Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0019246

Physical Location & Seq

Genomic Coordinates Forward (+)

41013021 .. 41014834

Gene Structure 1814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0294500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAAGAGAAGATACCCACGCATGAGAGTGAAGAAGAAGACCACTGCGCACAACCTGCATGGACAGCAAAAAGTGTCCGATGAGCAGAGAAAGGAAATTGCAGATCTGAGTAATCTTGAAATAGCAGAGAGGCTGTGCAATTTCCAACGACACAGAAAATGTTTGGTGGTGCTCGATGATATTTGGACTCTTGATGCATGGAACTCTTTTAAAGGTGGATTTTCAGTGGATGAGGAAACTGAGAGCCGCATATTATTGACCACTCGCAACAGAGAAGTAGCTTCACTTGCAAGGGGAAATAGCTTACTCTACGAATCTCAGGCACTAAGTGCAGATGAAAGCTGGAATTTGTTTAGGAAGATAGCATTCTTTGGAAGGGATGATACAAATTCTCAAATTTATTCAAAGAAAGAAGAACCGGGAAAGAATATGCTTCATCATTGTGTAGGTTTGCCATTAGCTATTATCGTGCTCGCAGGACTACTAGCTAGAAAAGACACAATTGATGAGTGGGAAACTGTGCATAAGAATGTTAATGTATATATAAGGAGAGGCACAGACCTTGAACGAGAATACAAAGGTCAAAAATATGGAGGTGCTTCATGGGTCTTGGCACTCAGTTATGACAACTTACCATATCGCTTAAAGCTATGCTTTTTGTACTTAGCAAATTTTCCTGAAGACTATGAGATGCGGGTGAAAAGACTGACTCAGTTATGGATGGCAGAAGGTTTTATATCCACGACGTCGACAGAAATGATGGAAGATGTATCATATAGTTGCTTGAGTGAATTGGTGGAAAGGTGTATGGTTCAAGTTGTGGACATTGAAGTCAAAGAGAACGAGAATGTTTTGGGAATTTTTCAGATTATTTCCTCTTCTCCAAGAATGGAGTATATATACACATTGAGTTATACATTAAAGGATAAAACTATACAACAGAATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0045254 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

316

Amino Acids

36.82

Weight (kDa)

7.01

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	30 - 124	4.6e-18	NB-ARC domain
WHD_DRP	PF23559	225 - 277	1.6e-15	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09142
rosa_multiflora	Rmu_sc0006328.1_g000004
rosa_rugosa	Rorug01G0294400 Rorug01G0294500
rosa_samantha	Rh1AG303800 Rh1AG304000 Rh1AG304300 Rh1CG285200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	830
AatII	GACGTC	1 cut(s)	749
Acc16I	TGCGCA	1 cut(s)	48
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	2 cut(s)	247, 694
AcsI	RAATTY	5 cut(s)	346, 388, 396, 670, 858
AcuI	CTGAAG	1 cut(s)	699
AcyI	GRCGYC	1 cut(s)	746
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	119, 405, 566, 815, 830
AluBI	AGCT	6 cut(s)	281, 303, 342, 461, 488, 649
AluI	AGCT	6 cut(s)	281, 303, 342, 461, 488, 649
Alw21I	GWGCWC	2 cut(s)	174, 474
ApoI	RAATTY	5 cut(s)	346, 388, 396, 670, 858
AspLEI	GCGC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	709
BarI	GAAGNNNNNNTAC	3 cut(s)	28, 367, 399
BbsI	GAAGAC	2 cut(s)	44, 687
Bbv12I	GWGCWC	2 cut(s)	174, 474
BccI	CCATC	2 cut(s)	715, 754
BcnI	CCSGG	1 cut(s)	420
BfaI	CTAG	2 cut(s)	485, 489
BfuAI	ACCTGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	184, 681
BpiI	GAAGAC	2 cut(s)	44, 687
BpuEI	CTTGAG	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	746
BseGI	GGATG	3 cut(s)	235, 385, 726
BseMII	CTCAG	5 cut(s)	98, 231, 332, 631, 725
BsgI	GTGCAG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	174, 474
BsiSI	CCGG	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	174, 474
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	2 cut(s)	247, 694
BspCNI	CTCAG	5 cut(s)	99, 232, 331, 630, 724
BspMI	ACCTGC	1 cut(s)	63
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	746
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	883
BstACI	GRCGYC	1 cut(s)	746
BstAPI	GCANNNNNTGC	2 cut(s)	55, 329
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	7 cut(s)	107, 240, 318, 326, 617, 664, 711
BstF5I	GGATG	3 cut(s)	235, 385, 726
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 64, 287, 329
BstSCI	CCNGG	1 cut(s)	418
BstV2I	GAAGAC	2 cut(s)	44, 687
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	235, 385, 726
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 231
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	4 cut(s)	22, 59, 198, 603
CviJI	RGCY	8 cut(s)	133, 246, 281, 303, 342, 461, 488, 649
CviKI_1	RGCY	8 cut(s)	133, 246, 281, 303, 342, 461, 488, 649
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	7 cut(s)	107, 240, 318, 326, 617, 664, 711
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DraI	TTTAAA	1 cut(s)	211
DraIII	CACNNNGTG	1 cut(s)	329
DrdI	GACNNNNNNGTC	1 cut(s)	830
DseDI	GACNNNNNNGTC	1 cut(s)	830
Eam1104I	CTCTTC	1 cut(s)	883
EarI	CTCTTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	4 cut(s)	25, 62, 201, 606
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FatI	CATG	4 cut(s)	21, 58, 197, 602
FauI	CCCGC	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	3 cut(s)	242, 392, 733
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	2 cut(s)	485, 489
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	247
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	746
Hin1II	CATG	4 cut(s)	25, 62, 201, 606
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	3 cut(s)	187, 314, 709
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	2 cut(s)	750, 823
Hpy188I	TCNGA	3 cut(s)	79, 108, 867
Hpy188III	TCNNGA	3 cut(s)	116, 191, 677
Hpy8I	GTNNAC	2 cut(s)	750, 823
Hpy99I	CGWCG	2 cut(s)	748, 751
HpyAV	CCTTC	2 cut(s)	369, 722
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	7 cut(s)	58, 101, 138, 197, 290, 332, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 64, 287, 329
HpyF3I	CTNAG	7 cut(s)	107, 240, 318, 326, 617, 664, 711
HpySE526I	ACGT	1 cut(s)	746
Hsp92I	GRCGYC	1 cut(s)	746
Hsp92II	CATG	4 cut(s)	25, 62, 201, 606
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	68, 305, 328, 432, 462, 690
LweI	GCATC	2 cut(s)	184, 681
MaeI	CTAG	2 cut(s)	485, 489
MaeII	ACGT	1 cut(s)	746
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	501
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	174, 474
MluCI	AATT	9 cut(s)	96, 139, 346, 388, 396, 501, 670, 791, 858
MlyI	GAGTC	2 cut(s)	181, 703
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	123, 226, 545, 587, 886
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	4 cut(s)	210, 534, 644, 920
MslI	CAYNNNNRTG	3 cut(s)	26, 441, 528
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	55, 64, 287, 329
NciI	CCSGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	25, 62, 201, 606
NsbI	TGCGCA	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	199
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	248
PleI	GAGTC	2 cut(s)	181, 703
PpsI	GAGTC	2 cut(s)	181, 703
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	3 cut(s)	26, 441, 528
SalI	GTCGAC	1 cut(s)	748
SaqAI	TTAA	4 cut(s)	210, 534, 644, 920
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	181, 703
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	174, 474
SfaNI	GCATC	2 cut(s)	184, 681
SmiMI	CAYNNNNRTG	3 cut(s)	26, 441, 528
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	9 cut(s)	96, 139, 346, 388, 396, 501, 670, 791, 858
SsiI	CCGC	2 cut(s)	247, 694
SspMI	CTAG	2 cut(s)	485, 489
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	2 cut(s)	174, 749
TasI	AATT	9 cut(s)	96, 139, 346, 388, 396, 501, 670, 791, 858
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	4 cut(s)	210, 534, 644, 920
Tru9I	TTAA	4 cut(s)	210, 534, 644, 920
TscAI	CASTG	2 cut(s)	49, 231
TspDTI	ATGAA	4 cut(s)	17, 351, 425, 591
TspRI	CASTG	2 cut(s)	49, 231
XapI	RAATTY	5 cut(s)	346, 388, 396, 670, 858
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	2 cut(s)	485, 489
ZraI	GACGTC	1 cut(s)	747
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.