Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011574

Physical Location & Seq

Genomic Coordinates Reverse (-)

42355412 .. 42358407

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCCAAATCAGCTTCTAAATGCCTCTTCTTATTCTTTCTGTCTTTCCTCTTTAGCTGTTCATCAGGAACTCTGGTAGGTTTCTCCTACCATGTTAGCGGAAACACTACAACTTCATCACCAAGTAGAACAATATCATTTCTGAAGCGAAACAAGATTGCCCCATCTCAGATTCGCGTCTTTGTTGAAGATCATAGAATTTTAAGAACTCTGTCCAACACTGGTGTAGCTGTTGATCTCTACTTGAATGAGGGCCATGTTCAAAATATCATAAATTCCAAATCTCCTTCAATCTCAGGGCTGAAATCCTATATAATGCCCTTTCTCTCACAAGTAAAGATCAAAAGCATCGTAGCAACTAGTGGTGACTATACAAGAAAATATGCTCTCTCCATGCTTTTATCCACCCTGAAATCTATACACTCAGTCCTCTCTAGTTTACCTGCTGACCGCAGAATTAAGGTCTCGGTGGCATTTCCTTTGTCATTTTTAGAGAATATGAGCACCTCACATGGAAGAGACCTGCATAGGATTTGTGACTACATCAAACAAGTGAAATCTGCTGTCATTGTAGAAGCCAATATTGATGGAGAATTGAGTATGGGTGAAAGGTTTGTCCATTCGATGATCGAAAGAGCCAGCCTTGCAAATTCTCTTCTTCCTTGCACTGATGTCCCCATGGTTTTGACAGTCAAGAGTCCAGCAGTTCCCAGTGCAACTGAAGTAGCTGCATTCGCCGATAAGGTGTCCAAAGCTTTAGAAACCAACACTCACATTATAAGTAGCATAGTTGGTCTATATGCACAAGTATCTTCAATGGAAGATTTTGCACAGAAAGAGATGAAAAGAGCAGAAGAACAGATCTTTCCTTCTTTTCGCCGAGTACTCTCAAGAATCTTCCACCTCAAGACTACTTTACATGAAGCAGATGACTCACCAACAATCTTCCCTACAACTCCCATATCTACAACACCACCAATATCCACCACTCCATATATTCCCACCCCAACTATTGTCACTGTCCCCTCAACAAACACAGTACCAATGGCTCCATTGAATCCTATACCCTCCACCACACCTATTACTGTGCCCTCCACAAACCCTGTGGATTCACCAGTACCAGAAGCCAATCCTACCACAGCACCCCCATCACAGTCCCAGGGAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

390

Amino Acids

42.4

Weight (kDa)

9.18

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08400 FvH4_6g08400 FvH4_6g08400 FvH4_6g08400
malus_domestica	MD04G1187200.v1.1 MD12G1200600.v1.1
prunus_persica	Prupe.6G305700_v2.0.a1
pyrus_communis	pycom04g16530 pycom12g18710
rosa_chinensis	RchiOBHm_Chr3g0458371
rosa_laevigata	RLG00000025165
rosa_multiflora	Rmu_sc0003967.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421140
rosa_rugosa	Rorug03G0026100 Rorug03G0026200
rosa_samantha	Rh3AG087100 Rh3BG089800 Rh3CG090200 Rh3DG090800
rosa_wichuraiana	Rw3G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	779
Acc36I	ACCTGC	2 cut(s)	451, 531
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	99, 451
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	198, 274, 649
AcuI	CTGAAG	2 cut(s)	164, 741
AfaI	GTAC	3 cut(s)	885, 1041, 1119
AgsI	TTSAA	6 cut(s)	188, 247, 263, 291, 816, 1057
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	1158
AluBI	AGCT	5 cut(s)	14, 57, 230, 728, 755
AluI	AGCT	5 cut(s)	14, 57, 230, 728, 755
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	469, 513
AoxI	GGCC	2 cut(s)	3, 253
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	3 cut(s)	198, 274, 649
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	5 cut(s)	111, 377, 617, 927, 1104
BaeGI	GKGCMC	1 cut(s)	1092
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	172, 581, 1156
BciT130I	CCWGG	1 cut(s)	1160
BcoDI	GTCTC	2 cut(s)	469, 513
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	360, 435
BfuAI	ACCTGC	2 cut(s)	451, 531
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
BmcAI	AGTACT	1 cut(s)	885
Bme1390I	CCNGG	1 cut(s)	1160
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	1050
BmrFI	CCNGG	1 cut(s)	1160
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	705
BpuEI	CTTGAG	2 cut(s)	874, 890
BsaI	GGTCTC	2 cut(s)	469, 513
BsaJI	CCNNGG	3 cut(s)	678, 1158, 1159
Bse1I	ACTGG	4 cut(s)	226, 711, 1115, 1168
BseBI	CCWGG	1 cut(s)	1160
BseDI	CCNNGG	3 cut(s)	678, 1158, 1159
BseMII	CTCAG	3 cut(s)	182, 309, 438
BseNI	ACTGG	4 cut(s)	226, 711, 1115, 1168
BseSI	GKGCMC	1 cut(s)	1092
BseXI	GCAGC	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	5, 255
BsiHKAI	GWGCWC	1 cut(s)	506
BslFI	GGGAC	3 cut(s)	659, 1007, 1141
BsmAI	GTCTC	2 cut(s)	469, 513
BsmFI	GGGAC	3 cut(s)	659, 1007, 1141
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	5, 255
Bso31I	GGTCTC	2 cut(s)	469, 513
Bsp1286I	GDGCHC	2 cut(s)	506, 1092
Bsp143I	GATC	5 cut(s)	190, 235, 339, 627, 861
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	2 cut(s)	99, 451
BspANI	GGCC	2 cut(s)	5, 255
BspCNI	CTCAG	3 cut(s)	181, 308, 437
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	1050
BspMI	ACCTGC	2 cut(s)	451, 531
BspTNI	GGTCTC	2 cut(s)	469, 513
BsrI	ACTGG	4 cut(s)	226, 711, 1115, 1168
BssECI	CCNNGG	3 cut(s)	678, 1158, 1159
BssMI	GATC	5 cut(s)	190, 235, 339, 627, 861
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	1160
Bst4CI	ACNGT	5 cut(s)	691, 1021, 1039, 1087, 1155
Bst6I	CTCTTC	3 cut(s)	32, 511, 660
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	3 cut(s)	168, 295, 424
BstDSI	CCRYGG	1 cut(s)	678
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	5 cut(s)	193, 238, 342, 630, 864
BstMAI	GTCTC	2 cut(s)	469, 513
BstMBI	GATC	5 cut(s)	190, 235, 339, 627, 861
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 644, 734
BstNI	CCWGG	1 cut(s)	1160
BstSCI	CCNGG	1 cut(s)	1158
BstSLI	GKGCMC	1 cut(s)	1092
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuRI	GGCC	2 cut(s)	5, 255
BtgI	CCRYGG	1 cut(s)	678
BtsIMutI	CAGTG	4 cut(s)	219, 666, 718, 1017
BveI	ACCTGC	2 cut(s)	451, 531
Cac8I	GCNNGC	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	884, 1040, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	1086, 1121
CviAII	CATG	6 cut(s)	92, 257, 394, 512, 679, 920
CviQI	GTAC	3 cut(s)	884, 1040, 1118
DdeI	CTNAG	3 cut(s)	168, 295, 424
DpnI	GATC	5 cut(s)	192, 237, 341, 629, 863
DpnII	GATC	5 cut(s)	190, 235, 339, 627, 861
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	32, 511, 660
EarI	CTCTTC	3 cut(s)	32, 511, 660
Eco130I	CCWWGG	1 cut(s)	678
Eco31I	GGTCTC	2 cut(s)	469, 513
Eco57I	CTGAAG	2 cut(s)	164, 741
EcoRII	CCWGG	1 cut(s)	1158
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	6 cut(s)	95, 260, 397, 515, 682, 923
FaqI	GGGAC	3 cut(s)	659, 1007, 1141
FatI	CATG	6 cut(s)	91, 256, 393, 511, 678, 919
Fnu4HI	GCNGC	1 cut(s)	729
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	360, 435
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	5, 255
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	95, 260, 397, 515, 682, 923
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	7 cut(s)	172, 697, 894, 932, 1057, 1109, 1164
HphI	GGTGA	5 cut(s)	111, 377, 617, 927, 1104
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	2 cut(s)	144, 171
Hpy188III	TCNNGA	4 cut(s)	66, 694, 891, 907
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	297, 879
HpyCH4III	ACNGT	5 cut(s)	691, 1021, 1039, 1087, 1155
HpyCH4V	TGCA	7 cut(s)	526, 647, 666, 716, 731, 803, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 644, 734
HpyF3I	CTNAG	3 cut(s)	168, 295, 424
Hsp92II	CATG	6 cut(s)	95, 260, 397, 515, 682, 923
Kzo9I	GATC	5 cut(s)	190, 235, 339, 627, 861
LmnI	GCTCC	1 cut(s)	1054
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	1 cut(s)	357
MaeI	CTAG	2 cut(s)	360, 435
MaeIII	GTNAC	3 cut(s)	365, 536, 1015
MalI	GATC	5 cut(s)	192, 237, 341, 629, 863
MboI	GATC	5 cut(s)	190, 235, 339, 627, 861
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	506, 1092
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	198, 274, 456, 593, 649
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	706, 926
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	35, 59, 244, 440, 517, 914, 1036, 1078, 1102
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	203, 459
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	1160
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	1160
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	11, 644, 734
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	5 cut(s)	190, 235, 339, 627, 861
NlaIII	CATG	6 cut(s)	95, 260, 397, 515, 682, 923
NlaIV	GGNNCC	1 cut(s)	1050
NmeAIII	GCCGAG	1 cut(s)	905
NmuCI	GTSAC	3 cut(s)	365, 536, 1015
PasI	CCCWGGG	1 cut(s)	1159
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	172, 894, 1057, 1109, 1164
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	2 cut(s)	705, 926
PpsI	GAGTC	2 cut(s)	705, 926
PsiI	TTATAA	1 cut(s)	779
Psp6I	CCWGG	1 cut(s)	1158
PspGI	CCWGG	1 cut(s)	1158
PspN4I	GGNNCC	1 cut(s)	1050
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	861
RsaI	GTAC	3 cut(s)	885, 1041, 1119
RsaNI	GTAC	3 cut(s)	884, 1040, 1118
SaqAI	TTAA	2 cut(s)	203, 459
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	5 cut(s)	190, 235, 339, 627, 861
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	885
SchI	GAGTC	2 cut(s)	706, 926
ScrFI	CCNGG	1 cut(s)	1160
SduI	GDGCHC	2 cut(s)	506, 1092
SfaNI	GCATC	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	889, 905
SmoI	CTYRAG	2 cut(s)	889, 905
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	5 cut(s)	198, 274, 456, 593, 649
SsiI	CCGC	2 cut(s)	99, 451
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	2 cut(s)	360, 435
StyD4I	CCNGG	1 cut(s)	1158
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	5 cut(s)	691, 1021, 1039, 1087, 1155
TaqI	TCGA	2 cut(s)	623, 630
TasI	AATT	5 cut(s)	198, 274, 456, 593, 649
TatI	WGTACW	1 cut(s)	883
TfiI	GAWTC	5 cut(s)	172, 894, 1057, 1109, 1164
Tru1I	TTAA	2 cut(s)	203, 459
Tru9I	TTAA	2 cut(s)	203, 459
TscAI	CASTG	4 cut(s)	226, 673, 718, 1024
TseFI	GTSAC	3 cut(s)	365, 536, 1015
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	3 cut(s)	365, 536, 1015
TspDTI	ATGAA	4 cut(s)	51, 105, 857, 936
TspRI	CASTG	4 cut(s)	226, 673, 718, 1024
XapI	RAATTY	3 cut(s)	198, 274, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1102
XspI	CTAG	2 cut(s)	360, 435
ZrmI	AGTACT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.