Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017122

Physical Location & Seq

Genomic Coordinates Forward (+)

41153224 .. 41155871

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGAAGTGTCTCTTCTTTGTTTTTCTTTGCTTTACTTCCGCAATCCATTTCATTCTCGCTGCCAATTACATCCCATCTGAAAAAATCTTGCTAAACTGCGGCGGTCCGCCGGAGTCCACCGATTCCGATGGCCTGAAATGGACATCGGATATCGGCTCCAAGTTTGCCTCCGGCGCAAACTCCAACACTTCCTCTGCCGCCACTCAAGACCCTGCAGTCCCTGAGATTCCTTTCATGACTGCCAGGGTCTTTCATTCTGATTACACTTATAAATTTCCGGTCGCCTCCGGCCGGATGTTTGTTCGTCTTTTCTTTTATCCGGCTTCCTACGCCGGACTCAATGCCTCCGATGCTGTCTTTTCTGTCATGGTTGAGTCCTATACTGTTCTCAAAAACTTCAGTGTTGTCCAGACCACTGAGGCTTTAACTTACTCCGTTGTTACCAAGGAGTATGTGGTCAATGTTGAAGGAGAGTCTCTTAATGTTACTTTTAAGCCCTCTGGTAGTGTTGCGAATGCGTATGCCTTTGTGAATGGGATCGAGATTGTGTCCATGCCAGATATCTATAGTTCTACTGATGCTGTGATTGTGGGACAATCGACTACTTACACTATTGATAATAGCACGGCACTGGAGAATGTTTATCGGTTGAATGTGGGTGGAAAAGATATATCGCCGAGTCAGGATACTGGTCTGCTTAGGTCTTGGTATGATGACACTGCTTATCTGTTTGGAGCAGCCTTTGGTGTTGCAGAGTTTGCTGAGGGCAACGTGTCCATTACTTACCCTAAGTCCATGCCTACTTATGTTGCACCAGCTGATGTCTATTCCACAGCCAGGTCTATGGGGCCGAATAACAACATCAACCTCAACTACAATTTGACTTGGGTGTTTTCGATTGATTCTGGATTTTCATACCTTGTGAGGCTACATTTCTGTGAGGTTGCTGCAAACATAACCAAGCAGAACCAGAGAGTGTTTGATATCTTTCTCAATAATCAAACCGCCGAGCCTGCGTTTGATGTTGCTGCACTTACAGGAGGGAATGGAATTCCGGCATACAGAGATTATGTGGTACTAGTTCCAAATGGGAACCCGCAGGAGGATCTATGGCTTGCACTGCATCCAGAGCCTACTGAAAAACCACAATGGTATGATGCAATCCTAAATGGAGTCGAGATCTTCAAGATCAGTGATGCTACTGGCAATCTTGGAGGGCCTAATCCTATTCCCCGTCCCATGCAGGAGAACATTGATCCATCTAAGGTTAGAACTGGATCAGGTCATGGCAAGAGTAAGAGTAATAACCAGAAAGCGATTATTGCCGGGGGAGTTAGTGGTGGAATTGTCTTGGCCCTTATCCTTGGTTTCTTTGCTGTTTGCGTGTCACGCCGCCGTAGACAACCGAAGGACTCAAGTGCAAGTGAAGGGCCATCTGGTTGGCTCCCTCTGTCTTTGTATTCACAATCTGCAAGTTCTGCCAAGACAAACACAACACGAAGTTGTGCTTCCTCCCTCCCATCAAACCTCTGTCGTCACTTCTCATTTGCTGAGATCAAGGCAGCCACTAACAACTTTGAAGAGGCTCGACTCCTTGGGGTGGGAGGTTTTGGAAAAGTATACAAGGGTGACATTGATGGTGGAACAACCAAAGTCGCCATTAAGCGTGGAAACCCACTCTCTGATCAAGGTGTGCATGAATTTCAGACTGAGATTGAAATGCTCTCAAAGCTTCGTCATCGTCATCTTGTTTCACTGATTGGCTACTGTGAAGATAACTCTGAAATGATTCTTGTATACGATTACATGGCTTTTGGAACCCTGCGTGAGCATCTGTACAAGACCCAAAAGCCGCCACTCCCCTGGAAGCAAAGGCTTGAGATTTGCATTGGAGCTGCTCGTGGTTTACACTACCTTCATACTGGTGCCAAGCACACAATCATCCATAGAGATGTTAAGACAACTAACATTCTGTTAGATGAAAAGTGGGTTGCAAAGGTCTCAGACTTCGGCTTGTCCAAAACAGGTCCTACATTGGATAACACTCATGTCAGCACTGTTGTCAAAGGTAGCTTTGGTTGTCCTTTTGAGATCTTATGTGCTCGCCCAGCCTTGAACCCCACGCTTCCAAAGGAGCAAGTGAGCTTAGCAGAGTGGGCTGCCCATTGCCACAAGAAAGGCATGCTTGATCAGATCCTCGATCCTTATCTCAAGGGGAAGATCACACCTGAATGTTTCAGAAAGTTTGCAGAGACAGCAATGAAGTGTGTGTCAGACCAGAGCATTGACAGGCCATCAATGGGAGATGTTCTCTGGAACCTGGAGTTTGCATTGCAGCTACAGGAGAGTGCAGAAGAGACTGGCAGGGGTATTGGAATGGACATGGAGGAAGAGCCCTTCATGGCCTGTAAAGGGAAGAAGGACCTGGATGCATCACCAGGGTTCGATGGCAATGTGACAGACTCGAGGAGCAGTGGCATCAGCATGAGCATAGGGGGTCGCAGCCTGGCTAGTGACGATTCTGATGGACTGACACCAAGTGCTGTGTTCTCGCAGATCATGAACCCAAAGGGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

859

Amino Acids

93.62

Weight (kDa)

5.92

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	31 - 397	7.7e-36	Malectin-like domain
Malectin	PF11721	31 - 166	1.4e-10	Malectin domain
Malectin	PF11721	236 - 358	7.8e-11	Malectin domain
Pkinase	PF00069	526 - 678	2.3e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	530 - 680	2.6e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51550
fragaria_vesca	FvH4_6g09590
malus_domestica	MD04G1176400.v1.1 MD12G1190700.v1.1
prunus_persica	Prupe.6G295900_v2.0.a1
pyrus_communis	pycom04g15560 pycom12g17790
rosa_chinensis	RchiOBHm_Chr3g0460181
rosa_laevigata	RLG00000025037
rosa_multiflora	Rmu_sc0003763.1_g000007
rosa_roxburghii	Rroxscaffold_6G00419760
rosa_rugosa	Rorug03G0040600
rosa_wichuraiana	Rw3G008320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	1925
AccI	GTMKAC	3 cut(s)	1399, 1620, 1797
AciI	CCGC	9 cut(s)	39, 99, 102, 107, 198, 1005, 1097, 1393, 1853
AclWI	GGATC	6 cut(s)	545, 1113, 1250, 1285, 2188, 2195
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	272, 1050, 1700
AcuI	CTGAAG	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	2540
AfaI	GTAC	2 cut(s)	1077, 1838
AfiI	CCNNNNNNNGG	6 cut(s)	291, 837, 1102, 1600, 2300, 2412
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	467, 652, 1186, 1580, 1718, 2116
AhlI	ACTAGT	1 cut(s)	1078
AjnI	CCWGG	7 cut(s)	242, 836, 1862, 2319, 2424, 2437, 2505
AluBI	AGCT	6 cut(s)	818, 1732, 1895, 2073, 2145, 2338
AluI	AGCT	6 cut(s)	818, 1732, 1895, 2073, 2145, 2338
Alw21I	GWGCWC	1 cut(s)	2104
Alw26I	GTCTC	5 cut(s)	14, 480, 2005, 2246, 2351
AlwI	GGATC	6 cut(s)	545, 1113, 1250, 1285, 2188, 2195
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	2464
AoxI	GGCC	8 cut(s)	130, 289, 848, 1217, 1353, 1430, 2291, 2403
ApeKI	GCWGC	9 cut(s)	59, 737, 947, 1028, 1562, 1895, 2159, 2335, 2502
ApoI	RAATTY	3 cut(s)	272, 1050, 1700
Asp700I	GAANNNNTTC	1 cut(s)	1788
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	7 cut(s)	104, 848, 1217, 1354, 1430, 2027, 2422
AsuC2I	CCSGG	1 cut(s)	1327
AsuHPI	GGTGA	2 cut(s)	1640, 2427
AvaI	CYCGRG	1 cut(s)	2464
AvaII	GGWCC	3 cut(s)	104, 2027, 2422
BanI	GGYRCC	1 cut(s)	1925
BanII	GRGCYC	1 cut(s)	2397
BauI	CACGAG	1 cut(s)	1899
Bbv12I	GWGCWC	1 cut(s)	2104
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	9 cut(s)	46, 749, 934, 1015, 1574, 1882, 2146, 2347, 2514
BccI	CCATC	9 cut(s)	82, 122, 1267, 1441, 1528, 1631, 2302, 2441, 2519
BceAI	ACGGC	2 cut(s)	642, 1380
BciT130I	CCWGG	7 cut(s)	244, 838, 1864, 2321, 2426, 2439, 2507
BciVI	GTATCC	1 cut(s)	679
BclI	TGATCA	2 cut(s)	1684, 2188
BcnI	CCSGG	1 cut(s)	1327
BcoDI	GTCTC	5 cut(s)	14, 480, 2005, 2246, 2351
BcuI	ACTAGT	1 cut(s)	1078
BfaI	CTAG	2 cut(s)	1079, 2511
BfmI	CTRYAG	3 cut(s)	213, 565, 2339
BfuI	GTATCC	1 cut(s)	679
BglII	AGATCT	2 cut(s)	1179, 2091
BlpI	GCTNAGC	1 cut(s)	2146
Bme1390I	CCNGG	8 cut(s)	244, 838, 1327, 1864, 2321, 2426, 2439, 2507
Bme18I	GGWCC	3 cut(s)	104, 2027, 2422
BmeT110I	CYCGRG	1 cut(s)	2464
BmgT120I	GGNCC	7 cut(s)	104, 848, 1217, 1354, 1430, 2027, 2422
BmiI	GGNNCC	7 cut(s)	157, 849, 1094, 1445, 1819, 1927, 2318
BmrFI	CCNGG	8 cut(s)	244, 838, 1327, 1864, 2321, 2426, 2439, 2507
BmsI	GCATC	9 cut(s)	340, 568, 1132, 1147, 1186, 1840, 2419, 2441, 2487
BplI	GAGNNNNNCTC	2 cut(s)	2295, 2327
BpmI	CTGGAG	2 cut(s)	653, 2342
Bpu10I	CCTNAGC	2 cut(s)	698, 762
Bpu1102I	GCTNAGC	1 cut(s)	2146
BpuEI	CTTGAG	4 cut(s)	189, 1399, 1898, 2195
BpuMI	CCSGG	1 cut(s)	1327
BsaBI	GATNNNNATC	1 cut(s)	2205
BsaI	GGTCTC	1 cut(s)	2005
BsaJI	CCNNGG	7 cut(s)	243, 444, 1326, 1363, 1594, 1862, 2438
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	6 cut(s)	291, 837, 1102, 1600, 2300, 2412
Bse1I	ACTGG	6 cut(s)	636, 694, 1207, 1279, 1927, 2365
Bse3DI	GCAATG	4 cut(s)	2164, 2265, 2330, 2458
Bse8I	GATNNNNATC	1 cut(s)	2205
BseBI	CCWGG	7 cut(s)	244, 838, 1864, 2321, 2426, 2439, 2507
BseDI	CCNNGG	7 cut(s)	243, 444, 1326, 1363, 1594, 1862, 2438
BseGI	GGATG	5 cut(s)	69, 300, 1123, 1941, 2434
BseJI	GATNNNNATC	1 cut(s)	2205
BseLI	CCNNNNNNNGG	6 cut(s)	291, 837, 1102, 1600, 2300, 2412
BseMI	GCAATG	4 cut(s)	2164, 2265, 2330, 2458
BseMII	CTCAG	6 cut(s)	213, 408, 753, 1542, 1701, 2016
BseNI	ACTGG	6 cut(s)	636, 694, 1207, 1279, 1927, 2365
BseRI	GAGGAG	1 cut(s)	2482
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	9 cut(s)	46, 749, 934, 1015, 1574, 1882, 2146, 2347, 2514
BseYI	CCCAGC	1 cut(s)	2107
BsgI	GTGCAG	2 cut(s)	1014, 2370
Bsh1285I	CGRYCG	2 cut(s)	282, 292
BshFI	GGCC	8 cut(s)	132, 291, 850, 1219, 1355, 1432, 2293, 2405
BshNI	GGYRCC	1 cut(s)	1925
BsiEI	CGRYCG	2 cut(s)	282, 292
BsiHKAI	GWGCWC	1 cut(s)	2104
BsiHKCI	CYCGRG	1 cut(s)	2464
BsiSI	CCGG	9 cut(s)	110, 171, 278, 288, 292, 320, 333, 1055, 1326
BslFI	GGGAC	3 cut(s)	203, 606, 1221
BslI	CCNNNNNNNGG	6 cut(s)	291, 837, 1102, 1600, 2300, 2412
BsmAI	GTCTC	5 cut(s)	14, 480, 2005, 2246, 2351
BsmFI	GGGAC	3 cut(s)	203, 606, 1221
BsmI	GAATGC	1 cut(s)	520
BsnI	GGCC	8 cut(s)	132, 291, 850, 1219, 1355, 1432, 2293, 2405
Bso31I	GGTCTC	1 cut(s)	2005
BsoBI	CYCGRG	1 cut(s)	2464
Bsp1286I	GDGCHC	2 cut(s)	2104, 2397
Bsp1407I	TGTACA	1 cut(s)	1836
Bsp1720I	GCTNAGC	1 cut(s)	2146
BspACI	CCGC	9 cut(s)	39, 99, 102, 107, 198, 1005, 1097, 1393, 1853
BspANI	GGCC	8 cut(s)	132, 291, 850, 1219, 1355, 1432, 2293, 2405
BspCNI	CTCAG	6 cut(s)	214, 409, 754, 1543, 1702, 2015
BspHI	TCATGA	2 cut(s)	234, 2559
BspLI	GGNNCC	7 cut(s)	157, 849, 1094, 1445, 1819, 1927, 2318
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	6 cut(s)	545, 1113, 1250, 1285, 2188, 2195
BspQI	GCTCTTC	1 cut(s)	2385
BspT107I	GGYRCC	1 cut(s)	1925
BspTNI	GGTCTC	1 cut(s)	2005
BsrDI	GCAATG	4 cut(s)	2164, 2265, 2330, 2458
BsrGI	TGTACA	1 cut(s)	1836
BsrI	ACTGG	6 cut(s)	636, 694, 1207, 1279, 1927, 2365
BssECI	CCNNGG	7 cut(s)	243, 444, 1326, 1363, 1594, 1862, 2438
BssNAI	GTATAC	2 cut(s)	1621, 1798
BssSI	CACGAG	1 cut(s)	1899
BssT1I	CCWWGG	3 cut(s)	444, 1363, 1594
Bst1107I	GTATAC	2 cut(s)	1621, 1798
Bst2BI	CACGAG	1 cut(s)	1899
Bst2UI	CCWGG	7 cut(s)	244, 838, 1864, 2321, 2426, 2439, 2507
Bst4CI	ACNGT	3 cut(s)	385, 1769, 2059
Bst6I	CTCTTC	4 cut(s)	17, 1575, 2349, 2385
BstAPI	GCANNNNNTGC	2 cut(s)	758, 1478
BstAUI	TGTACA	1 cut(s)	1836
BstC8I	GCNNGC	4 cut(s)	1014, 1116, 2104, 2183
BstF5I	GGATG	5 cut(s)	69, 300, 1123, 1941, 2434
BstHHI	GCGC	1 cut(s)	176
BstMAI	GTCTC	5 cut(s)	14, 480, 2005, 2246, 2351
BstMCI	CGRYCG	2 cut(s)	282, 292
BstNI	CCWGG	7 cut(s)	244, 838, 1864, 2321, 2426, 2439, 2507
BstNSI	RCATGY	1 cut(s)	2185
BstSCI	CCNGG	8 cut(s)	242, 836, 1325, 1862, 2319, 2424, 2437, 2505
BstSFI	CTRYAG	3 cut(s)	213, 565, 2339
BstV1I	GCAGC	9 cut(s)	46, 749, 934, 1015, 1574, 1882, 2146, 2347, 2514
BstX2I	RGATCY	4 cut(s)	1105, 1179, 2091, 2193
BstXI	CCANNNNNNTGG	3 cut(s)	844, 1440, 1863
BstYI	RGATCY	4 cut(s)	1105, 1179, 2091, 2193
BstZ17I	GTATAC	2 cut(s)	1621, 1798
BstZI	CGGCCG	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	8 cut(s)	132, 291, 850, 1219, 1355, 1432, 2293, 2405
BtsCI	GGATG	5 cut(s)	69, 300, 1123, 1941, 2434
BtsI	GCAGTG	3 cut(s)	717, 1118, 2479
BtsIMutI	CAGTG	9 cut(s)	406, 414, 629, 717, 1118, 1198, 1754, 2055, 2479
Cac8I	GCNNGC	4 cut(s)	1014, 1116, 2104, 2183
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	2 cut(s)	234, 2559
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	7 cut(s)	104, 848, 1217, 1354, 1430, 2027, 2422
CpoI	CGGWCCG	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	1076, 1837
CspI	CGGWCCG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	1076, 1837
DraIII	CACNNNGTG	1 cut(s)	2540
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	4 cut(s)	17, 1575, 2349, 2385
EarI	CTCTTC	4 cut(s)	17, 1575, 2349, 2385
EciI	GGCGGA	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	3 cut(s)	444, 1363, 1594
Eco24I	GRGCYC	1 cut(s)	2397
Eco31I	GGTCTC	1 cut(s)	2005
Eco32I	GATATC	3 cut(s)	151, 562, 985
Eco47I	GGWCC	3 cut(s)	104, 2027, 2422
Eco52I	CGGCCG	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	2464
EcoO109I	RGGNCCY	3 cut(s)	1217, 2027, 2422
EcoRI	GAATTC	1 cut(s)	1050
EcoRII	CCWGG	7 cut(s)	242, 836, 1862, 2319, 2424, 2437, 2505
EcoRV	GATATC	3 cut(s)	151, 562, 985
EcoT14I	CCWWGG	3 cut(s)	444, 1363, 1594
EcoT22I	ATGCAT	1 cut(s)	2434
EcoT38I	GRGCYC	1 cut(s)	2397
ErhI	CCWWGG	3 cut(s)	444, 1363, 1594
FalI	AAGNNNNNCTT	5 cut(s)	28, 1492, 1524, 2169, 2201
FaqI	GGGAC	3 cut(s)	203, 606, 1221
FauI	CCCGC	1 cut(s)	1104
FbaI	TGATCA	2 cut(s)	1684, 2188
FblI	GTMKAC	3 cut(s)	1399, 1620, 1797
FokI	GGATG	5 cut(s)	56, 307, 1110, 1928, 2441
FriOI	GRGCYC	1 cut(s)	2397
FspBI	CTAG	2 cut(s)	1079, 2511
GlaI	GCGC	1 cut(s)	175
GsaI	CCCAGC	1 cut(s)	2111
GsuI	CTGGAG	2 cut(s)	653, 2342
HaeIII	GGCC	8 cut(s)	132, 291, 850, 1219, 1355, 1432, 2293, 2405
HapII	CCGG	9 cut(s)	110, 171, 278, 288, 292, 320, 333, 1055, 1326
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	1730
HpaII	CCGG	9 cut(s)	110, 171, 278, 288, 292, 320, 333, 1055, 1326
HphI	GGTGA	2 cut(s)	1640, 2427
Hpy166II	GTNNAC	5 cut(s)	117, 1400, 1621, 1798, 1907
Hpy8I	GTNNAC	5 cut(s)	117, 1400, 1621, 1798, 1907
HpyAV	CCTTC	6 cut(s)	461, 1402, 1421, 1925, 2407, 2413
HpyCH4III	ACNGT	3 cut(s)	385, 1769, 2059
HpyCH4IV	ACGT	2 cut(s)	771, 2575
HpySE526I	ACGT	2 cut(s)	771, 2575
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	2 cut(s)	1684, 2188
LguI	GCTCTTC	1 cut(s)	2385
LmnI	GCTCC	6 cut(s)	161, 734, 1449, 1892, 2134, 2469
Lsp1109I	GCAGC	9 cut(s)	46, 749, 934, 1015, 1574, 1882, 2146, 2347, 2514
LweI	GCATC	9 cut(s)	340, 568, 1132, 1147, 1186, 1840, 2419, 2441, 2487
MaeI	CTAG	2 cut(s)	1079, 2511
MaeII	ACGT	2 cut(s)	771, 2575
MaeIII	GTNAC	7 cut(s)	439, 484, 1386, 1535, 1628, 2455, 2513
MboII	GAAGA	8 cut(s)	4, 1174, 1592, 1784, 2230, 2366, 2402, 2428
MflI	RGATCY	4 cut(s)	1105, 1179, 2091, 2193
MhlI	GDGCHC	2 cut(s)	2104, 2397
MluCI	AATT	6 cut(s)	64, 272, 877, 1050, 1344, 1700
MlyI	GAGTC	9 cut(s)	122, 330, 383, 482, 688, 1182, 1406, 1584, 2456
MmeI	TCCRAC	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	2434
MroXI	GAANNNNTTC	1 cut(s)	1788
MseI	TTAA	5 cut(s)	425, 480, 492, 1662, 1956
MslI	CAYNNNNRTG	5 cut(s)	936, 1923, 1950, 2230, 2483
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	9 cut(s)	110, 171, 278, 288, 292, 320, 333, 1055, 1326
MspR9I	CCNGG	8 cut(s)	244, 838, 1327, 1864, 2321, 2426, 2439, 2507
Mva1269I	GAATGC	1 cut(s)	520
MvaI	CCWGG	7 cut(s)	244, 838, 1864, 2321, 2426, 2439, 2507
NciI	CCSGG	1 cut(s)	1327
NlaIV	GGNNCC	7 cut(s)	157, 849, 1094, 1445, 1819, 1927, 2318
NmeAIII	GCCGAG	2 cut(s)	702, 1033
NmuCI	GTSAC	5 cut(s)	1386, 1535, 1628, 2455, 2513
NsiI	ATGCAT	1 cut(s)	2434
NspI	RCATGY	1 cut(s)	2185
PaeI	GCATGC	1 cut(s)	2185
PaeR7I	CTCGAG	1 cut(s)	2464
PagI	TCATGA	2 cut(s)	234, 2559
PciSI	GCTCTTC	1 cut(s)	2385
PctI	GAATGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	1788
PfeI	GAWTC	5 cut(s)	122, 226, 902, 1789, 2519
PleI	GAGTC	9 cut(s)	121, 330, 382, 481, 687, 1181, 1406, 1584, 2456
PpsI	GAGTC	9 cut(s)	121, 330, 382, 481, 687, 1181, 1406, 1584, 2456
PpuMI	RGGWCCY	2 cut(s)	2027, 2422
PsiI	TTATAA	1 cut(s)	270
Psp5II	RGGWCCY	2 cut(s)	2027, 2422
Psp6I	CCWGG	7 cut(s)	242, 836, 1862, 2319, 2424, 2437, 2505
PspFI	CCCAGC	1 cut(s)	2107
PspGI	CCWGG	7 cut(s)	242, 836, 1862, 2319, 2424, 2437, 2505
PspN4I	GGNNCC	7 cut(s)	157, 849, 1094, 1445, 1819, 1927, 2318
PspPI	GGNCC	7 cut(s)	104, 848, 1217, 1354, 1430, 2027, 2422
PspPPI	RGGWCCY	2 cut(s)	2027, 2422
PspXI	VCTCGAGB	1 cut(s)	2464
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	4 cut(s)	1105, 1179, 2091, 2193
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	2 cut(s)	1077, 1838
RsaNI	GTAC	2 cut(s)	1076, 1837
RseI	CAYNNNNRTG	5 cut(s)	936, 1923, 1950, 2230, 2483
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	2385
SaqAI	TTAA	5 cut(s)	425, 480, 492, 1662, 1956
Sau96I	GGNCC	7 cut(s)	104, 848, 1217, 1354, 1430, 2027, 2422
SchI	GAGTC	9 cut(s)	122, 330, 383, 482, 688, 1182, 1406, 1584, 2456
ScrFI	CCNGG	8 cut(s)	244, 838, 1327, 1864, 2321, 2426, 2439, 2507
SduI	GDGCHC	2 cut(s)	2104, 2397
SfaNI	GCATC	9 cut(s)	340, 568, 1132, 1147, 1186, 1840, 2419, 2441, 2487
SfcI	CTRYAG	3 cut(s)	213, 565, 2339
Sfr274I	CTCGAG	1 cut(s)	2464
SinI	GGWCC	3 cut(s)	104, 2027, 2422
SlaI	CTCGAG	1 cut(s)	2464
SmiMI	CAYNNNNRTG	5 cut(s)	936, 1923, 1950, 2230, 2483
SmlI	CTYRAG	5 cut(s)	204, 1414, 1877, 2210, 2464
SmoI	CTYRAG	5 cut(s)	204, 1414, 1877, 2210, 2464
SpeI	ACTAGT	1 cut(s)	1078
SphI	GCATGC	1 cut(s)	2185
Sse9I	AATT	6 cut(s)	64, 272, 877, 1050, 1344, 1700
SsiI	CCGC	9 cut(s)	39, 99, 102, 107, 198, 1005, 1097, 1393, 1853
SspMI	CTAG	2 cut(s)	1079, 2511
StyD4I	CCNGG	8 cut(s)	242, 836, 1325, 1862, 2319, 2424, 2437, 2505
StyI	CCWWGG	3 cut(s)	444, 1363, 1594
TaaI	ACNGT	3 cut(s)	385, 1769, 2059
TaiI	ACGT	2 cut(s)	774, 2578
TaqI	TCGA	8 cut(s)	540, 599, 896, 1176, 1588, 2199, 2445, 2465
TasI	AATT	6 cut(s)	64, 272, 877, 1050, 1344, 1700
TatI	WGTACW	1 cut(s)	1836
TauI	GCSGC	4 cut(s)	102, 200, 1395, 1855
TfiI	GAWTC	5 cut(s)	122, 226, 902, 1789, 2519
Tru1I	TTAA	5 cut(s)	425, 480, 492, 1662, 1956
Tru9I	TTAA	5 cut(s)	425, 480, 492, 1662, 1956
TscAI	CASTG	9 cut(s)	406, 421, 636, 724, 1125, 1198, 1761, 2062, 2479
TseFI	GTSAC	5 cut(s)	1386, 1535, 1628, 2455, 2513
TseI	GCWGC	9 cut(s)	59, 737, 947, 1028, 1562, 1895, 2159, 2335, 2502
Tsp45I	GTSAC	5 cut(s)	1386, 1535, 1628, 2455, 2513
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	9 cut(s)	406, 421, 636, 724, 1125, 1198, 1761, 2062, 2479
VpaK11BI	GGWCC	3 cut(s)	104, 2027, 2422
XapI	RAATTY	3 cut(s)	272, 1050, 1700
XceI	RCATGY	1 cut(s)	2185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	2464
XmiI	GTMKAC	3 cut(s)	1399, 1620, 1797
XmnI	GAANNNNTTC	1 cut(s)	1788
XspI	CTAG	2 cut(s)	1079, 2511
Zsp2I	ATGCAT	1 cut(s)	2434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.