)	347, 713, 1117
BsmAI	GTCTC	3 cut(s)	420, 1005, 1064
BsmFI	GGGAC	2 cut(s)	532, 928
BsnI	GGCC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	215, 316, 748, 768
BspACI	CCGC	2 cut(s)	278, 951
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	201, 274
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	2 cut(s)	223, 743
BspQI	GCTCTTC	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	155, 338
BsrFI	RCCGGY	1 cut(s)	1135
BsrI	ACTGG	1 cut(s)	916
BssAI	RCCGGY	1 cut(s)	1135
BssECI	CCNNGG	2 cut(s)	1044, 1172
BssMI	GATC	4 cut(s)	215, 316, 748, 768
BssNAI	GTATAC	1 cut(s)	470
BssNI	GRCGYC	1 cut(s)	1082
BssT1I	CCWWGG	1 cut(s)	1044
Bst1107I	GTATAC	1 cut(s)	470
Bst2UI	CCWGG	2 cut(s)	213, 1173
Bst4CI	ACNGT	5 cut(s)	91, 192, 431, 553, 865
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	1082
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	1002, 1186
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	563, 999
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 1307
BstKTI	GATC	4 cut(s)	218, 319, 751, 771
BstMAI	GTCTC	3 cut(s)	420, 1005, 1064
BstMBI	GATC	4 cut(s)	215, 316, 748, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 337, 360, 369
BstNI	CCWGG	2 cut(s)	213, 1173
BstSCI	CCNGG	2 cut(s)	211, 1171
BstSFI	CTRYAG	4 cut(s)	87, 430, 570, 1238
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	748, 768
BstYI	RGATCY	2 cut(s)	748, 768
BstZ17I	GTATAC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	679
BtgZI	GCGATG	1 cut(s)	1157
BtrI	CACGTC	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	563, 999
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	2 cut(s)	122, 1307
Cfr10I	RCCGGY	1 cut(s)	1135
Cfr13I	GGNCC	2 cut(s)	200, 677
CseI	GACGC	2 cut(s)	337, 1090
Csp6I	GTAC	1 cut(s)	954
CviAII	CATG	1 cut(s)	937
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	2 cut(s)	1002, 1186
DpnI	GATC	4 cut(s)	217, 318, 750, 770
DpnII	GATC	4 cut(s)	215, 316, 748, 768
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	1044
Eco32I	GATATC	1 cut(s)	1284
Eco47I	GGWCC	1 cut(s)	200
Eco47III	AGCGCT	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	100, 1182
Eco88I	CYCGRG	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	211, 1171
EcoRV	GATATC	1 cut(s)	1284
EcoT14I	CCWWGG	1 cut(s)	1044
ErhI	CCWWGG	1 cut(s)	1044
FaeI	CATG	1 cut(s)	940
FalI	AAGNNNNNCTT	4 cut(s)	350, 382, 715, 747
FaqI	GGGAC	2 cut(s)	532, 928
FatI	CATG	1 cut(s)	936
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	2 cut(s)	433, 469
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	2 cut(s)	550, 1006
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	512
FspI	TGCGCA	1 cut(s)	1306
GlaI	GCGC	2 cut(s)	121, 1306
GluI	GCNGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	2 cut(s)	991, 1136
HgaI	GACGC	2 cut(s)	337, 1090
HhaI	GCGC	2 cut(s)	122, 1307
Hin1I	GRCGYC	1 cut(s)	1082
Hin1II	CATG	1 cut(s)	940
Hin6I	GCGC	2 cut(s)	120, 1305
HinP1I	GCGC	2 cut(s)	120, 1305
HinfI	GANTC	7 cut(s)	435, 443, 629, 726, 1028, 1057, 1265
HpaII	CCGG	2 cut(s)	991, 1136
HphI	GGTGA	5 cut(s)	43, 144, 210, 812, 823
Hpy166II	GTNNAC	3 cut(s)	434, 470, 971
Hpy188I	TCNGA	3 cut(s)	1162, 1229, 1270
Hpy188III	TCNNGA	5 cut(s)	203, 423, 512, 778, 1252
Hpy8I	GTNNAC	3 cut(s)	434, 470, 971
Hpy99I	CGWCG	2 cut(s)	192, 1084
HpyAV	CCTTC	2 cut(s)	797, 1297
HpyCH4III	ACNGT	5 cut(s)	91, 192, 431, 553, 865
HpyCH4IV	ACGT	3 cut(s)	673, 962, 967
HpyCH4V	TGCA	5 cut(s)	160, 226, 236, 296, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 337, 360, 369
HpyF3I	CTNAG	2 cut(s)	1002, 1186
HpySE526I	ACGT	3 cut(s)	673, 962, 967
Hsp92I	GRCGYC	1 cut(s)	1082
Hsp92II	CATG	1 cut(s)	940
HspAI	GCGC	2 cut(s)	120, 1305
Kzo9I	GATC	4 cut(s)	215, 316, 748, 768
LguI	GCTCTTC	1 cut(s)	287
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	223, 1222
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	3 cut(s)	673, 962, 967
MaeIII	GTNAC	5 cut(s)	553, 811, 859, 932, 963
MalI	GATC	4 cut(s)	217, 318, 750, 770
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	4 cut(s)	215, 316, 748, 768
MboII	GAAGA	2 cut(s)	274, 1175
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	2 cut(s)	748, 768
MlyI	GAGTC	5 cut(s)	429, 437, 1037, 1066, 1259
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	6 cut(s)	403, 449, 710, 1095, 1111, 1223
MseI	TTAA	5 cut(s)	903, 1020, 1071, 1094, 1314
MspI	CCGG	2 cut(s)	991, 1136
MspR9I	CCNGG	2 cut(s)	213, 1173
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	213, 1173
MwoI	GCNNNNNNNGC	4 cut(s)	92, 337, 360, 369
NdeII	GATC	4 cut(s)	215, 316, 748, 768
NlaIII	CATG	1 cut(s)	940
NlaIV	GGNNCC	2 cut(s)	201, 274
NmuCI	GTSAC	3 cut(s)	811, 859, 963
NsbI	TGCGCA	1 cut(s)	1306
PciSI	GCTCTTC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	629, 726
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	5 cut(s)	429, 437, 1036, 1065, 1259
PpsI	GAGTC	5 cut(s)	429, 437, 1036, 1065, 1259
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	211, 1171
PspGI	CCWGG	2 cut(s)	211, 1171
PspN4I	GGNNCC	2 cut(s)	201, 274
PspPI	GGNCC	2 cut(s)	200, 677
PsuI	RGATCY	2 cut(s)	748, 768
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	903, 1020, 1071, 1094, 1314
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	215, 316, 748, 768
Sau96I	GGNCC	2 cut(s)	200, 677
SchI	GAGTC	5 cut(s)	429, 437, 1037, 1066, 1259
ScrFI	CCNGG	2 cut(s)	213, 1173
SfaNI	GCATC	2 cut(s)	223, 1222
SfcI	CTRYAG	4 cut(s)	87, 430, 570, 1238
SinI	GGWCC	1 cut(s)	200
SsiI	CCGC	2 cut(s)	278, 951
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	211, 1171
StyI	CCWWGG	1 cut(s)	1044
TaaI	ACNGT	5 cut(s)	91, 192, 431, 553, 865
TaiI	ACGT	3 cut(s)	676, 965, 970
TaqI	TCGA	7 cut(s)	187, 231, 285, 441, 828, 882, 945
TaqII	GACCGA	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	629, 726
Tru1I	TTAA	5 cut(s)	903, 1020, 1071, 1094, 1314
Tru9I	TTAA	5 cut(s)	903, 1020, 1071, 1094, 1314
TseFI	GTSAC	3 cut(s)	811, 859, 963
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	3 cut(s)	811, 859, 963
TspDTI	ATGAA	5 cut(s)	56, 272, 642, 953, 1024
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	5 cut(s)	139, 148, 179, 699, 1191
XbaI	TCTAGA	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XmiI	GTMKAC	2 cut(s)	433, 469
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.