Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017122

Physical Location & Seq

Genomic Coordinates Reverse (-)

5734276 .. 5736927

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGAAGTGTTTCTTTTTCTATATTTGGTTCGCTTCAACGATCCATTCCGTATTTTCCGCAAATTACATCCCATCTGATAAAATCTTCCTAAACTGCGGCGGTCCGCAAGAGTCCACCGACGCCGATGGCCAGAAATGGACATCGGACGTCGGCTCCAAGTTCGCCTCCGGCGCAAACTCCACCACTTCCCCTGCCGCCACTCAAGACCCTTCAGTCCCTGAAACCCCTTTCATGACTGCCAGGGTCTTTCATTCTGATTACACCTACAAGTTCCCGGTCGCCTCCGGCCGGATTTTTGTTCGTCTTTCCTTTTATCCGGCTTCCTACGCCGGGCTCAATGCCTCCGGTGCCGTGTTTTCGGTAATGGTTGAGTCTTATACTGTTTTGAAAAATTTCAGTGTTGTTCAGACCACTGAGGCTCTGGATTATGCTTTTGTTACAAAGGAGTTTGTGGTCAATGTTGAAGGGGAGTCTTTAGATGTCACGTTTAAGCCCTCTAGTAGTGTTCCGAATGCTTATGCATTTGTGAATGGGATTGAGGTTGTGTCCATGCCGGATATATATAGCTCTACTGATGGTACCACAATGATTGTGGGGCAATCAAGTCCTTTCTATATTGATAATAGTACAGCGCTGGAGAATGTGTATCGATTGAATGTGGGTGGAAATGATATATCGCCCAGTAAGGATACTGGTCTGCTTAGGTCTTGGTATGATGACACTGCCTATCTGTTTGGGGCAGCATTTGGTGTTCCGGAATTTGCTGATGGCAACATGTCGATTGCTTACCCCAAGGACATGCCTACTTATGTTGCTCCAGAGGATGTGTATAAGACAGCCAGGTCTATGGGGCCGAATAACAACATCAACCTCAACTACAATTTGACTTGGGTGTTCTCAATTGATTCTGGATTCATGTACCTTGTGAGGCTGCATTTCTGTGAGGTTGCTGCAAACATAACCAAGTTGAACCAGAGAGTGTTTGATATCTATCTCAATAATCAAACTGCCGAGTCGGGGTTTGATGTTGCTGGAATCACACAAGGGAATGGAATTCCGCTGTACAAGGATTATGTGGTAATGGTTCCAAATGGGAGCCCCCAGGAGGATCTTTGGCTCGCACTGCATCCAAATCCTAGTACTAAGCCACAGTGGTACGATGCCATCCTTAATGGAGTCGAGATCTTCAAGATCAATGATACTACTGGCAATCTTGGAGGGCCTAATCCTATTCCCCGTCCCAAGCAGTTGAACATTGATCCATCTAAGGCTAGATCTGGATCAGGTCGTGGCAAGGGTAAGAGCAGTAATCAGAAAGCTATTATTGCCGGGGGAGTTAGTGCTGGAGTTGTCTTGGCACTGGTCCTTGGTTTCTTTGCTATGTGTGTGTCACGCCGCCGTAGACAACCGAAGGACTCAAGTACAAGTGAAGGACCATCTGGTTGGCTCCCTCTGTCTTTGTATTCACAATCTGCAAGTTCTGCCAAGACAAACACAACAAGAAGTTGCGCTTCCTCCCTCCCCTCAAACCTCTGTCGTCACTTCTCATTTGCTGAGATCAAAGCTGCCACTAACAACTTTGAAGAGGCTCGACTCCTTGGGGTGGGAGGTTTTGGAAAAGTATACAAGGGTGACATTGATGGTGGAGCAACCAAAGTAGCCATTAAGCGTGGAAACCCTCTCTCTGATCAAGGTGTGCATGAATTTCAGACTGAGATTGAAATGCTCTCAAAGCTTCGTCATCGTCATCTTGTTTCACTGATTGGTTATTGTGAGGATAACTCTGAGATGATTCTTGTATATGATTACATGGCTTTTGGAACCCTGCGGGAGCATTTGTACAAGACCCAAAAGCCTCCTCTACCATGGAAGCAAAGGCTTGAGATTTGCATTGGGGCTGCTCGTGGTTTACATTATCTCCATACTGGTGCCAAGCACACAATCATTCATAGAGATGTTAAGACAACTAACATTCTGTTAGATGAGAAGTGGGTTGCTAAGGTCTCAGATTTTGGCTTGTCAAAAACAGGTCCTACATTGGATAACACTCATGTCAGCACTGTTGTCAAAGGTAGTTTTGGGTATTTGGATCCAGAGTACTTTAGACGGCAACAGCTGACCGACAAGTCTGATGTGTATTCGTTTGGAGTTGTCCTTTTTGAGATCTTATGTGCTCGCCCAGCCTTGAACCCCACGCTTCCAAAGGAGCAAGTGAGCTTAGCAGAGTGGGCTGCACATTGCCACAAGAAAGGCATGCTTGATCAGATCCTCGACCCTTACCTCAAGGGGAAGATCACGCCTGAATGTTTCAGGAAGTTTGCAGAGACAGCAATGAAGTGTGTGTCGGACCAGAGCATTGACAGGCCGTCTATGGGAGATGTTCTCTGGAACCTTGAGTTTGCATTGCAGCTACAGGAGAGTGCTGAAGAGAGTGGCAAGGGTATTGGAATGGACATTGAGGAAGAGCCTTTCATGGCCTGTAAAGGGAAGAAGGACCTGGATGCATCACCAGGGTTTGATGGCAATGGGACAGACTCGAGGAGCAGCGGCATCAGCATGAGCATGGGTGGCCGCAGCCTGGCTAGTGACGATTCTGATGGACTGACACCGAGTGCTGTGTTCTCACAAATCATGAACCCAAAGGGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

884

Amino Acids

96.72

Weight (kDa)

6.03

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	29 - 164	1.2e-09	Malectin domain
Malectin_like	PF12819	30 - 398	8.4e-34	Malectin-like domain
Malectin	PF11721	264 - 363	6.4e-10	Malectin domain
Pkinase	PF00069	527 - 791	5.8e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	531 - 795	1.4e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51550
fragaria_vesca	FvH4_6g09590
malus_domestica	MD04G1176400.v1.1 MD12G1190700.v1.1
prunus_persica	Prupe.6G295900_v2.0.a1
pyrus_communis	pycom04g15560 pycom12g17790
rosa_chinensis	RchiOBHm_Chr3g0460181
rosa_laevigata	RLG00000025037
rosa_multiflora	Rmu_sc0003763.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419760
rosa_rugosa	Rorug03G0040600
rosa_wichuraiana	Rw3G008320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	212, 841, 2125
AatII	GACGTC	1 cut(s)	150
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	3 cut(s)	347, 578, 1928
AccI	GTMKAC	2 cut(s)	1402, 1623
AccIII	TCCGGA	1 cut(s)	754
AclWI	GGATC	7 cut(s)	34, 1116, 1253, 1288, 2084, 2097, 2260
AcoI	YGGCCR	3 cut(s)	127, 286, 2569
AcsI	RAATTY	4 cut(s)	391, 758, 1053, 1703
AcuI	CTGAAG	2 cut(s)	195, 2445
AcyI	GRCGYC	2 cut(s)	120, 147
AdeI	CACNNNGTG	1 cut(s)	2612
AfaI	GTAC	9 cut(s)	580, 628, 920, 1064, 1141, 1157, 1423, 1841, 2099
AfeI	AGCGCT	1 cut(s)	633
AfiI	CCNNNNNNNGG	8 cut(s)	288, 330, 1017, 1105, 1603, 2372, 2484, 2578
AflIII	ACRYGT	1 cut(s)	774
AhdI	GACNNNNNGTC	1 cut(s)	2365
AjnI	CCWGG	6 cut(s)	239, 839, 1101, 2496, 2509, 2577
AluBI	AGCT	7 cut(s)	567, 1319, 1565, 1735, 2116, 2217, 2410
AluI	AGCT	7 cut(s)	567, 1319, 1565, 1735, 2116, 2217, 2410
Alw21I	GWGCWC	1 cut(s)	2176
Alw26I	GTCTC	2 cut(s)	2008, 2318
AlwI	GGATC	7 cut(s)	34, 1116, 1253, 1288, 2084, 2097, 2260
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	2536
Aor13HI	TCCGGA	1 cut(s)	754
Aor51HI	AGCGCT	1 cut(s)	633
AoxI	GGCC	7 cut(s)	127, 286, 851, 1220, 2363, 2475, 2569
ApeKI	GCWGC	9 cut(s)	740, 931, 950, 1565, 1898, 2231, 2407, 2544, 2574
ApoI	RAATTY	4 cut(s)	391, 758, 1053, 1703
Asp700I	GAANNNNTTC	2 cut(s)	8, 392
Asp718I	GGTACC	1 cut(s)	578
AspLEI	GCGC	3 cut(s)	173, 634, 1511
AspS9I	GGNCC	8 cut(s)	101, 851, 1220, 1363, 1433, 2030, 2347, 2494
AsuC2I	CCSGG	3 cut(s)	275, 331, 1330
AsuHPI	GGTGA	2 cut(s)	1643, 2499
AvaI	CYCGRG	1 cut(s)	2536
AvaII	GGWCC	6 cut(s)	101, 1363, 1433, 2030, 2347, 2494
BalI	TGGCCA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	2089
BanI	GGYRCC	3 cut(s)	347, 578, 1928
BanII	GRGCYC	2 cut(s)	336, 1100
BauI	CACGAG	1 cut(s)	1902
Bbv12I	GWGCWC	1 cut(s)	2176
BbvI	GCAGC	9 cut(s)	752, 918, 937, 1552, 1885, 2218, 2419, 2556, 2586
BceAI	ACGGC	4 cut(s)	335, 1383, 2123, 2350
BciT130I	CCWGG	6 cut(s)	241, 841, 1103, 2498, 2511, 2579
BciVI	GTATCC	1 cut(s)	682
BclI	TGATCA	2 cut(s)	1687, 2260
BcnI	CCSGG	3 cut(s)	275, 331, 1330
BcoDI	GTCTC	2 cut(s)	2008, 2318
BfaI	CTAG	4 cut(s)	498, 1137, 1272, 2583
BfmI	CTRYAG	1 cut(s)	2411
BfoI	RGCGCY	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	682
BglII	AGATCT	3 cut(s)	1182, 1274, 2163
BlpI	GCTNAGC	1 cut(s)	2218
BmcAI	AGTACT	2 cut(s)	1141, 2099
Bme1390I	CCNGG	9 cut(s)	241, 275, 331, 841, 1103, 1330, 2498, 2511, 2579
Bme18I	GGWCC	6 cut(s)	101, 1363, 1433, 2030, 2347, 2494
BmeRI	GACNNNNNGTC	1 cut(s)	2365
BmeT110I	CYCGRG	1 cut(s)	2536
BmgT120I	GGNCC	8 cut(s)	101, 851, 1220, 1363, 1433, 2030, 2347, 2494
BmrFI	CCNGG	9 cut(s)	241, 275, 331, 841, 1103, 1330, 2498, 2511, 2579
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	5 cut(s)	1135, 1150, 2491, 2513, 2559
BmuI	ACTGGG	1 cut(s)	675
BplI	GAGNNNNNCTC	4 cut(s)	1766, 1798, 2367, 2399
BpmI	CTGGAG	3 cut(s)	656, 801, 1365
Bpu10I	CCTNAGC	2 cut(s)	701, 1998
Bpu1102I	GCTNAGC	1 cut(s)	2218
BpuEI	CTTGAG	5 cut(s)	186, 1402, 1901, 2267, 2414
BpuMI	CCSGG	3 cut(s)	275, 331, 1330
Bsa29I	ATCGAT	1 cut(s)	649
BsaBI	GATNNNNATC	2 cut(s)	990, 1279
BsaHI	GRCGYC	2 cut(s)	120, 147
BsaI	GGTCTC	1 cut(s)	2008
BsaJI	CCNNGG	8 cut(s)	240, 792, 1101, 1329, 1366, 1597, 1865, 2510
BsaWI	WCCGGW	2 cut(s)	344, 754
BsaXI	ACNNNNNCTCC	8 cut(s)	137, 167, 629, 659, 1823, 1853, 1902, 1932
Bsc4I	CCNNNNNNNGG	8 cut(s)	288, 330, 1017, 1105, 1603, 2372, 2484, 2578
Bse1I	ACTGG	5 cut(s)	681, 697, 1210, 1365, 1930
Bse3DI	GCAATG	4 cut(s)	2236, 2337, 2402, 2530
Bse8I	GATNNNNATC	2 cut(s)	990, 1279
BseAI	TCCGGA	1 cut(s)	754
BseBI	CCWGG	6 cut(s)	241, 841, 1103, 2498, 2511, 2579
BseCI	ATCGAT	1 cut(s)	649
BseDI	CCNNGG	8 cut(s)	240, 792, 1101, 1329, 1366, 1597, 1865, 2510
BseGI	GGATG	5 cut(s)	66, 829, 1126, 1164, 2506
BseJI	GATNNNNATC	2 cut(s)	990, 1279
BseLI	CCNNNNNNNGG	8 cut(s)	288, 330, 1017, 1105, 1603, 2372, 2484, 2578
BseMI	GCAATG	4 cut(s)	2236, 2337, 2402, 2530
BseMII	CTCAG	5 cut(s)	405, 1545, 1704, 1776, 2019
BseNI	ACTGG	5 cut(s)	681, 697, 1210, 1365, 1930
BseRI	GAGGAG	2 cut(s)	1848, 2554
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	9 cut(s)	752, 918, 937, 1552, 1885, 2218, 2419, 2556, 2586
BseYI	CCCAGC	1 cut(s)	2179
BsgI	GTGCAG	1 cut(s)	2217
Bsh1285I	CGRYCG	2 cut(s)	279, 289
BshFI	GGCC	7 cut(s)	129, 288, 853, 1222, 2365, 2477, 2571
BshNI	GGYRCC	3 cut(s)	347, 578, 1928
BshVI	ATCGAT	1 cut(s)	649
BsiEI	CGRYCG	2 cut(s)	279, 289
BsiHKAI	GWGCWC	1 cut(s)	2176
BsiHKCI	CYCGRG	1 cut(s)	2536
BslFI	GGGAC	3 cut(s)	200, 1224, 2542
BslI	CCNNNNNNNGG	8 cut(s)	288, 330, 1017, 1105, 1603, 2372, 2484, 2578
BsmAI	GTCTC	2 cut(s)	2008, 2318
BsmFI	GGGAC	3 cut(s)	200, 1224, 2542
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	7 cut(s)	129, 288, 853, 1222, 2365, 2477, 2571
Bso31I	GGTCTC	1 cut(s)	2008
BsoBI	CYCGRG	1 cut(s)	2536
Bsp1286I	GDGCHC	3 cut(s)	336, 1100, 2176
Bsp13I	TCCGGA	1 cut(s)	754
Bsp1407I	TGTACA	2 cut(s)	1062, 1839
Bsp1720I	GCTNAGC	1 cut(s)	2218
Bsp19I	CCATGG	1 cut(s)	1865
BspANI	GGCC	7 cut(s)	129, 288, 853, 1222, 2365, 2477, 2571
BspCNI	CTCAG	5 cut(s)	406, 1546, 1705, 1777, 2018
BspDI	ATCGAT	1 cut(s)	649
BspEI	TCCGGA	1 cut(s)	754
BspHI	TCATGA	2 cut(s)	231, 2631
BspPI	GGATC	7 cut(s)	34, 1116, 1253, 1288, 2084, 2097, 2260
BspQI	GCTCTTC	1 cut(s)	2457
BspT107I	GGYRCC	3 cut(s)	347, 578, 1928
BspTNI	GGTCTC	1 cut(s)	2008
BsrDI	GCAATG	4 cut(s)	2236, 2337, 2402, 2530
BsrGI	TGTACA	2 cut(s)	1062, 1839
BsrI	ACTGG	5 cut(s)	681, 697, 1210, 1365, 1930
BssECI	CCNNGG	8 cut(s)	240, 792, 1101, 1329, 1366, 1597, 1865, 2510
BssNAI	GTATAC	1 cut(s)	1624
BssNI	GRCGYC	2 cut(s)	120, 147
BssSI	CACGAG	1 cut(s)	1902
BssT1I	CCWWGG	4 cut(s)	792, 1366, 1597, 1865
Bst1107I	GTATAC	1 cut(s)	1624
Bst2BI	CACGAG	1 cut(s)	1902
Bst2UI	CCWGG	6 cut(s)	241, 841, 1103, 2498, 2511, 2579
Bst4CI	ACNGT	3 cut(s)	382, 1152, 2062
Bst6I	CTCTTC	3 cut(s)	1578, 2421, 2457
BstACI	GRCGYC	2 cut(s)	120, 147
BstAPI	GCANNNNNTGC	1 cut(s)	1481
BstAUI	TGTACA	2 cut(s)	1062, 1839
BstC8I	GCNNGC	3 cut(s)	1119, 2176, 2255
BstDSI	CCRYGG	1 cut(s)	1865
BstF5I	GGATG	5 cut(s)	66, 829, 1126, 1164, 2506
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	3 cut(s)	173, 634, 1511
BstMAI	GTCTC	2 cut(s)	2008, 2318
BstMCI	CGRYCG	2 cut(s)	279, 289
BstNI	CCWGG	6 cut(s)	241, 841, 1103, 2498, 2511, 2579
BstNSI	RCATGY	3 cut(s)	778, 802, 2257
BstSCI	CCNGG	9 cut(s)	239, 273, 329, 839, 1101, 1328, 2496, 2509, 2577
BstSFI	CTRYAG	1 cut(s)	2411
BstV1I	GCAGC	9 cut(s)	752, 918, 937, 1552, 1885, 2218, 2419, 2556, 2586
BstX2I	RGATCY	6 cut(s)	1108, 1182, 1274, 2089, 2163, 2265
BstXI	CCANNNNNNTGG	2 cut(s)	847, 1443
BstYI	RGATCY	6 cut(s)	1108, 1182, 1274, 2089, 2163, 2265
BstZ17I	GTATAC	1 cut(s)	1624
BstZI	CGGCCG	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	7 cut(s)	129, 288, 853, 1222, 2365, 2477, 2571
BsuTUI	ATCGAT	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	1865
BtsCI	GGATG	5 cut(s)	66, 829, 1126, 1164, 2506
BtsI	GCAGTG	2 cut(s)	720, 1121
BtsIMutI	CAGTG	8 cut(s)	403, 411, 720, 1121, 1157, 1358, 1757, 2058
Cac8I	GCNNGC	3 cut(s)	1119, 2176, 2255
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	2 cut(s)	231, 2631
CfoI	GCGC	3 cut(s)	173, 634, 1511
Cfr13I	GGNCC	8 cut(s)	101, 851, 1220, 1363, 1433, 2030, 2347, 2494
ClaI	ATCGAT	1 cut(s)	649
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	9 cut(s)	579, 627, 919, 1063, 1140, 1156, 1422, 1840, 2098
CspCI	CAANNNNNGTGG	4 cut(s)	571, 573, 606, 608
CspI	CGGWCCG	1 cut(s)	101
CviQI	GTAC	9 cut(s)	579, 627, 919, 1063, 1140, 1156, 1422, 1840, 2098
DraIII	CACNNNGTG	1 cut(s)	2612
DrdI	GACNNNNNNGTC	3 cut(s)	212, 841, 2125
DriI	GACNNNNNGTC	1 cut(s)	2365
DseDI	GACNNNNNNGTC	3 cut(s)	212, 841, 2125
EaeI	YGGCCR	3 cut(s)	127, 286, 2569
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	1578, 2421, 2457
Eam1105I	GACNNNNNGTC	1 cut(s)	2365
EarI	CTCTTC	3 cut(s)	1578, 2421, 2457
EclXI	CGGCCG	1 cut(s)	286
Eco130I	CCWWGG	4 cut(s)	792, 1366, 1597, 1865
Eco24I	GRGCYC	2 cut(s)	336, 1100
Eco31I	GGTCTC	1 cut(s)	2008
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	6 cut(s)	101, 1363, 1433, 2030, 2347, 2494
Eco47III	AGCGCT	1 cut(s)	633
Eco52I	CGGCCG	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	195, 2445
Eco88I	CYCGRG	1 cut(s)	2536
EcoO109I	RGGNCCY	3 cut(s)	1220, 2030, 2494
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	6 cut(s)	239, 839, 1101, 2496, 2509, 2577
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	4 cut(s)	792, 1366, 1597, 1865
EcoT22I	ATGCAT	2 cut(s)	523, 2506
EcoT38I	GRGCYC	2 cut(s)	336, 1100
ErhI	CCWWGG	4 cut(s)	792, 1366, 1597, 1865
FalI	AAGNNNNNCTT	5 cut(s)	28, 1495, 1527, 2241, 2273
FaqI	GGGAC	3 cut(s)	200, 1224, 2542
FauI	CCCGC	1 cut(s)	1821
FbaI	TGATCA	2 cut(s)	1687, 2260
FblI	GTMKAC	2 cut(s)	1402, 1623
FokI	GGATG	5 cut(s)	53, 836, 1113, 1151, 2513
FriOI	GRGCYC	2 cut(s)	336, 1100
FspBI	CTAG	4 cut(s)	498, 1137, 1272, 2583
GlaI	GCGC	3 cut(s)	172, 633, 1510
GsaI	CCCAGC	1 cut(s)	2183
GsuI	CTGGAG	3 cut(s)	656, 801, 1365
HaeII	RGCGCY	1 cut(s)	635
HaeIII	GGCC	7 cut(s)	129, 288, 853, 1222, 2365, 2477, 2571
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	3 cut(s)	173, 634, 1511
Hin1I	GRCGYC	2 cut(s)	120, 147
Hin6I	GCGC	3 cut(s)	171, 632, 1509
HinP1I	GCGC	3 cut(s)	171, 632, 1509
HindIII	AAGCTT	1 cut(s)	1733
HphI	GGTGA	2 cut(s)	1643, 2499
Hpy166II	GTNNAC	4 cut(s)	114, 1403, 1624, 1910
Hpy8I	GTNNAC	4 cut(s)	114, 1403, 1624, 1910
Hpy99I	CGWCG	2 cut(s)	122, 152
HpyAV	CCTTC	5 cut(s)	219, 458, 1405, 1424, 2485
HpyCH4III	ACNGT	3 cut(s)	382, 1152, 2062
HpyCH4IV	ACGT	3 cut(s)	147, 485, 2647
HpySE526I	ACGT	3 cut(s)	147, 485, 2647
Hsp92I	GRCGYC	2 cut(s)	120, 147
HspAI	GCGC	3 cut(s)	171, 632, 1509
Kpn2I	TCCGGA	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	582
Ksp22I	TGATCA	2 cut(s)	1687, 2260
LguI	GCTCTTC	1 cut(s)	2457
LmnI	GCTCC	8 cut(s)	158, 820, 1095, 1452, 1646, 1831, 2206, 2541
Lsp1109I	GCAGC	9 cut(s)	752, 918, 937, 1552, 1885, 2218, 2419, 2556, 2586
LweI	GCATC	5 cut(s)	1135, 1150, 2491, 2513, 2559
MaeI	CTAG	4 cut(s)	498, 1137, 1272, 2583
MaeII	ACGT	3 cut(s)	147, 485, 2647
MaeIII	GTNAC	6 cut(s)	436, 481, 1389, 1538, 1631, 2585
MboII	GAAGA	7 cut(s)	76, 1177, 1595, 2302, 2438, 2474, 2500
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	6 cut(s)	1108, 1182, 1274, 2089, 2163, 2265
MhlI	GDGCHC	3 cut(s)	336, 1100, 2176
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	7 cut(s)	61, 391, 758, 880, 900, 1053, 1703
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	8 cut(s)	119, 380, 479, 1022, 1185, 1409, 1587, 2528
MmeI	TCCRAC	1 cut(s)	2325
Mox20I	TGGCCA	1 cut(s)	129
Mph1103I	ATGCAT	2 cut(s)	523, 2506
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	2 cut(s)	8, 392
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	4 cut(s)	489, 1170, 1665, 1959
MslI	CAYNNNNRTG	5 cut(s)	939, 1926, 1953, 2555, 2561
Msp20I	TGGCCA	1 cut(s)	129
MspA1I	CMGCKG	3 cut(s)	1060, 2116, 2547
MspR9I	CCNGG	9 cut(s)	241, 275, 331, 841, 1103, 1330, 2498, 2511, 2579
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	6 cut(s)	241, 841, 1103, 2498, 2511, 2579
NciI	CCSGG	3 cut(s)	275, 331, 1330
NcoI	CCATGG	1 cut(s)	1865
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	5 cut(s)	481, 1389, 1538, 1631, 2585
NsiI	ATGCAT	2 cut(s)	523, 2506
NspI	RCATGY	3 cut(s)	778, 802, 2257
PaeI	GCATGC	1 cut(s)	2257
PaeR7I	CTCGAG	1 cut(s)	2536
PagI	TCATGA	2 cut(s)	231, 2631
PciI	ACATGT	1 cut(s)	774
PciSI	GCTCTTC	1 cut(s)	2457
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	2 cut(s)	8, 392
PfeI	GAWTC	5 cut(s)	905, 912, 1035, 1792, 2591
PleI	GAGTC	8 cut(s)	118, 379, 478, 1021, 1184, 1409, 1587, 2528
PpsI	GAGTC	8 cut(s)	118, 379, 478, 1021, 1184, 1409, 1587, 2528
PpuMI	RGGWCCY	2 cut(s)	2030, 2494
PscI	ACATGT	1 cut(s)	774
Psp5II	RGGWCCY	2 cut(s)	2030, 2494
Psp6I	CCWGG	6 cut(s)	239, 839, 1101, 2496, 2509, 2577
PspFI	CCCAGC	1 cut(s)	2179
PspGI	CCWGG	6 cut(s)	239, 839, 1101, 2496, 2509, 2577
PspPI	GGNCC	8 cut(s)	101, 851, 1220, 1363, 1433, 2030, 2347, 2494
PspPPI	RGGWCCY	2 cut(s)	2030, 2494
PspXI	VCTCGAGB	1 cut(s)	2536
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	6 cut(s)	1108, 1182, 1274, 2089, 2163, 2265
PvuII	CAGCTG	1 cut(s)	2116
RsaI	GTAC	9 cut(s)	580, 628, 920, 1064, 1141, 1157, 1423, 1841, 2099
RsaNI	GTAC	9 cut(s)	579, 627, 919, 1063, 1140, 1156, 1422, 1840, 2098
RseI	CAYNNNNRTG	5 cut(s)	939, 1926, 1953, 2555, 2561
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	2457
SaqAI	TTAA	4 cut(s)	489, 1170, 1665, 1959
Sau96I	GGNCC	8 cut(s)	101, 851, 1220, 1363, 1433, 2030, 2347, 2494
ScaI	AGTACT	2 cut(s)	1141, 2099
SchI	GAGTC	8 cut(s)	119, 380, 479, 1022, 1185, 1409, 1587, 2528
ScrFI	CCNGG	9 cut(s)	241, 275, 331, 841, 1103, 1330, 2498, 2511, 2579
SduI	GDGCHC	3 cut(s)	336, 1100, 2176
SfaNI	GCATC	5 cut(s)	1135, 1150, 2491, 2513, 2559
SfcI	CTRYAG	1 cut(s)	2411
Sfr274I	CTCGAG	1 cut(s)	2536
SinI	GGWCC	6 cut(s)	101, 1363, 1433, 2030, 2347, 2494
SlaI	CTCGAG	1 cut(s)	2536
SmiMI	CAYNNNNRTG	5 cut(s)	939, 1926, 1953, 2555, 2561
SmlI	CTYRAG	6 cut(s)	201, 1417, 1880, 2282, 2393, 2536
SmoI	CTYRAG	6 cut(s)	201, 1417, 1880, 2282, 2393, 2536
SphI	GCATGC	1 cut(s)	2257
Sse9I	AATT	7 cut(s)	61, 391, 758, 880, 900, 1053, 1703
SspMI	CTAG	4 cut(s)	498, 1137, 1272, 2583
StyD4I	CCNGG	9 cut(s)	239, 273, 329, 839, 1101, 1328, 2496, 2509, 2577
StyI	CCWWGG	4 cut(s)	792, 1366, 1597, 1865
TaaI	ACNGT	3 cut(s)	382, 1152, 2062
TaiI	ACGT	3 cut(s)	150, 488, 2650
TaqI	TCGA	6 cut(s)	649, 779, 1179, 1591, 2271, 2537
TaqII	GACCGA	1 cut(s)	2135
TasI	AATT	7 cut(s)	61, 391, 758, 880, 900, 1053, 1703
TatI	WGTACW	6 cut(s)	626, 1062, 1139, 1421, 1839, 2097
TauI	GCSGC	5 cut(s)	99, 197, 1398, 2550, 2574
TfiI	GAWTC	5 cut(s)	905, 912, 1035, 1792, 2591
Tru1I	TTAA	4 cut(s)	489, 1170, 1665, 1959
Tru9I	TTAA	4 cut(s)	489, 1170, 1665, 1959
TscAI	CASTG	8 cut(s)	403, 418, 727, 1128, 1157, 1365, 1764, 2065
TseFI	GTSAC	5 cut(s)	481, 1389, 1538, 1631, 2585
TseI	GCWGC	9 cut(s)	740, 931, 950, 1565, 1898, 2231, 2407, 2544, 2574
Tsp45I	GTSAC	5 cut(s)	481, 1389, 1538, 1631, 2585
TspDTI	ATGAA	9 cut(s)	17, 220, 239, 904, 1716, 1937, 2348, 2461, 2648
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	8 cut(s)	403, 418, 727, 1128, 1157, 1365, 1764, 2065
VpaK11BI	GGWCC	6 cut(s)	101, 1363, 1433, 2030, 2347, 2494
XapI	RAATTY	4 cut(s)	391, 758, 1053, 1703
XceI	RCATGY	3 cut(s)	778, 802, 2257
XcmI	CCANNNNNNNNNTGG	2 cut(s)	418, 589
XhoI	CTCGAG	1 cut(s)	2536
XmiI	GTMKAC	2 cut(s)	1402, 1623
XmnI	GAANNNNTTC	2 cut(s)	8, 392
XspI	CTAG	4 cut(s)	498, 1137, 1272, 2583
ZraI	GACGTC	1 cut(s)	148
ZrmI	AGTACT	2 cut(s)	1141, 2099
Zsp2I	ATGCAT	2 cut(s)	523, 2506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.