FvH4_6g09450

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011912
Physical Location & Seq
Reverse (-)
5617678 .. 5622013
4336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09450.t2

Sequence Viewer

Length: 1791 bp
ATGAATTCTTTGTTCAGAAAGGTTGTATTGTTCTCACTGCTCTGCGTGGTTCTGTTTGGGTATGCTACAGCCAAGTCTGAAGAAGAGGTTTCAAGGAAGTTGATTTCTGCTCCACACAAGAATGTGAGAACTAATGTTATTGATGGCACTGGTAATGAGAATACTATTAGTTTAGAGGATATAAATAATGGGGCAGGTGAGACAAAGAACGGGAACAGCAAAGTTTCAATCTCCACTGTTGCATTATTTACGCTGGCAATGGCTGCTGCCACTGGTTTAGGTGCAGTTCCATTCTTCTTTGTGGAGCTTGATCCACAGTGGGCTGGACTGTGCAATGGAATGGCAGCTGGTGTGATGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGCGCAGGGAATTGGGTGGTCTTTGGGCTTTTAGCTGGAGGAATATTTATTTTGCTCTGCAAGAAGTGTCTGGAACAATATGGAGAAGTTAGTATGTTGGACATTAAAGGTGCAGATGCAACTAAAGTAGTTCTTGTGATTGGAATAATGACTCTTCATTCATTTGGAGAAGGCTCTGGTGTTGGGGTTTCCTTTGCTGGTTCAAAGGGTTTCTCTCAGGGACTTTTGGTAACTTTGGCTATTGCTGTTCACAACATACCAGAAGGATTAGCAGTGAGTATGGTGCTCGCATCAAGGGGTGTTTCTCCACAGAATGCCATGTTATGGAGTGTAATTACGTCATTACCACAGCCCCTTGTAGCAGTTCCTTCATTCATGTGTGCTGATGCGTTTAGTAAGTTCCTTCCTTTCTGTACGGGCTTTGCTGCTGGATGTATGATTTGGATGGTTGTTGCAGAGGTGCTTCCTGATGCATTTAAGGAAGCCTCTCCATCACAAGTTGCATCTGCTGCTACTCTCTCTGTTGCATTCATGGAAGCACTTAGCACTGTTTTTCAGAGTTTCAGCCATGACTACAACTCAGAGGATGCTTCCGGCTTCTTTGTTTCATTGCTTTTTGGTCTTGGGCCATTGCTTGGTGGCATGGTCCTTGTGGCATTTGCACTTGCTTTCCGTTTCCAGCATGCTCTTCTCATGGGTGTAGCATCTGGCATTGCCTTTGTCCTTGGTGCCTGGCGACCATCACAGCTACTTTTCTCTTCAAAGATGGGATTTATTCCTCTGGTGTTGCTGCTTGCCTTGGGAGCTGCAACTGTCCATACTTTGAGCTCTAGTATTCTGAAGCTTGCAGGTCGCAAAAAAACTTCAGTTCATAATTTGCCCACAGTAACTGGTTTTCCGGTGAGTGTTCACACCCTCCAGTCATTCTTGTCATGTGGAGCTGTTGCTCTTCATGCTTTGGCTGAAGGGCTTGCTCTGGGGGTTGCTGCTCCAAAAGCCTATGGACTTGGTCGGCATATGGTTCTTCCTGTCTCCCTCCATGGACTCCCTCGGGGTGCAGCTGTGGCTAGTTGCATCTTCGGGGCTACAGATAACTGGCAGGGGTCTCTTGCAGCAGCTGCTCTAATTGGATTTATGGGTCCAATATCTGCAATTGGAGCAATACTTGCAGGAATTGACTATAGCGGTTTAGATCATGTCATGGTGTTTGCTTGTGGGGGACTACTCCCAAGTTTTGGAAGTGTACTAAGAAGAGCAGGGAGATTGGATGTGCGAAAAAGCACTTGTGGGCTTCTGATGGGTGTGGTGCTTGCAACTTTGTGTTTGACTTGCACCAAGTTGGTTTGCTTGCACACACCTTATTGCAATTCTGCACCAGAAGCCGTCAGATAG

Protein Analysis

597

Amino Acids

61.82

Weight (kDa)

7.89

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 87 - 209 2.3e-12 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08650 AT3G08650
fragaria_vesca FvH4_6g09450 FvH4_6g09450
malus_domestica MD04G1177600.v1.1 MD12G1192900.v1.1
prunus_persica Prupe.6G297500_v2.0.a1
pyrus_communis pycom04g15660 pycom12g17960
rosa_chinensis RchiOBHm_Chr3g0459921
rosa_laevigata RLG00000025051
rosa_multiflora Rmu_sc0000240.1_g000047 Rmu_sc0016534.1_g000002
rosa_roxburghii Rroxscaffold_6G00419910
rosa_rugosa Rorug03G0038800
rosa_samantha Rh3AG097400 Rh3BG100300 Rh3CG102100 Rh3DG101800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 2 cut(s) 185, 1238
AccB1I GGYRCC 1 cut(s) 1127
AccB7I CCANNNNNTGG 3 cut(s) 723, 1034, 1634
AciI CCGC 1 cut(s) 1584
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 4 cut(s) 99, 1248, 1259, 1383
AfaI GTAC 2 cut(s) 814, 1644
AfiI CCNNNNNNNGG 3 cut(s) 723, 1034, 1634
AgsI TTSAA 4 cut(s) 93, 228, 603, 1161
AjnI CCWGG 1 cut(s) 1130
Alw21I GWGCWC 2 cut(s) 687, 1229
Alw26I GTCTC 3 cut(s) 194, 1435, 1509
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 2 cut(s) 1289, 1517
Ama87I CYCGRG 1 cut(s) 1449
AoxI GGCC 1 cut(s) 1025
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 1025, 1045, 1538
AsuHPI GGTGA 2 cut(s) 209, 1312
AvaI CYCGRG 1 cut(s) 1449
AvaII GGWCC 2 cut(s) 1045, 1538
BanI GGYRCC 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 1229
Bbv12I GWGCWC 2 cut(s) 687, 1229
BccI CCATC 6 cut(s) 137, 838, 898, 1147, 1159, 1690
BceAI ACGGC 1 cut(s) 1766
BciT130I CCWGG 1 cut(s) 1132
BcoDI GTCTC 3 cut(s) 194, 1435, 1509
BfaI CTAG 2 cut(s) 1230, 1467
BfmI CTRYAG 3 cut(s) 66, 1485, 1579
BfuAI ACCTGC 2 cut(s) 185, 1238
Bme1390I CCNGG 1 cut(s) 1132
Bme18I GGWCC 2 cut(s) 1045, 1538
BmeT110I CYCGRG 1 cut(s) 1449
BmgT120I GGNCC 3 cut(s) 1025, 1045, 1538
BmiI GGNNCC 2 cut(s) 1129, 1539
BmrFI CCNGG 1 cut(s) 1132
BmsI GCATC 8 cut(s) 505, 698, 775, 859, 911, 976, 1112, 1482
BpmI CTGGAG 2 cut(s) 456, 1301
BsaI GGTCTC 1 cut(s) 1509
BsaJI CCNNGG 4 cut(s) 1123, 1197, 1438, 1448
BsaWI WCCGGW 1 cut(s) 1297
Bsc4I CCNNNNNNNGG 3 cut(s) 723, 1034, 1634
Bse1I ACTGG 5 cut(s) 154, 277, 1294, 1318, 1499
Bse3DI GCAATG 5 cut(s) 264, 340, 1007, 1028, 1110
BseBI CCWGG 1 cut(s) 1132
BseDI CCNNGG 4 cut(s) 1123, 1197, 1438, 1448
BseGI GGATG 4 cut(s) 836, 849, 991, 1672
BseLI CCNNNNNNNGG 3 cut(s) 723, 1034, 1634
BseMI GCAATG 5 cut(s) 264, 340, 1007, 1028, 1110
BseMII CTCAG 2 cut(s) 629, 993
BseNI ACTGG 5 cut(s) 154, 277, 1294, 1318, 1499
BsgI GTGCAG 4 cut(s) 303, 531, 1476, 1755
BshFI GGCC 1 cut(s) 1027
BshNI GGYRCC 1 cut(s) 1127
BsiHKAI GWGCWC 2 cut(s) 687, 1229
BsiHKCI CYCGRG 1 cut(s) 1449
BsiSI CCGG 2 cut(s) 993, 1298
BslFI GGGAC 2 cut(s) 633, 1632
BslI CCNNNNNNNGG 3 cut(s) 723, 1034, 1634
BsmAI GTCTC 3 cut(s) 194, 1435, 1509
BsmFI GGGAC 2 cut(s) 633, 1632
BsmI GAATGC 2 cut(s) 718, 926
BsnI GGCC 1 cut(s) 1027
Bso31I GGTCTC 1 cut(s) 1509
BsoBI CYCGRG 1 cut(s) 1449
Bsp1286I GDGCHC 2 cut(s) 687, 1229
Bsp143I GATC 3 cut(s) 310, 373, 1591
Bsp19I CCATGG 1 cut(s) 1438
BspACI CCGC 1 cut(s) 1584
BspANI GGCC 1 cut(s) 1027
BspCNI CTCAG 2 cut(s) 628, 992
BspLI GGNNCC 2 cut(s) 1129, 1539
BspMI ACCTGC 2 cut(s) 185, 1238
BspPI GGATC 1 cut(s) 305
BspQI GCTCTTC 3 cut(s) 1092, 1353, 1645
BspT107I GGYRCC 1 cut(s) 1127
BspTNI GGTCTC 1 cut(s) 1509
BsrDI GCAATG 5 cut(s) 264, 340, 1007, 1028, 1110
BsrI ACTGG 5 cut(s) 154, 277, 1294, 1318, 1499
BssECI CCNNGG 4 cut(s) 1123, 1197, 1438, 1448
BssMI GATC 3 cut(s) 310, 373, 1591
BssT1I CCWWGG 3 cut(s) 1123, 1197, 1438
Bst2UI CCWGG 1 cut(s) 1132
Bst4CI ACNGT 6 cut(s) 238, 318, 330, 949, 1213, 1285
Bst6I CTCTTC 6 cut(s) 78, 558, 1092, 1162, 1353, 1645
BstAPI GCANNNNNTGC 4 cut(s) 263, 908, 1517, 1565
BstC8I GCNNGC 9 cut(s) 255, 367, 687, 1083, 1194, 1245, 1371, 1710, 1748
BstDEI CTNAG 4 cut(s) 615, 941, 979, 1646
BstDSI CCRYGG 1 cut(s) 1438
BstF5I GGATG 4 cut(s) 836, 849, 991, 1672
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 313, 376, 1594
BstMAI GTCTC 3 cut(s) 194, 1435, 1509
BstMBI GATC 3 cut(s) 310, 373, 1591
BstNI CCWGG 1 cut(s) 1132
BstNSI RCATGY 1 cut(s) 1085
BstSCI CCNGG 1 cut(s) 1130
BstSFI CTRYAG 3 cut(s) 66, 1485, 1579
BsuRI GGCC 1 cut(s) 1027
BtgI CCRYGG 1 cut(s) 1438
BtsCI GGATG 4 cut(s) 836, 849, 991, 1672
BtsI GCAGTG 2 cut(s) 35, 678
BtsIMutI CAGTG 7 cut(s) 35, 147, 234, 270, 323, 678, 945
BveI ACCTGC 2 cut(s) 185, 1238
Cac8I GCNNGC 9 cut(s) 255, 367, 687, 1083, 1194, 1245, 1371, 1710, 1748
CaiI CAGNNNCTG 2 cut(s) 1289, 1517
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 3 cut(s) 1025, 1045, 1538
Csp6I GTAC 2 cut(s) 813, 1643
CviQI GTAC 2 cut(s) 813, 1643
DdeI CTNAG 4 cut(s) 615, 941, 979, 1646
DpnI GATC 3 cut(s) 312, 375, 1593
DpnII GATC 3 cut(s) 310, 373, 1591
Eam1104I CTCTTC 6 cut(s) 78, 558, 1092, 1162, 1353, 1645
EarI CTCTTC 6 cut(s) 78, 558, 1092, 1162, 1353, 1645
Ecl136II GAGCTC 1 cut(s) 1227
Eco130I CCWWGG 3 cut(s) 1123, 1197, 1438
Eco24I GRGCYC 1 cut(s) 1229
Eco31I GGTCTC 1 cut(s) 1509
Eco47I GGWCC 2 cut(s) 1045, 1538
Eco53kI GAGCTC 1 cut(s) 1227
Eco57I CTGAAG 4 cut(s) 99, 1248, 1259, 1383
Eco88I CYCGRG 1 cut(s) 1449
EcoICRI GAGCTC 1 cut(s) 1227
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 1130
EcoT14I CCWWGG 3 cut(s) 1123, 1197, 1438
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 1229
ErhI CCWWGG 3 cut(s) 1123, 1197, 1438
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 2 cut(s) 633, 1632
FauNDI CATATG 1 cut(s) 1416
FokI GGATG 4 cut(s) 843, 856, 998, 1679
FriOI GRGCYC 1 cut(s) 1229
FspBI CTAG 2 cut(s) 1230, 1467
GlaI GCGC 1 cut(s) 403
GsuI CTGGAG 2 cut(s) 456, 1301
HaeIII GGCC 1 cut(s) 1027
HapII CCGG 2 cut(s) 993, 1298
HhaI GCGC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HindIII AAGCTT 2 cut(s) 367, 1241
HinfI GANTC 2 cut(s) 550, 1443
HpaII CCGG 2 cut(s) 993, 1298
HphI GGTGA 2 cut(s) 209, 1312
Hpy166II GTNNAC 3 cut(s) 649, 1309, 1643
Hpy188I TCNGA 7 cut(s) 17, 79, 957, 982, 1239, 1695, 1787
Hpy188III TCNNGA 2 cut(s) 470, 866
Hpy8I GTNNAC 3 cut(s) 649, 1309, 1643
HpyAV CCTTC 6 cut(s) 380, 563, 656, 777, 812, 1358
HpyCH4III ACNGT 6 cut(s) 238, 318, 330, 949, 1213, 1285
HpyCH4IV ACGT 1 cut(s) 737
HpyF3I CTNAG 4 cut(s) 615, 941, 979, 1646
HpySE526I ACGT 1 cut(s) 737
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 310, 373, 1591
LguI GCTCTTC 3 cut(s) 1092, 1353, 1645
LmnI GCTCC 6 cut(s) 115, 304, 1202, 1337, 1393, 1556
LweI GCATC 8 cut(s) 505, 698, 775, 859, 911, 976, 1112, 1482
MaeI CTAG 2 cut(s) 1230, 1467
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 2 cut(s) 628, 1285
MalI GATC 3 cut(s) 312, 375, 1593
MboI GATC 3 cut(s) 310, 373, 1591
MfeI CAATTG 1 cut(s) 1551
MhlI GDGCHC 2 cut(s) 687, 1229
MluCI AATT 8 cut(s) 4, 409, 732, 1273, 1524, 1551, 1572, 1765
MlyI GAGTC 2 cut(s) 544, 1437
MmeI TCCRAC 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 874
MseI TTAA 2 cut(s) 504, 876
MslI CAYNNNNRTG 2 cut(s) 120, 775
MspA1I CMGCKG 3 cut(s) 347, 1460, 1517
MspI CCGG 2 cut(s) 993, 1298
MspR9I CCNGG 1 cut(s) 1132
MunI CAATTG 1 cut(s) 1551
Mva1269I GAATGC 2 cut(s) 718, 926
MvaI CCWGG 1 cut(s) 1132
NcoI CCATGG 1 cut(s) 1438
NdeI CATATG 1 cut(s) 1416
NdeII GATC 3 cut(s) 310, 373, 1591
NlaIV GGNNCC 2 cut(s) 1129, 1539
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 1 cut(s) 1085
PaeI GCATGC 1 cut(s) 1085
PaqCI CACCTGC 1 cut(s) 185
PciSI GCTCTTC 3 cut(s) 1092, 1353, 1645
PctI GAATGC 2 cut(s) 718, 926
PflFI GACNNNGTC 1 cut(s) 1407
PflMI CCANNNNNTGG 3 cut(s) 723, 1034, 1634
PleI GAGTC 2 cut(s) 544, 1437
PpsI GAGTC 2 cut(s) 544, 1437
Psp124BI GAGCTC 1 cut(s) 1229
Psp6I CCWGG 1 cut(s) 1130
PspGI CCWGG 1 cut(s) 1130
PspN4I GGNNCC 2 cut(s) 1129, 1539
PspPI GGNCC 3 cut(s) 1025, 1045, 1538
PstNI CAGNNNCTG 2 cut(s) 1289, 1517
PsyI GACNNNGTC 1 cut(s) 1407
PvuII CAGCTG 3 cut(s) 347, 1460, 1517
RsaI GTAC 2 cut(s) 814, 1644
RsaNI GTAC 2 cut(s) 813, 1643
RseI CAYNNNNRTG 2 cut(s) 120, 775
SacI GAGCTC 1 cut(s) 1229
SapI GCTCTTC 3 cut(s) 1092, 1353, 1645
SaqAI TTAA 2 cut(s) 504, 876
Sau3AI GATC 3 cut(s) 310, 373, 1591
Sau96I GGNCC 3 cut(s) 1025, 1045, 1538
SchI GAGTC 2 cut(s) 544, 1437
ScrFI CCNGG 1 cut(s) 1132
SduI GDGCHC 2 cut(s) 687, 1229
SfaNI GCATC 8 cut(s) 505, 698, 775, 859, 911, 976, 1112, 1482
SfcI CTRYAG 3 cut(s) 66, 1485, 1579
SinI GGWCC 2 cut(s) 1045, 1538
SmiMI CAYNNNNRTG 2 cut(s) 120, 775
SphI GCATGC 1 cut(s) 1085
Sse9I AATT 8 cut(s) 4, 409, 732, 1273, 1524, 1551, 1572, 1765
SsiI CCGC 1 cut(s) 1584
SspI AATATT 1 cut(s) 444
SspMI CTAG 2 cut(s) 1230, 1467
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 1 cut(s) 1130
StyI CCWWGG 3 cut(s) 1123, 1197, 1438
TaaI ACNGT 6 cut(s) 238, 318, 330, 949, 1213, 1285
TaiI ACGT 1 cut(s) 740
TasI AATT 8 cut(s) 4, 409, 732, 1273, 1524, 1551, 1572, 1765
TatI WGTACW 1 cut(s) 1642
Tru1I TTAA 2 cut(s) 504, 876
Tru9I TTAA 2 cut(s) 504, 876
TscAI CASTG 7 cut(s) 42, 154, 241, 277, 323, 678, 952
TspDTI ATGAA 9 cut(s) 17, 545, 549, 759, 763, 919, 996, 1259, 1340
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 7 cut(s) 42, 154, 241, 277, 323, 678, 952
Tth111I GACNNNGTC 1 cut(s) 1407
Van91I CCANNNNNTGG 3 cut(s) 723, 1034, 1634
VpaK11BI GGWCC 2 cut(s) 1045, 1538
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 1085
XspI CTAG 2 cut(s) 1230, 1467
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.