Rh1CG285200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019246
Physical Location & Seq
Reverse (-)
55643463 .. 55644701
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG285200.1

Sequence Viewer

Length: 585 bp
ATGGTGGGAGTTGACTATAAAGTCATCTATGCTTCCTCGGCTTTAGAGGCTGAGGGGGCCTTACTAGCTGTCCAAATAGCAGAAAAGCTTAAGCTTGAAGATTATGTTGTGGAAACTACTAGTCGGATTTTGAAGCAGCATATTGAGGAGAAGAAAATGAGGGACGGCTGTCTAGGATTATTAGGAGAGGAGCTCAAATTTCTAAATGGAAAGAGTCAGATTTTCTGGTCTAGAGCGAATCTCAATGCAAATCAAGCGGTGAGATTTGTGGCCCGTACTATTCTAGAAGGAAGAATAGATGCCGATCCCTCTAAATTGATGCGGAAAGTCCCATCTCCCTTAGCTGGATTGCTTATGGCAGAGGAAGCATTGGCTTGTGAAGATTTGCTGAATGTTATCCTCTGTGAAGTGTCTCATGAACCTGATGACACTCCTCATCAAGATCTCAAGACTACAGGATTGAAGTTTGGTAACAATCCTGATACGGGATTGAGAGGCAATAGTGGTCCAAGACTAGACAATATGCAGGAGGCTCACATCAGTGCCAAAGCACAACCTTATGCTCCAAGACATAGAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.44

Weight (kDa)

5.78

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09142
rosa_multiflora Rmu_sc0006328.1_g000004
rosa_rugosa Rorug01G0294400 Rorug01G0294500
rosa_samantha Rh1AG303800 Rh1AG304000 Rh1AG304300 Rh1CG285200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AciI CCGC 2 cut(s) 257, 322
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 344, 485
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 98, 133, 463
AhlI ACTAGT 1 cut(s) 119
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 5 cut(s) 68, 88, 94, 193, 344
AluI AGCT 5 cut(s) 68, 88, 94, 193, 344
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 57, 270
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 57, 271, 506
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 506
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 6 cut(s) 65, 120, 173, 231, 284, 515
BfmI CTRYAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 442
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 57, 271, 506
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 289, 309
BoxI GACNNNNGTC 1 cut(s) 168
BplI GAGNNNNNCTC 4 cut(s) 177, 209, 225, 257
Bpu10I CCTNAGC 2 cut(s) 51, 340
BpuEI CTTGAG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 485
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 344, 485
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 3 cut(s) 161, 203, 423
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 2 cut(s) 59, 272
BsiHKAI GWGCWC 1 cut(s) 195
BslFI GGGAC 2 cut(s) 176, 314
BslI CCNNNNNNNGG 2 cut(s) 344, 485
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 2 cut(s) 176, 314
BsnI GGCC 2 cut(s) 59, 272
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 304, 442
BspACI CCGC 2 cut(s) 257, 322
BspANI GGCC 2 cut(s) 59, 272
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 304, 442
BstAFI CTTAAG 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 51, 340
BstKTI GATC 2 cut(s) 307, 445
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 2 cut(s) 304, 442
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 65, 254, 365
BstPAI GACNNNNGTC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 59, 272
BtsIMutI CAGTG 1 cut(s) 547
CciI TCATGA 1 cut(s) 415
Cfr13I GGNCC 3 cut(s) 57, 271, 506
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 416
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 51, 340
DpnI GATC 2 cut(s) 306, 444
DpnII GATC 2 cut(s) 304, 442
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 419
FaiI YATR 9 cut(s) 18, 30, 105, 141, 356, 417, 524, 561, 573
FaqI GGGAC 2 cut(s) 176, 314
FatI CATG 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 6 cut(s) 65, 120, 173, 231, 284, 515
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 59, 272
Hin1II CATG 1 cut(s) 419
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 2 cut(s) 86, 92
HinfI GANTC 2 cut(s) 214, 238
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 126, 219
Hpy188III TCNNGA 6 cut(s) 231, 284, 416, 440, 448, 479
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 248, 526
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 65, 254, 365
HpyF3I CTNAG 2 cut(s) 51, 340
Hsp92II CATG 1 cut(s) 419
Kzo9I GATC 2 cut(s) 304, 442
LmnI GCTCC 2 cut(s) 190, 568
LpnPI CCDG 6 cut(s) 211, 330, 435, 441, 492, 512
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 289, 309
MaeI CTAG 6 cut(s) 65, 120, 173, 231, 284, 515
MaeIII GTNAC 1 cut(s) 470
MalI GATC 2 cut(s) 306, 444
MboI GATC 2 cut(s) 304, 442
MboII GAAGA 4 cut(s) 110, 163, 303, 392
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 197, 314
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 104
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 540
MspCI CTTAAG 1 cut(s) 89
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 65, 254, 365
NdeII GATC 2 cut(s) 304, 442
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 17
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 1 cut(s) 415
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PshAI GACNNNNGTC 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 3 cut(s) 57, 271, 506
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 2 cut(s) 304, 442
Sau96I GGNCC 3 cut(s) 57, 271, 506
SchI GAGTC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 195
SetI ASST 7 cut(s) 70, 90, 96, 195, 346, 424, 559
SfaNI GCATC 2 cut(s) 289, 309
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 89, 446
SmoI CTYRAG 2 cut(s) 89, 446
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 2 cut(s) 197, 314
SsiI CCGC 2 cut(s) 257, 322
SspMI CTAG 6 cut(s) 65, 120, 173, 231, 284, 515
SstI GAGCTC 1 cut(s) 195
TasI AATT 2 cut(s) 197, 314
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 547
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 432
TspRI CASTG 1 cut(s) 547
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 1 cut(s) 197
XbaI TCTAGA 2 cut(s) 230, 283
XspI CTAG 6 cut(s) 65, 120, 173, 231, 284, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.