Rh1AG304000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
53640837 .. 53642415
1579 bp
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UTR
Exon/CDS
Intron
Rh1AG304000.1

Sequence Viewer

Length: 186 bp
ATGATTTTTGCCATTGCATCAGCTCAGAAGGAAGTTCTTGGAGGTTCCAAGAAAGATGGTCTTGGGGTTGCTGACAAGAAAAGGCTTGATTGTTGGACTGCTCCATTGGATGGTATAATGAAGATTAACATTGATTCATTGTGGAGGAAGTTGGATACCAGATGTGTTCTAGCTGCACTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.62

Weight (kDa)

9.14

Isoelectric Point (pI)

25.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019246)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 110
AluBI AGCT 3 cut(s) 23, 173, 182
AluI AGCT 3 cut(s) 23, 173, 182
ApeKI GCWGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 160
BccI CCATC 2 cut(s) 50, 104
BciVI GTATCC 1 cut(s) 148
BfaI CTAG 2 cut(s) 170, 179
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 148
BtsCI GGATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 23, 85, 173, 182
CviKI_1 RGCY 4 cut(s) 23, 85, 173, 182
DdeI CTNAG 1 cut(s) 24
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 45, 77
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 2 cut(s) 170, 179
GluI GCNGC 1 cut(s) 174
HinfI GANTC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 17, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 24
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 26
MaeI CTAG 2 cut(s) 170, 179
MboII GAAGA 1 cut(s) 133
MmeI TCCRAC 2 cut(s) 74, 132
MnlI CCTC 2 cut(s) 35, 138
MseI TTAA 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 174
SetI ASST 4 cut(s) 25, 46, 175, 184
SfaNI GCATC 1 cut(s) 26
SgeI CNNG 7 cut(s) 50, 61, 74, 88, 98, 171, 182
SspMI CTAG 2 cut(s) 170, 179
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 126, 134
Van91I CCANNNNNTGG 1 cut(s) 110
XspI CTAG 2 cut(s) 170, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.