MD04G1177600.v1.1

Zinc transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
26879131 .. 26883441
4311 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1177600.v1.1.491

Sequence Viewer

Length: 1806 bp
ATGGAGTTCACATTTAGAAAAGCTCTATTATTTTCGCTGTTCTCCCTAGTTCTCTTTGCGTACGCTACATCAGAGATTGAAAATGAAGTTTCGCAAAAGCTGAGATCTGCTCCACACAAAAATGTGAGAAGTAATGTTATTGATGGCACTGGTCAGGAGAATACCATAAATTTTGAGGTTTTAAATAATGGACTGGGTGAGGTGAAGAGCGCAAACAGCAAAGTCTCAGTCTCTACTGTTGCGTTATTTACGTTGGCAATGGCTGCTGCCACAGGTTTAGGTGCAGTTCCATTCTTCTTTGTTGAGCTTGATCCACAATGGGCAGGATTATGCAATGGGATGGCTGCTGGTGTAATGTTGGCTGCAAGCTTTGATCTTGTACAGGAAGGACAAGGCCATGGTGCACAAGGTCATGGTGCTGGGAATTGGGTTGTTATTGGGCTTTTAGCTGGGGGCCTTTTTATTTGGCTATGCAAACAGTTTCTTGAGCAATACGGAGAAGTTAGTATGTTAGACATCAAAGGTGCAGATGCAACTAAAGTCGTTCTTGTGATTGGAATAATGACTCTTCATTCATTTGGGGAGGGCTCTGGTGTTGGGGTTTCCTTTGCTGGCTCAAAGGGTTTCACTCAGGGCCTTTTGGTTACTTTGGCTATTGCTGTGCACAATATACCAGAAGGCTTAGCTGTGAGTATGGTGCTTGCATCCAGGGGTGTTTCTCCGCAGAATGCCATGTTATGGAGCGTAATTACATCATTACCACAGCCCCTGGTAGCAGTTCCTTCATTCATATGCGCTGATGCGTTTAGCAAGTTCCTTCCTTTCTGTACGGGCTTTGCTGCTGGATGTATGATCTGGATGGTTGTTGCGGAGGTGCTTCCTGATGCATTTAAGGAAGCCTCTCCATCACAGGTTGCGTCAGCAGCTACTCTCTCTGTTGCATTCATGGAAGCTCTTAGCACTTTTTTTCAGAACTTCACCCATGATTACAACTCAGAGGATGCTTCTGGCTTCTTTGTGTCATTACTTTTTGGTCTTGGACCATTGCTCGGTGGCACTGTTCTTGTCGCCTTTGCATTAGCTTTCCATCTTCAGCATGCTCTTCTGATGGGTGCAGCATCTGGCATTGCCTTTGTCCTTGGTGCCTGGAGACCATTGCAGCTACTTTTTTCGTTAAAGATGGGATTTATATCTGCTACATTTCTGCTTGCAATGGGAGCTGGATCCGTCCACATTTTGAGCTCTAGTATTCTGAAGCTCGCAGGTCGCAAAAAAACTTCGGCTCATAACTTACCCACAGCAAATGGTTTTCCAGTGAGTATTCACACCCTCCAGGCATTCTTGTCATGTGGAGCAGTTGCCTTCCATGCTTTGGCTGAAGGGCTTGCACTAGGGGTCGCTGCACCAAAAGCTTATGGACTCGGGCGACACATGGTCCTTCCTGTCTCCCTACATGGACTCCCTCGGGGTGCAGCTGTGGCTAGCTGCATATTTGGGGCTACTGATAACTGGCATGCGGCCCTTGTGGCAGCTGCTTTAATTGGATTCGTGGGTCCAATATCTGCAATAGGAGCAATACTCGCAGGAATTGATTATAGCGGATTAGACCATGTGATGGTTTTTGCTTGTGGGGGACTGCTCCCGAGTTTTGCAAATGTAGTAAAGAGAGCGGTGAAGTTGGATACACGTAGAAGTAGCTGTGGGATTCTGATTGGTGTGGGTTTTGCAACTCTGTGTCTGACTTGCACGAAGTTGGTGTGCTTGCACACACCTTATTGCAATTCTGCACCAGAGGCCGTCAGATGA

Protein Analysis

602

Amino Acids

62.54

Weight (kDa)

6.98

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 178 - 301 6.5e-12 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011912)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1253
AccB1I GGYRCC 1 cut(s) 1142
AccB7I CCANNNNNTGG 3 cut(s) 738, 1372, 1615
AccBSI CCGCTC 1 cut(s) 1670
AciI CCGC 5 cut(s) 722, 869, 1517, 1599, 1670
AclWI GGATC 3 cut(s) 305, 1218, 1231
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 3 cut(s) 1076, 1274, 1398
AfaI GTAC 3 cut(s) 62, 381, 829
AfiI CCNNNNNNNGG 4 cut(s) 738, 1049, 1372, 1615
AflIII ACRYGT 1 cut(s) 1685
AgsI TTSAA 1 cut(s) 80
AhdI GACNNNNNGTC 1 cut(s) 1433
AjnI CCWGG 4 cut(s) 707, 768, 1145, 1332
Alw21I GWGCWC 3 cut(s) 406, 666, 1244
Alw26I GTCTC 4 cut(s) 229, 235, 1144, 1450
Alw44I GTGCAC 2 cut(s) 402, 662
AlwI GGATC 3 cut(s) 305, 1218, 1231
AlwNI CAGNNNCTG 2 cut(s) 769, 1121
Ama87I CYCGRG 3 cut(s) 1421, 1464, 1642
AoxI GGCC 5 cut(s) 394, 454, 634, 1518, 1794
ApaLI GTGCAC 2 cut(s) 402, 662
ApoI RAATTY 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 2 cut(s) 212, 797
AspS9I GGNCC 6 cut(s) 454, 634, 1040, 1435, 1519, 1553
AsuHPI GGTGA 4 cut(s) 209, 214, 970, 1684
AsuNHI GCTAGC 1 cut(s) 1481
AvaI CYCGRG 3 cut(s) 1421, 1464, 1642
AvaII GGWCC 3 cut(s) 1040, 1435, 1553
BaeGI GKGCMC 2 cut(s) 406, 666
BamHI GGATCC 1 cut(s) 1223
BanI GGYRCC 1 cut(s) 1142
BanII GRGCYC 2 cut(s) 590, 1244
Bbv12I GWGCWC 3 cut(s) 406, 666, 1244
BccI CCATC 8 cut(s) 137, 334, 853, 913, 1095, 1102, 1174, 1609
BceAI ACGGC 1 cut(s) 1781
BciT130I CCWGG 4 cut(s) 709, 770, 1147, 1334
BciVI GTATCC 1 cut(s) 1675
BcoDI GTCTC 4 cut(s) 229, 235, 1144, 1450
BfaI CTAG 4 cut(s) 47, 1245, 1391, 1482
BfuAI ACCTGC 1 cut(s) 1253
BfuI GTATCC 1 cut(s) 1675
BglI GCCNNNNNGGC 1 cut(s) 1526
BglII AGATCT 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 682
Bme1390I CCNGG 4 cut(s) 709, 770, 1147, 1334
Bme18I GGWCC 3 cut(s) 1040, 1435, 1553
BmeRI GACNNNNNGTC 1 cut(s) 1433
BmeT110I CYCGRG 3 cut(s) 1421, 1464, 1642
BmgT120I GGNCC 6 cut(s) 454, 634, 1040, 1435, 1519, 1553
BmiI GGNNCC 4 cut(s) 455, 1144, 1225, 1554
BmrFI CCNGG 4 cut(s) 709, 770, 1147, 1334
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 6 cut(s) 520, 713, 790, 874, 991, 1127
BmtI GCTAGC 1 cut(s) 1485
BmuI ACTGGG 1 cut(s) 203
BplI GAGNNNNNCTC 4 cut(s) 94, 126, 1563, 1595
BpmI CTGGAG 2 cut(s) 1168, 1316
Bpu1102I GCTNAGC 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 506
BsaAI YACGTR 1 cut(s) 1688
BsaBI GATNNNNATC 1 cut(s) 1189
BsaI GGTCTC 1 cut(s) 1144
BsaJI CCNNGG 5 cut(s) 397, 708, 768, 1138, 1463
BsaXI ACNNNNNCTCC 2 cut(s) 1443, 1473
Bsc4I CCNNNNNNNGG 4 cut(s) 738, 1049, 1372, 1615
Bse1I ACTGG 4 cut(s) 154, 198, 1313, 1514
Bse3DI GCAATG 6 cut(s) 264, 340, 1043, 1125, 1154, 1218
Bse8I GATNNNNATC 1 cut(s) 1189
BseBI CCWGG 4 cut(s) 709, 770, 1147, 1334
BseDI CCNNGG 5 cut(s) 397, 708, 768, 1138, 1463
BseGI GGATG 5 cut(s) 345, 704, 851, 864, 1006
BseJI GATNNNNATC 1 cut(s) 1189
BseLI CCNNNNNNNGG 4 cut(s) 738, 1049, 1372, 1615
BseMI GCAATG 6 cut(s) 264, 340, 1043, 1125, 1154, 1218
BseMII CTCAG 4 cut(s) 92, 240, 644, 1008
BseNI ACTGG 4 cut(s) 154, 198, 1313, 1514
BseSI GKGCMC 2 cut(s) 406, 666
BseYI CCCAGC 2 cut(s) 419, 449
BsgI GTGCAG 6 cut(s) 303, 546, 1134, 1386, 1491, 1770
BshFI GGCC 5 cut(s) 396, 456, 636, 1520, 1796
BshNI GGYRCC 1 cut(s) 1142
BsiHKAI GWGCWC 3 cut(s) 406, 666, 1244
BsiHKCI CYCGRG 3 cut(s) 1421, 1464, 1642
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 1647
BslI CCNNNNNNNGG 4 cut(s) 738, 1049, 1372, 1615
BsmAI GTCTC 4 cut(s) 229, 235, 1144, 1450
BsmFI GGGAC 1 cut(s) 1647
BsmI GAATGC 3 cut(s) 733, 941, 1337
BsnI GGCC 5 cut(s) 396, 456, 636, 1520, 1796
Bso31I GGTCTC 1 cut(s) 1144
BsoBI CYCGRG 3 cut(s) 1421, 1464, 1642
Bsp1286I GDGCHC 4 cut(s) 406, 590, 666, 1244
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 5 cut(s) 104, 310, 373, 852, 1223
Bsp1720I GCTNAGC 1 cut(s) 682
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 5 cut(s) 722, 869, 1517, 1599, 1670
BspANI GGCC 5 cut(s) 396, 456, 636, 1520, 1796
BspCNI CTCAG 4 cut(s) 93, 239, 643, 1007
BspLI GGNNCC 4 cut(s) 455, 1144, 1225, 1554
BspMI ACCTGC 1 cut(s) 1253
BspOI GCTAGC 1 cut(s) 1485
BspPI GGATC 3 cut(s) 305, 1218, 1231
BspQI GCTCTTC 2 cut(s) 200, 1107
BspT107I GGYRCC 1 cut(s) 1142
BspTNI GGTCTC 1 cut(s) 1144
BsrBI CCGCTC 1 cut(s) 1670
BsrDI GCAATG 6 cut(s) 264, 340, 1043, 1125, 1154, 1218
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 4 cut(s) 154, 198, 1313, 1514
BssECI CCNNGG 5 cut(s) 397, 708, 768, 1138, 1463
BssMI GATC 5 cut(s) 104, 310, 373, 852, 1223
BssT1I CCWWGG 2 cut(s) 397, 1138
Bst2UI CCWGG 4 cut(s) 709, 770, 1147, 1334
Bst4CI ACNGT 3 cut(s) 238, 480, 1060
Bst6I CTCTTC 3 cut(s) 200, 573, 1107
BstAPI GCANNNNNTGC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 1688
BstDEI CTNAG 6 cut(s) 101, 226, 630, 682, 956, 994
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 5 cut(s) 345, 704, 851, 864, 1006
BstHHI GCGC 2 cut(s) 212, 797
BstKTI GATC 5 cut(s) 107, 313, 376, 855, 1226
BstMAI GTCTC 4 cut(s) 229, 235, 1144, 1450
BstMBI GATC 5 cut(s) 104, 310, 373, 852, 1223
BstNI CCWGG 4 cut(s) 709, 770, 1147, 1334
BstNSI RCATGY 2 cut(s) 1100, 1517
BstSCI CCNGG 4 cut(s) 707, 768, 1145, 1332
BstSLI GKGCMC 2 cut(s) 406, 666
BstX2I RGATCY 2 cut(s) 104, 1223
BstYI RGATCY 2 cut(s) 104, 1223
BsuI GTATCC 1 cut(s) 1675
BsuRI GGCC 5 cut(s) 396, 456, 636, 1520, 1796
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 5 cut(s) 345, 704, 851, 864, 1006
BtsIMutI CAGTG 3 cut(s) 147, 1056, 1320
BveI ACCTGC 1 cut(s) 1253
CaiI CAGNNNCTG 2 cut(s) 769, 1121
CfoI GCGC 2 cut(s) 212, 797
Cfr13I GGNCC 6 cut(s) 454, 634, 1040, 1435, 1519, 1553
CseI GACGC 1 cut(s) 906
Csp6I GTAC 3 cut(s) 61, 380, 828
CviQI GTAC 3 cut(s) 61, 380, 828
DdeI CTNAG 6 cut(s) 101, 226, 630, 682, 956, 994
DpnI GATC 5 cut(s) 106, 312, 375, 854, 1225
DpnII GATC 5 cut(s) 104, 310, 373, 852, 1223
DraI TTTAAA 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 1433
Eam1104I CTCTTC 3 cut(s) 200, 573, 1107
Eam1105I GACNNNNNGTC 1 cut(s) 1433
EarI CTCTTC 3 cut(s) 200, 573, 1107
Ecl136II GAGCTC 1 cut(s) 1242
Eco130I CCWWGG 2 cut(s) 397, 1138
Eco24I GRGCYC 2 cut(s) 590, 1244
Eco31I GGTCTC 1 cut(s) 1144
Eco47I GGWCC 3 cut(s) 1040, 1435, 1553
Eco53kI GAGCTC 1 cut(s) 1242
Eco57I CTGAAG 3 cut(s) 1076, 1274, 1398
Eco88I CYCGRG 3 cut(s) 1421, 1464, 1642
EcoICRI GAGCTC 1 cut(s) 1242
EcoO109I RGGNCCY 2 cut(s) 454, 634
EcoRII CCWGG 4 cut(s) 707, 768, 1145, 1332
EcoT14I CCWWGG 2 cut(s) 397, 1138
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 2 cut(s) 590, 1244
ErhI CCWWGG 2 cut(s) 397, 1138
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FaqI GGGAC 1 cut(s) 1647
FauNDI CATATG 1 cut(s) 791
FokI GGATG 5 cut(s) 352, 691, 858, 871, 1013
FriOI GRGCYC 2 cut(s) 590, 1244
FspBI CTAG 4 cut(s) 47, 1245, 1391, 1482
GlaI GCGC 2 cut(s) 211, 796
GsaI CCCAGC 2 cut(s) 423, 453
GsuI CTGGAG 2 cut(s) 1168, 1316
HaeIII GGCC 5 cut(s) 396, 456, 636, 1520, 1796
HgaI GACGC 1 cut(s) 906
HhaI GCGC 2 cut(s) 212, 797
Hin6I GCGC 2 cut(s) 210, 795
HinP1I GCGC 2 cut(s) 210, 795
HindIII AAGCTT 2 cut(s) 367, 1410
HinfI GANTC 5 cut(s) 565, 1419, 1458, 1545, 1705
HphI GGTGA 4 cut(s) 209, 214, 970, 1684
Hpy166II GTNNAC 4 cut(s) 9, 404, 664, 1231
Hpy188I TCNGA 8 cut(s) 73, 972, 997, 1107, 1254, 1710, 1740, 1802
Hpy188III TCNNGA 5 cut(s) 155, 485, 856, 881, 1642
Hpy8I GTNNAC 4 cut(s) 9, 404, 664, 1231
HpyAV CCTTC 7 cut(s) 380, 671, 792, 827, 1372, 1373, 1448
HpyCH4III ACNGT 3 cut(s) 238, 480, 1060
HpyCH4IV ACGT 2 cut(s) 251, 1687
HpyF3I CTNAG 6 cut(s) 101, 226, 630, 682, 956, 994
HpySE526I ACGT 2 cut(s) 251, 1687
HspAI GCGC 2 cut(s) 210, 795
Kzo9I GATC 5 cut(s) 104, 310, 373, 852, 1223
LguI GCTCTTC 2 cut(s) 200, 1107
LmnI GCTCC 6 cut(s) 115, 741, 1217, 1352, 1571, 1644
LweI GCATC 6 cut(s) 520, 713, 790, 874, 991, 1127
MaeI CTAG 4 cut(s) 47, 1245, 1391, 1482
MaeII ACGT 2 cut(s) 251, 1687
MaeIII GTNAC 1 cut(s) 643
MalI GATC 5 cut(s) 106, 312, 375, 854, 1225
MbiI CCGCTC 1 cut(s) 1670
MboI GATC 5 cut(s) 104, 310, 373, 852, 1223
MboII GAAGA 5 cut(s) 217, 286, 560, 1082, 1094
MflI RGATCY 2 cut(s) 104, 1223
MhlI GDGCHC 4 cut(s) 406, 590, 666, 1244
MluCI AATT 6 cut(s) 169, 424, 747, 1539, 1587, 1780
MlyI GAGTC 3 cut(s) 559, 1413, 1452
MmeI TCCRAC 1 cut(s) 1659
MnlI CCTC 9 cut(s) 169, 193, 577, 865, 910, 991, 1340, 1473, 1786
Mph1103I ATGCAT 1 cut(s) 889
MseI TTAA 4 cut(s) 182, 891, 1175, 1538
MslI CAYNNNNRTG 2 cut(s) 120, 790
MspA1I CMGCKG 2 cut(s) 1475, 1532
MspR9I CCNGG 4 cut(s) 709, 770, 1147, 1334
Mva1269I GAATGC 3 cut(s) 733, 941, 1337
MvaI CCWGG 4 cut(s) 709, 770, 1147, 1334
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 1 cut(s) 791
NdeII GATC 5 cut(s) 104, 310, 373, 852, 1223
NheI GCTAGC 1 cut(s) 1481
NlaIV GGNNCC 4 cut(s) 455, 1144, 1225, 1554
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 2 cut(s) 1100, 1517
PaeI GCATGC 2 cut(s) 1100, 1517
PciSI GCTCTTC 2 cut(s) 200, 1107
PctI GAATGC 3 cut(s) 733, 941, 1337
PfeI GAWTC 2 cut(s) 1545, 1705
Pfl23II CGTACG 1 cut(s) 60
PflMI CCANNNNNTGG 3 cut(s) 738, 1372, 1615
PleI GAGTC 3 cut(s) 559, 1413, 1452
PpsI GAGTC 3 cut(s) 559, 1413, 1452
Ppu21I YACGTR 1 cut(s) 1688
Psp124BI GAGCTC 1 cut(s) 1244
Psp6I CCWGG 4 cut(s) 707, 768, 1145, 1332
PspFI CCCAGC 2 cut(s) 419, 449
PspGI CCWGG 4 cut(s) 707, 768, 1145, 1332
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 455, 1144, 1225, 1554
PspPI GGNCC 6 cut(s) 454, 634, 1040, 1435, 1519, 1553
PstNI CAGNNNCTG 2 cut(s) 769, 1121
PsuI RGATCY 2 cut(s) 104, 1223
PvuII CAGCTG 2 cut(s) 1475, 1532
RsaI GTAC 3 cut(s) 62, 381, 829
RsaNI GTAC 3 cut(s) 61, 380, 828
RseI CAYNNNNRTG 2 cut(s) 120, 790
SacI GAGCTC 1 cut(s) 1244
SapI GCTCTTC 2 cut(s) 200, 1107
SaqAI TTAA 4 cut(s) 182, 891, 1175, 1538
Sau3AI GATC 5 cut(s) 104, 310, 373, 852, 1223
Sau96I GGNCC 6 cut(s) 454, 634, 1040, 1435, 1519, 1553
SchI GAGTC 3 cut(s) 559, 1413, 1452
ScrFI CCNGG 4 cut(s) 709, 770, 1147, 1334
SduI GDGCHC 4 cut(s) 406, 590, 666, 1244
SfaNI GCATC 6 cut(s) 520, 713, 790, 874, 991, 1127
SinI GGWCC 3 cut(s) 1040, 1435, 1553
SmiMI CAYNNNNRTG 2 cut(s) 120, 790
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SphI GCATGC 2 cut(s) 1100, 1517
Sse9I AATT 6 cut(s) 169, 424, 747, 1539, 1587, 1780
SsiI CCGC 5 cut(s) 722, 869, 1517, 1599, 1670
SspMI CTAG 4 cut(s) 47, 1245, 1391, 1482
SstI GAGCTC 1 cut(s) 1244
StyD4I CCNGG 4 cut(s) 707, 768, 1145, 1332
StyI CCWWGG 2 cut(s) 397, 1138
TaaI ACNGT 3 cut(s) 238, 480, 1060
TaiI ACGT 2 cut(s) 254, 1690
TasI AATT 6 cut(s) 169, 424, 747, 1539, 1587, 1780
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 1520
TfiI GAWTC 2 cut(s) 1545, 1705
Tru1I TTAA 4 cut(s) 182, 891, 1175, 1538
Tru9I TTAA 4 cut(s) 182, 891, 1175, 1538
TscAI CASTG 3 cut(s) 154, 1063, 1320
TspDTI ATGAA 6 cut(s) 99, 560, 564, 774, 778, 934
TspGWI ACGGA 2 cut(s) 510, 1216
TspRI CASTG 3 cut(s) 154, 1063, 1320
Van91I CCANNNNNTGG 3 cut(s) 738, 1372, 1615
VneI GTGCAC 2 cut(s) 402, 662
VpaK11BI GGWCC 3 cut(s) 1040, 1435, 1553
XapI RAATTY 1 cut(s) 169
XceI RCATGY 2 cut(s) 1100, 1517
XspI CTAG 4 cut(s) 47, 1245, 1391, 1482
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.