Rroxscaffold_6G00419910

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011912
Physical Location & Seq
Forward (+)
41276584 .. 41280761
4178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419910.1

Sequence Viewer

Length: 1185 bp
ATGAAGTCTGCTTGTAGGAAAGCTGTGTTGTTTTCACTCCTCTGCGTGGTTCTATTTGGGCATGCTACAGCCGAGTCTGAAGAAGAGGTTTCACGGAAGTTGATATCTGCTCCGCACAAGAATGTGAGAACTAATGTTATTGATGGCACTGGTAATGAGAATACCTTAGGTTTTGAGGATATAAATAATGGGATCGGTGAGACAAAGGGCGGGAACAGCAAAGTCTCAATCTCCACTGTTGCATTATTTACGCTGGCGATGGCTGCCGCCACTGGTTTAGGTGCAGTGCCATTCTTCTTTGTGGAGCTTGATCCGCAATGGGCTGGACTCTGCAATGGAATGGCTGCTGGTGTGATGTTGGCTGCAAGCTTTGATCTTATACAGGAAGGGCAAGGTCATGGAGCAGGGAATTGGGTGGTCTTTGGGATTCTAGCTGGGGGAATTTTTATTTTGCTTTGCAAGAAGTTTCTCGAACAATATGGAGAGGTTAGTATGTTGGACATTAAGGGTGCAGATGCAACTAAAGTAGTTCTTGTGATTGGAATAATGACTCTTCATTCATTTGGGGAGGGCTCTGGTGTTGGGGTTTCCTTTGCTGGTTCCAAGGGTTTCTCTCAGGGCCTTTTGGTAACTTTGGCTATTGCTGTTCACAATATACCAGAAGGATTAGCCGTAAGTATGGTGCTTGCATCAAGGGGTGTTTCACCACAAAATGCCATGTTATGGAGTGTAATTACATCATTACCGCAGCCAATTGTAGCAGTTCCTTCATTCATGTGTGCTGATGCGTTTAGCAAGTTCCTTCCTTTCTGTACGGGATTTGCTGCTGGATGTATGATCTGGATGGTTGTTGCAGAGGTGCTTCCTGATGCATTTAAGGAAGCCTCTCCATCACATGTTGCATCTGCAGCTACGCTCTCTGTTGCATTCATGGAAGCACTTAGTACTCTTTTTCAGAGTTTCAGCCATGACTACAATTCAGAGGATGCTTCTGGCTTCTTTGTATCATTGCTTTTTGGTCTTGGGCCATTGCTTGGTGGCATGGTCCTTGTTGCATTTGCACTTGCTTTCCGTTTCCAGCATGCTCTTCTCATGGGTGCGGCATCTGGCATTGCCTTTGTCCTTGGTGCCTGGCGACCGTCGCAGCTACTTTTCTCCTCAAAAAATGGGATTTTTTCCTCTTAG

Protein Analysis

394

Amino Acids

41.13

Weight (kDa)

5.6

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 173 - 297 1.3e-12 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011912)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08650 AT3G08650
fragaria_vesca FvH4_6g09450 FvH4_6g09450
malus_domestica MD04G1177600.v1.1 MD12G1192900.v1.1
prunus_persica Prupe.6G297500_v2.0.a1
pyrus_communis pycom04g15660 pycom12g17960
rosa_chinensis RchiOBHm_Chr3g0459921
rosa_laevigata RLG00000025051
rosa_multiflora Rmu_sc0000240.1_g000047 Rmu_sc0016534.1_g000002
rosa_roxburghii Rroxscaffold_6G00419910
rosa_rugosa Rorug03G0038800
rosa_samantha Rh3AG097400 Rh3BG100300 Rh3CG102100 Rh3DG101800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1127
AccB7I CCANNNNNTGG 2 cut(s) 723, 1034
AciI CCGC 6 cut(s) 113, 210, 267, 314, 746, 1100
AclWI GGATC 2 cut(s) 200, 305
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 814, 946
AfiI CCNNNNNNNGG 3 cut(s) 46, 723, 1034
AflIII ACRYGT 1 cut(s) 895
AjnI CCWGG 1 cut(s) 1130
AluBI AGCT 6 cut(s) 23, 307, 369, 434, 911, 1147
AluI AGCT 6 cut(s) 23, 307, 369, 434, 911, 1147
Alw26I GTCTC 2 cut(s) 194, 229
AlwI GGATC 2 cut(s) 200, 305
AoxI GGCC 2 cut(s) 619, 1025
ApeKI GCWGC 7 cut(s) 263, 344, 362, 748, 824, 908, 1144
ApoI RAATTY 1 cut(s) 441
AspS9I GGNCC 3 cut(s) 619, 1025, 1045
AsuHPI GGTGA 2 cut(s) 209, 696
AvaII GGWCC 1 cut(s) 1045
AxyI CCTNAGG 1 cut(s) 166
BanI GGYRCC 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 575
BbvI GCAGC 7 cut(s) 250, 331, 349, 760, 811, 920, 1156
BccI CCATC 4 cut(s) 137, 253, 838, 898
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 1 cut(s) 1132
BcoDI GTCTC 2 cut(s) 194, 229
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 2 cut(s) 66, 906
BisI GCNGC 9 cut(s) 264, 267, 345, 363, 749, 825, 909, 1101, 1145
BlsI GCNGC 9 cut(s) 265, 268, 346, 364, 750, 826, 910, 1102, 1146
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 1 cut(s) 1132
Bme18I GGWCC 1 cut(s) 1045
BmgT120I GGNCC 3 cut(s) 619, 1025, 1045
BmiI GGNNCC 2 cut(s) 601, 1129
BmrFI CCNGG 1 cut(s) 1132
BmsI GCATC 7 cut(s) 505, 698, 775, 859, 911, 976, 1112
BsaJI CCNNGG 2 cut(s) 603, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 723, 1034
Bse1I ACTGG 2 cut(s) 154, 277
Bse21I CCTNAGG 1 cut(s) 166
Bse3DI GCAATG 5 cut(s) 323, 340, 1007, 1028, 1110
BseBI CCWGG 1 cut(s) 1132
BseDI CCNNGG 2 cut(s) 603, 1123
BseGI GGATG 3 cut(s) 836, 849, 991
BseLI CCNNNNNNNGG 3 cut(s) 46, 723, 1034
BseMI GCAATG 5 cut(s) 323, 340, 1007, 1028, 1110
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 154, 277
BseRI GAGGAG 2 cut(s) 29, 1147
BseXI GCAGC 7 cut(s) 250, 331, 349, 760, 811, 920, 1156
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 2 cut(s) 303, 531
Bsh1285I CGRYCG 1 cut(s) 1139
BshFI GGCC 2 cut(s) 621, 1027
BshNI GGYRCC 1 cut(s) 1127
BsiEI CGRYCG 1 cut(s) 1139
BslI CCNNNNNNNGG 3 cut(s) 46, 723, 1034
BsmAI GTCTC 2 cut(s) 194, 229
BsmI GAATGC 1 cut(s) 926
BsnI GGCC 2 cut(s) 621, 1027
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 4 cut(s) 192, 310, 373, 837
BspACI CCGC 6 cut(s) 113, 210, 267, 314, 746, 1100
BspANI GGCC 2 cut(s) 621, 1027
BspCNI CTCAG 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 601, 1129
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 2 cut(s) 200, 305
BspQI GCTCTTC 1 cut(s) 1092
BspT107I GGYRCC 1 cut(s) 1127
BsrDI GCAATG 5 cut(s) 323, 340, 1007, 1028, 1110
BsrI ACTGG 2 cut(s) 154, 277
BssECI CCNNGG 2 cut(s) 603, 1123
BssMI GATC 4 cut(s) 192, 310, 373, 837
BssT1I CCWWGG 2 cut(s) 603, 1123
Bst2UI CCWGG 1 cut(s) 1132
Bst4CI ACNGT 2 cut(s) 238, 1140
Bst6I CTCTTC 3 cut(s) 78, 558, 1092
BstC8I GCNNGC 5 cut(s) 63, 255, 367, 687, 1083
BstDEI CTNAG 4 cut(s) 166, 615, 941, 1182
BstF5I GGATG 3 cut(s) 836, 849, 991
BstKTI GATC 4 cut(s) 195, 313, 376, 840
BstMAI GTCTC 2 cut(s) 194, 229
BstMBI GATC 4 cut(s) 192, 310, 373, 837
BstMCI CGRYCG 1 cut(s) 1139
BstMWI GCNNNNNNNGC 5 cut(s) 216, 263, 313, 908, 1141
BstNI CCWGG 1 cut(s) 1132
BstNSI RCATGY 3 cut(s) 65, 899, 1085
BstSCI CCNGG 1 cut(s) 1130
BstSFI CTRYAG 2 cut(s) 66, 906
BstV1I GCAGC 7 cut(s) 250, 331, 349, 760, 811, 920, 1156
Bsu36I CCTNAGG 1 cut(s) 166
BsuRI GGCC 2 cut(s) 621, 1027
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 3 cut(s) 836, 849, 991
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 147, 234, 270, 291
Cac8I GCNNGC 5 cut(s) 63, 255, 367, 687, 1083
Cfr13I GGNCC 3 cut(s) 619, 1025, 1045
Csp6I GTAC 2 cut(s) 813, 945
CviQI GTAC 2 cut(s) 813, 945
DdeI CTNAG 4 cut(s) 166, 615, 941, 1182
DpnI GATC 4 cut(s) 194, 312, 375, 839
DpnII GATC 4 cut(s) 192, 310, 373, 837
Eam1104I CTCTTC 3 cut(s) 78, 558, 1092
EarI CTCTTC 3 cut(s) 78, 558, 1092
Eco130I CCWWGG 2 cut(s) 603, 1123
Eco24I GRGCYC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 1045
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 1130
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 603, 1123
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 2 cut(s) 603, 1123
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 9 cut(s) 264, 267, 345, 363, 749, 825, 909, 1101, 1145
FokI GGATG 3 cut(s) 843, 856, 998
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 9 cut(s) 264, 267, 345, 363, 749, 825, 909, 1101, 1145
FspBI CTAG 1 cut(s) 431
GluI GCNGC 9 cut(s) 264, 267, 345, 363, 749, 825, 909, 1101, 1145
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 621, 1027
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 4 cut(s) 74, 327, 427, 550
HphI GGTGA 2 cut(s) 209, 696
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 3 cut(s) 79, 957, 982
Hpy188III TCNNGA 3 cut(s) 470, 841, 866
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 1144
HpyAV CCTTC 4 cut(s) 380, 656, 777, 812
HpyCH4III ACNGT 2 cut(s) 238, 1140
HpyF10VI GCNNNNNNNGC 5 cut(s) 216, 263, 313, 908, 1141
HpyF3I CTNAG 4 cut(s) 166, 615, 941, 1182
Kzo9I GATC 4 cut(s) 192, 310, 373, 837
LguI GCTCTTC 1 cut(s) 1092
LmnI GCTCC 3 cut(s) 115, 304, 401
Lsp1109I GCAGC 7 cut(s) 250, 331, 349, 760, 811, 920, 1156
LweI GCATC 7 cut(s) 505, 698, 775, 859, 911, 976, 1112
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 628
MalI GATC 4 cut(s) 194, 312, 375, 839
MboI GATC 4 cut(s) 192, 310, 373, 837
MboII GAAGA 5 cut(s) 92, 95, 286, 545, 1079
MfeI CAATTG 1 cut(s) 753
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 5 cut(s) 409, 441, 732, 753, 976
MlyI GAGTC 3 cut(s) 83, 321, 544
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 9 cut(s) 50, 79, 169, 478, 562, 850, 895, 976, 1168
Mph1103I ATGCAT 1 cut(s) 874
MseI TTAA 2 cut(s) 504, 876
MslI CAYNNNNRTG 2 cut(s) 120, 775
MspR9I CCNGG 1 cut(s) 1132
MunI CAATTG 1 cut(s) 753
Mva1269I GAATGC 1 cut(s) 926
MvaI CCWGG 1 cut(s) 1132
MwoI GCNNNNNNNGC 5 cut(s) 216, 263, 313, 908, 1141
NdeII GATC 4 cut(s) 192, 310, 373, 837
NlaIV GGNNCC 2 cut(s) 601, 1129
NmeAIII GCCGAG 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 3 cut(s) 65, 899, 1085
PaeI GCATGC 2 cut(s) 65, 1085
PciI ACATGT 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 1092
PctI GAATGC 1 cut(s) 926
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 2 cut(s) 723, 1034
PkrI GCNGC 9 cut(s) 265, 268, 346, 364, 750, 826, 910, 1102, 1146
PleI GAGTC 3 cut(s) 82, 321, 544
PpsI GAGTC 3 cut(s) 82, 321, 544
PscI ACATGT 1 cut(s) 895
Psp6I CCWGG 1 cut(s) 1130
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 1130
PspN4I GGNNCC 2 cut(s) 601, 1129
PspPI GGNCC 3 cut(s) 619, 1025, 1045
PstI CTGCAG 1 cut(s) 910
RsaI GTAC 2 cut(s) 814, 946
RsaNI GTAC 2 cut(s) 813, 945
RseI CAYNNNNRTG 2 cut(s) 120, 775
SapI GCTCTTC 1 cut(s) 1092
SaqAI TTAA 2 cut(s) 504, 876
SatI GCNGC 9 cut(s) 264, 267, 345, 363, 749, 825, 909, 1101, 1145
Sau3AI GATC 4 cut(s) 192, 310, 373, 837
Sau96I GGNCC 3 cut(s) 619, 1025, 1045
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 3 cut(s) 83, 321, 544
ScrFI CCNGG 1 cut(s) 1132
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 7 cut(s) 505, 698, 775, 859, 911, 976, 1112
SfcI CTRYAG 2 cut(s) 66, 906
SinI GGWCC 1 cut(s) 1045
SmiMI CAYNNNNRTG 2 cut(s) 120, 775
SphI GCATGC 2 cut(s) 65, 1085
Sse9I AATT 5 cut(s) 409, 441, 732, 753, 976
SsiI CCGC 6 cut(s) 113, 210, 267, 314, 746, 1100
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 1130
StyI CCWWGG 2 cut(s) 603, 1123
TaaI ACNGT 2 cut(s) 238, 1140
TaqI TCGA 1 cut(s) 471
TasI AATT 5 cut(s) 409, 441, 732, 753, 976
TatI WGTACW 1 cut(s) 944
TauI GCSGC 2 cut(s) 269, 1103
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 504, 876
Tru9I TTAA 2 cut(s) 504, 876
TscAI CASTG 4 cut(s) 154, 241, 277, 291
TseI GCWGC 7 cut(s) 263, 344, 362, 748, 824, 908, 1144
TspDTI ATGAA 6 cut(s) 17, 545, 549, 759, 763, 919
TspGWI ACGGA 2 cut(s) 109, 1061
TspRI CASTG 4 cut(s) 154, 241, 277, 291
Van91I CCANNNNNTGG 2 cut(s) 723, 1034
VpaK11BI GGWCC 1 cut(s) 1045
XapI RAATTY 1 cut(s) 441
XceI RCATGY 3 cut(s) 65, 899, 1085
XspI CTAG 1 cut(s) 431
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.