Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09142 |
| rosa_multiflora | Rmu_sc0006328.1_g000004 |
| rosa_rugosa | Rorug01G0294400 Rorug01G0294500 |
| rosa_samantha | Rh1AG303800 Rh1AG304000 Rh1AG304300 Rh1CG285200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 19, 256 |
| AciI | CCGC | 3 cut(s) | 38, 61, 80 |
| AclWI | GGATC | 2 cut(s) | 95, 318 |
| AfaI | GTAC | 2 cut(s) | 9, 287 |
| AflIII | ACRYGT | 1 cut(s) | 175 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| AlwI | GGATC | 2 cut(s) | 95, 318 |
| ApeKI | GCWGC | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 52 |
| BbvI | GCAGC | 1 cut(s) | 274 |
| BccI | CCATC | 1 cut(s) | 28 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BfaI | CTAG | 1 cut(s) | 373 |
| BfuAI | ACCTGC | 2 cut(s) | 19, 256 |
| BisI | GCNGC | 2 cut(s) | 81, 263 |
| BlsI | GCNGC | 2 cut(s) | 82, 264 |
| BmcAI | AGTACT | 1 cut(s) | 287 |
| BmsI | GCATC | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| BsaI | GGTCTC | 1 cut(s) | 41 |
| Bse118I | RCCGGY | 1 cut(s) | 368 |
| BseRI | GAGGAG | 1 cut(s) | 137 |
| BseXI | GCAGC | 1 cut(s) | 274 |
| BsiSI | CCGG | 1 cut(s) | 369 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| Bso31I | GGTCTC | 1 cut(s) | 41 |
| Bsp143I | GATC | 2 cut(s) | 100, 310 |
| BspACI | CCGC | 3 cut(s) | 38, 61, 80 |
| BspMI | ACCTGC | 2 cut(s) | 19, 256 |
| BspPI | GGATC | 2 cut(s) | 95, 318 |
| BspTNI | GGTCTC | 1 cut(s) | 41 |
| BsrFI | RCCGGY | 1 cut(s) | 368 |
| BssAI | RCCGGY | 1 cut(s) | 368 |
| BssMI | GATC | 2 cut(s) | 100, 310 |
| BstDEI | CTNAG | 2 cut(s) | 304, 357 |
| BstKTI | GATC | 2 cut(s) | 103, 313 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstMBI | GATC | 2 cut(s) | 100, 310 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 154 |
| BstNSI | RCATGY | 1 cut(s) | 179 |
| BstV1I | GCAGC | 1 cut(s) | 274 |
| BstX2I | RGATCY | 1 cut(s) | 100 |
| BstYI | RGATCY | 1 cut(s) | 100 |
| BveI | ACCTGC | 2 cut(s) | 19, 256 |
| Cfr10I | RCCGGY | 1 cut(s) | 368 |
| Csp6I | GTAC | 2 cut(s) | 8, 286 |
| CviAII | CATG | 2 cut(s) | 176, 278 |
| CviJI | RGCY | 1 cut(s) | 372 |
| CviKI_1 | RGCY | 1 cut(s) | 372 |
| CviQI | GTAC | 2 cut(s) | 8, 286 |
| DdeI | CTNAG | 2 cut(s) | 304, 357 |
| DpnI | GATC | 2 cut(s) | 102, 312 |
| DpnII | GATC | 2 cut(s) | 100, 310 |
| Eco31I | GGTCTC | 1 cut(s) | 41 |
| FaeI | CATG | 2 cut(s) | 179, 281 |
| FaiI | YATR | 3 cut(s) | 177, 260, 279 |
| FatI | CATG | 2 cut(s) | 175, 277 |
| FauI | CCCGC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 263 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 263 |
| FspBI | CTAG | 1 cut(s) | 373 |
| GluI | GCNGC | 2 cut(s) | 81, 263 |
| HapII | CCGG | 1 cut(s) | 369 |
| Hin1II | CATG | 2 cut(s) | 179, 281 |
| HincII | GTYRAC | 2 cut(s) | 173, 271 |
| HindII | GTYRAC | 2 cut(s) | 173, 271 |
| HinfI | GANTC | 3 cut(s) | 125, 181, 229 |
| HpaII | CCGG | 1 cut(s) | 369 |
| HphI | GGTGA | 1 cut(s) | 52 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 271 |
| Hpy188I | TCNGA | 1 cut(s) | 228 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 271 |
| HpyAV | CCTTC | 2 cut(s) | 14, 114 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyCH4V | TGCA | 4 cut(s) | 157, 221, 262, 335 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 154 |
| HpyF3I | CTNAG | 2 cut(s) | 304, 357 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 2 cut(s) | 179, 281 |
| Kzo9I | GATC | 2 cut(s) | 100, 310 |
| LpnPI | CCDG | 2 cut(s) | 24, 251 |
| Lsp1109I | GCAGC | 1 cut(s) | 274 |
| LweI | GCATC | 1 cut(s) | 230 |
| MaeI | CTAG | 1 cut(s) | 373 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MalI | GATC | 2 cut(s) | 102, 312 |
| MboI | GATC | 2 cut(s) | 100, 310 |
| MboII | GAAGA | 7 cut(s) | 40, 43, 65, 82, 85, 107, 110 |
| MflI | RGATCY | 1 cut(s) | 100 |
| MluCI | AATT | 1 cut(s) | 142 |
| MlyI | GAGTC | 1 cut(s) | 134 |
| MnlI | CCTC | 2 cut(s) | 115, 309 |
| MseI | TTAA | 1 cut(s) | 342 |
| MspI | CCGG | 1 cut(s) | 369 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 154 |
| NdeII | GATC | 2 cut(s) | 100, 310 |
| NlaIII | CATG | 2 cut(s) | 179, 281 |
| NspI | RCATGY | 1 cut(s) | 179 |
| PciI | ACATGT | 1 cut(s) | 175 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PfeI | GAWTC | 2 cut(s) | 181, 229 |
| PkrI | GCNGC | 2 cut(s) | 82, 264 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PscI | ACATGT | 1 cut(s) | 175 |
| PsuI | RGATCY | 1 cut(s) | 100 |
| RsaI | GTAC | 2 cut(s) | 9, 287 |
| RsaNI | GTAC | 2 cut(s) | 8, 286 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 2 cut(s) | 81, 263 |
| Sau3AI | GATC | 2 cut(s) | 100, 310 |
| ScaI | AGTACT | 1 cut(s) | 287 |
| SchI | GAGTC | 1 cut(s) | 134 |
| SetI | ASST | 6 cut(s) | 9, 13, 25, 142, 259, 270 |
| SfaNI | GCATC | 1 cut(s) | 230 |
| SmlI | CTYRAG | 1 cut(s) | 135 |
| SmoI | CTYRAG | 1 cut(s) | 135 |
| Sse9I | AATT | 1 cut(s) | 142 |
| SsiI | CCGC | 3 cut(s) | 38, 61, 80 |
| SspI | AATATT | 1 cut(s) | 340 |
| SspMI | CTAG | 1 cut(s) | 373 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TaqII | GACCGA | 2 cut(s) | 65, 303 |
| TasI | AATT | 1 cut(s) | 142 |
| TatI | WGTACW | 1 cut(s) | 285 |
| TauI | GCSGC | 1 cut(s) | 83 |
| TfiI | GAWTC | 2 cut(s) | 181, 229 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TseI | GCWGC | 1 cut(s) | 262 |
| XceI | RCATGY | 1 cut(s) | 179 |
| XspI | CTAG | 1 cut(s) | 373 |
| ZrmI | AGTACT | 1 cut(s) | 287 |