Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g10030 |
| malus_domestica | MD04G1173200.v1.1 MD12G1186600.v1.1 |
| prunus_persica | Prupe.6G292100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0460711 |
| rosa_laevigata | RLG00000024986 |
| rosa_multiflora | Rmu_sc0007459.1_g000001 Rmu_sc0011069.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00419280 |
| rosa_rugosa | Rorug03G0045400 |
| rosa_samantha | Rh3AG102900 Rh3DG108100 |
| rosa_wichuraiana | Rw3G008760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1308 |
| Acc36I | ACCTGC | 2 cut(s) | 1141, 1308 |
| AccB1I | GGYRCC | 1 cut(s) | 242 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1527 |
| AccI | GTMKAC | 1 cut(s) | 297 |
| AccII | CGCG | 3 cut(s) | 368, 515, 541 |
| AclI | AACGTT | 1 cut(s) | 1425 |
| AclWI | GGATC | 2 cut(s) | 221, 1184 |
| AcsI | RAATTY | 2 cut(s) | 493, 772 |
| AcuI | CTGAAG | 4 cut(s) | 377, 870, 1536, 1576 |
| AcyI | GRCGYC | 1 cut(s) | 1234 |
| AfaI | GTAC | 1 cut(s) | 1416 |
| AfeI | AGCGCT | 1 cut(s) | 987 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 284, 324, 1527 |
| AflII | CTTAAG | 1 cut(s) | 1475 |
| AgeI | ACCGGT | 1 cut(s) | 1060 |
| AgsI | TTSAA | 8 cut(s) | 56, 460, 625, 946, 1126, 1259, 1368, 1430 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 257, 289, 671, 703, 1137, 1169 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1006, 1038 |
| AluBI | AGCT | 8 cut(s) | 89, 148, 463, 826, 860, 1121, 1358, 1456 |
| AluI | AGCT | 8 cut(s) | 89, 148, 463, 826, 860, 1121, 1358, 1456 |
| Alw21I | GWGCWC | 1 cut(s) | 1197 |
| Alw26I | GTCTC | 2 cut(s) | 1051, 1589 |
| AlwI | GGATC | 2 cut(s) | 221, 1184 |
| Aor51HI | AGCGCT | 1 cut(s) | 987 |
| AoxI | GGCC | 1 cut(s) | 112 |
| ApeKI | GCWGC | 5 cut(s) | 86, 130, 180, 845, 1453 |
| ApoI | RAATTY | 2 cut(s) | 493, 772 |
| AsiGI | ACCGGT | 1 cut(s) | 1060 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 548 |
| AspLEI | GCGC | 5 cut(s) | 355, 368, 517, 541, 988 |
| AsuHPI | GGTGA | 5 cut(s) | 55, 94, 115, 920, 1169 |
| AsuII | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| AsuNHI | GCTAGC | 1 cut(s) | 1456 |
| BanI | GGYRCC | 1 cut(s) | 242 |
| Bbv12I | GWGCWC | 1 cut(s) | 1197 |
| BbvI | GCAGC | 5 cut(s) | 98, 142, 167, 832, 1465 |
| BccI | CCATC | 5 cut(s) | 629, 724, 739, 1526, 1552 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 150, 184 |
| BclI | TGATCA | 7 cut(s) | 249, 309, 331, 375, 607, 1083, 1350 |
| BcoDI | GTCTC | 2 cut(s) | 1051, 1589 |
| BfaI | CTAG | 1 cut(s) | 1457 |
| BfoI | RGCGCY | 1 cut(s) | 989 |
| BfrI | CTTAAG | 1 cut(s) | 1475 |
| BfuAI | ACCTGC | 2 cut(s) | 1141, 1308 |
| BisI | GCNGC | 8 cut(s) | 87, 131, 173, 181, 695, 723, 846, 1454 |
| BlpI | GCTNAGC | 1 cut(s) | 1437 |
| BlsI | GCNGC | 8 cut(s) | 88, 132, 174, 182, 696, 724, 847, 1455 |
| BmiI | GGNNCC | 2 cut(s) | 244, 1470 |
| BmsI | GCATC | 4 cut(s) | 170, 642, 748, 1471 |
| BmtI | GCTAGC | 1 cut(s) | 1460 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1437 |
| Bpu14I | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| BsaHI | GRCGYC | 1 cut(s) | 1234 |
| BsaI | GGTCTC | 1 cut(s) | 1051 |
| BsaJI | CCNNGG | 2 cut(s) | 219, 1102 |
| BsaWI | WCCGGW | 2 cut(s) | 317, 1060 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 732, 762 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 284, 324, 1527 |
| Bse118I | RCCGGY | 3 cut(s) | 110, 1060, 1236 |
| Bse3DI | GCAATG | 2 cut(s) | 1197, 1448 |
| BseDI | CCNNGG | 2 cut(s) | 219, 1102 |
| BseGI | GGATG | 6 cut(s) | 229, 640, 763, 1053, 1486, 1537 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 284, 324, 1527 |
| BseMI | GCAATG | 2 cut(s) | 1197, 1448 |
| BseMII | CTCAG | 5 cut(s) | 209, 555, 648, 891, 1428 |
| BseRI | GAGGAG | 3 cut(s) | 128, 403, 583 |
| BseXI | GCAGC | 5 cut(s) | 98, 142, 167, 832, 1465 |
| BseYI | CCCAGC | 3 cut(s) | 126, 175, 463 |
| Bsh1236I | CGCG | 3 cut(s) | 368, 515, 541 |
| BshFI | GGCC | 1 cut(s) | 114 |
| BshNI | GGYRCC | 1 cut(s) | 242 |
| BshTI | ACCGGT | 1 cut(s) | 1060 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1197 |
| BsiSI | CCGG | 4 cut(s) | 111, 318, 1061, 1237 |
| BslFI | GGGAC | 3 cut(s) | 546, 725, 994 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 284, 324, 1527 |
| BsmAI | GTCTC | 2 cut(s) | 1051, 1589 |
| BsmFI | GGGAC | 3 cut(s) | 546, 725, 994 |
| BsmI | GAATGC | 1 cut(s) | 1081 |
| BsnI | GGCC | 1 cut(s) | 114 |
| Bso31I | GGTCTC | 1 cut(s) | 1051 |
| Bsp119I | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1197 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1437 |
| Bsp19I | CCATGG | 2 cut(s) | 219, 1102 |
| BspANI | GGCC | 1 cut(s) | 114 |
| BspCNI | CTCAG | 5 cut(s) | 208, 556, 649, 892, 1429 |
| BspFNI | CGCG | 3 cut(s) | 368, 515, 541 |
| BspHI | TCATGA | 2 cut(s) | 591, 934 |
| BspLI | GGNNCC | 2 cut(s) | 244, 1470 |
| BspMI | ACCTGC | 2 cut(s) | 1141, 1308 |
| BspOI | GCTAGC | 1 cut(s) | 1460 |
| BspPI | GGATC | 2 cut(s) | 221, 1184 |
| BspT104I | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| BspT107I | GGYRCC | 1 cut(s) | 242 |
| BspTI | CTTAAG | 1 cut(s) | 1475 |
| BspTNI | GGTCTC | 1 cut(s) | 1051 |
| BsrDI | GCAATG | 2 cut(s) | 1197, 1448 |
| BsrFI | RCCGGY | 3 cut(s) | 110, 1060, 1236 |
| BssAI | RCCGGY | 3 cut(s) | 110, 1060, 1236 |
| BssECI | CCNNGG | 2 cut(s) | 219, 1102 |
| BssNI | GRCGYC | 1 cut(s) | 1234 |
| BssT1I | CCWWGG | 2 cut(s) | 219, 1102 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstACI | GRCGYC | 1 cut(s) | 1234 |
| BstAFI | CTTAAG | 1 cut(s) | 1475 |
| BstBI | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| BstC8I | GCNNGC | 3 cut(s) | 364, 843, 1458 |
| BstDEI | CTNAG | 7 cut(s) | 5, 195, 564, 657, 900, 1313, 1437 |
| BstDSI | CCRYGG | 2 cut(s) | 219, 1102 |
| BstF5I | GGATG | 6 cut(s) | 229, 640, 763, 1053, 1486, 1537 |
| BstFNI | CGCG | 3 cut(s) | 368, 515, 541 |
| BstH2I | RGCGCY | 1 cut(s) | 989 |
| BstHHI | GCGC | 5 cut(s) | 355, 368, 517, 541, 988 |
| BstMAI | GTCTC | 2 cut(s) | 1051, 1589 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 359, 652 |
| BstNSI | RCATGY | 2 cut(s) | 34, 701 |
| BstUI | CGCG | 3 cut(s) | 368, 515, 541 |
| BstV1I | GCAGC | 5 cut(s) | 98, 142, 167, 832, 1465 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1087 |
| BsuRI | GGCC | 1 cut(s) | 114 |
| BtgI | CCRYGG | 2 cut(s) | 219, 1102 |
| BtgZI | GCGATG | 1 cut(s) | 136 |
| BtsCI | GGATG | 6 cut(s) | 229, 640, 763, 1053, 1486, 1537 |
| BtsI | GCAGTG | 1 cut(s) | 1108 |
| BtsIMutI | CAGTG | 1 cut(s) | 1108 |
| BveI | ACCTGC | 2 cut(s) | 1141, 1308 |
| Cac8I | GCNNGC | 3 cut(s) | 364, 843, 1458 |
| CciI | TCATGA | 2 cut(s) | 591, 934 |
| CfoI | GCGC | 5 cut(s) | 355, 368, 517, 541, 988 |
| Cfr10I | RCCGGY | 3 cut(s) | 110, 1060, 1236 |
| CseI | GACGC | 2 cut(s) | 880, 1242 |
| Csp6I | GTAC | 1 cut(s) | 1415 |
| CspAI | ACCGGT | 1 cut(s) | 1060 |
| CviQI | GTAC | 1 cut(s) | 1415 |
| DdeI | CTNAG | 7 cut(s) | 5, 195, 564, 657, 900, 1313, 1437 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| EciI | GGCGGA | 1 cut(s) | 647 |
| Eco130I | CCWWGG | 2 cut(s) | 219, 1102 |
| Eco31I | GGTCTC | 1 cut(s) | 1051 |
| Eco32I | GATATC | 2 cut(s) | 597, 879 |
| Eco47III | AGCGCT | 1 cut(s) | 987 |
| Eco57I | CTGAAG | 4 cut(s) | 377, 870, 1536, 1576 |
| EcoRI | GAATTC | 2 cut(s) | 493, 772 |
| EcoRV | GATATC | 2 cut(s) | 597, 879 |
| EcoT14I | CCWWGG | 2 cut(s) | 219, 1102 |
| ErhI | CCWWGG | 2 cut(s) | 219, 1102 |
| FaqI | GGGAC | 3 cut(s) | 546, 725, 994 |
| FbaI | TGATCA | 7 cut(s) | 249, 309, 331, 375, 607, 1083, 1350 |
| FblI | GTMKAC | 1 cut(s) | 297 |
| Fnu4HI | GCNGC | 8 cut(s) | 87, 131, 173, 181, 695, 723, 846, 1454 |
| FokI | GGATG | 6 cut(s) | 236, 647, 770, 1060, 1493, 1544 |
| Fsp4HI | GCNGC | 8 cut(s) | 87, 131, 173, 181, 695, 723, 846, 1454 |
| FspBI | CTAG | 1 cut(s) | 1457 |
| GlaI | GCGC | 5 cut(s) | 354, 367, 516, 540, 987 |
| GluI | GCNGC | 8 cut(s) | 87, 131, 173, 181, 695, 723, 846, 1454 |
| GsaI | CCCAGC | 3 cut(s) | 130, 179, 467 |
| HaeII | RGCGCY | 1 cut(s) | 989 |
| HaeIII | GGCC | 1 cut(s) | 114 |
| HapII | CCGG | 4 cut(s) | 111, 318, 1061, 1237 |
| HgaI | GACGC | 2 cut(s) | 880, 1242 |
| HhaI | GCGC | 5 cut(s) | 355, 368, 517, 541, 988 |
| Hin1I | GRCGYC | 1 cut(s) | 1234 |
| Hin6I | GCGC | 5 cut(s) | 353, 366, 515, 539, 986 |
| HinP1I | GCGC | 5 cut(s) | 353, 366, 515, 539, 986 |
| HindIII | AAGCTT | 1 cut(s) | 1119 |
| HinfI | GANTC | 8 cut(s) | 289, 413, 442, 473, 931, 938, 958, 1255 |
| HpaII | CCGG | 4 cut(s) | 111, 318, 1061, 1237 |
| HphI | GGTGA | 5 cut(s) | 55, 94, 115, 920, 1169 |
| Hpy166II | GTNNAC | 2 cut(s) | 298, 511 |
| Hpy188I | TCNGA | 8 cut(s) | 254, 284, 309, 478, 492, 565, 612, 963 |
| Hpy188III | TCNNGA | 3 cut(s) | 592, 833, 935 |
| Hpy8I | GTNNAC | 2 cut(s) | 298, 511 |
| Hpy99I | CGWCG | 1 cut(s) | 45 |
| HpyAV | CCTTC | 6 cut(s) | 106, 352, 444, 538, 1223, 1374 |
| HpyCH4IV | ACGT | 2 cut(s) | 1181, 1425 |
| HpyCH4V | TGCA | 6 cut(s) | 841, 1113, 1136, 1150, 1299, 1484 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 359, 652 |
| HpyF3I | CTNAG | 7 cut(s) | 5, 195, 564, 657, 900, 1313, 1437 |
| HpySE526I | ACGT | 2 cut(s) | 1181, 1425 |
| Hsp92I | GRCGYC | 1 cut(s) | 1234 |
| HspAI | GCGC | 5 cut(s) | 353, 366, 515, 539, 986 |
| Ksp22I | TGATCA | 7 cut(s) | 249, 309, 331, 375, 607, 1083, 1350 |
| LmnI | GCTCC | 3 cut(s) | 570, 815, 823 |
| Lsp1109I | GCAGC | 5 cut(s) | 98, 142, 167, 832, 1465 |
| LweI | GCATC | 4 cut(s) | 170, 642, 748, 1471 |
| MaeI | CTAG | 1 cut(s) | 1457 |
| MaeII | ACGT | 2 cut(s) | 1181, 1425 |
| MaeIII | GTNAC | 3 cut(s) | 868, 1106, 1247 |
| MhlI | GDGCHC | 1 cut(s) | 1197 |
| MluCI | AATT | 5 cut(s) | 493, 772, 1269, 1430, 1463 |
| MlyI | GAGTC | 1 cut(s) | 947 |
| MmeI | TCCRAC | 2 cut(s) | 801, 894 |
| MroXI | GAANNNNTTC | 1 cut(s) | 548 |
| MseI | TTAA | 2 cut(s) | 1284, 1476 |
| MslI | CAYNNNNRTG | 2 cut(s) | 68, 1085 |
| MspA1I | CMGCKG | 2 cut(s) | 175, 1543 |
| MspCI | CTTAAG | 1 cut(s) | 1475 |
| MspI | CCGG | 4 cut(s) | 111, 318, 1061, 1237 |
| Mva1269I | GAATGC | 1 cut(s) | 1081 |
| MvnI | CGCG | 3 cut(s) | 368, 515, 541 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 359, 652 |
| NcoI | CCATGG | 2 cut(s) | 219, 1102 |
| NheI | GCTAGC | 1 cut(s) | 1456 |
| NlaIV | GGNNCC | 2 cut(s) | 244, 1470 |
| NmeAIII | GCCGAG | 1 cut(s) | 1566 |
| NmuCI | GTSAC | 2 cut(s) | 868, 1106 |
| NspI | RCATGY | 2 cut(s) | 34, 701 |
| NspV | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| PagI | TCATGA | 2 cut(s) | 591, 934 |
| PaqCI | CACCTGC | 1 cut(s) | 1308 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 773 |
| PctI | GAATGC | 1 cut(s) | 1081 |
| PdmI | GAANNNNTTC | 1 cut(s) | 548 |
| PfeI | GAWTC | 7 cut(s) | 289, 413, 442, 473, 931, 958, 1255 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1527 |
| PinAI | ACCGGT | 1 cut(s) | 1060 |
| PkrI | GCNGC | 8 cut(s) | 88, 132, 174, 182, 696, 724, 847, 1455 |
| PleI | GAGTC | 1 cut(s) | 946 |
| PpsI | GAGTC | 1 cut(s) | 946 |
| Psp1406I | AACGTT | 1 cut(s) | 1425 |
| PspFI | CCCAGC | 3 cut(s) | 126, 175, 463 |
| PspN4I | GGNNCC | 2 cut(s) | 244, 1470 |
| RsaI | GTAC | 1 cut(s) | 1416 |
| RsaNI | GTAC | 1 cut(s) | 1415 |
| RseI | CAYNNNNRTG | 2 cut(s) | 68, 1085 |
| SaqAI | TTAA | 2 cut(s) | 1284, 1476 |
| SatI | GCNGC | 8 cut(s) | 87, 131, 173, 181, 695, 723, 846, 1454 |
| SchI | GAGTC | 1 cut(s) | 947 |
| SduI | GDGCHC | 1 cut(s) | 1197 |
| SfaNI | GCATC | 4 cut(s) | 170, 642, 748, 1471 |
| SfuI | TTCGAA | 3 cut(s) | 207, 411, 1004 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 68, 1085 |
| SmlI | CTYRAG | 2 cut(s) | 90, 1475 |
| SmoI | CTYRAG | 2 cut(s) | 90, 1475 |
| Sse9I | AATT | 5 cut(s) | 493, 772, 1269, 1430, 1463 |
| SspMI | CTAG | 1 cut(s) | 1457 |
| StyI | CCWWGG | 2 cut(s) | 219, 1102 |
| TaiI | ACGT | 2 cut(s) | 1184, 1428 |
| TaqI | TCGA | 7 cut(s) | 81, 207, 411, 552, 776, 1004, 1305 |
| TasI | AATT | 5 cut(s) | 493, 772, 1269, 1430, 1463 |
| TauI | GCSGC | 3 cut(s) | 175, 697, 725 |
| TfiI | GAWTC | 7 cut(s) | 289, 413, 442, 473, 931, 958, 1255 |
| Tru1I | TTAA | 2 cut(s) | 1284, 1476 |
| Tru9I | TTAA | 2 cut(s) | 1284, 1476 |
| TscAI | CASTG | 1 cut(s) | 1115 |
| TseFI | GTSAC | 2 cut(s) | 868, 1106 |
| TseI | GCWGC | 5 cut(s) | 86, 130, 180, 845, 1453 |
| Tsp45I | GTSAC | 2 cut(s) | 868, 1106 |
| TspRI | CASTG | 1 cut(s) | 1115 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1527 |
| Vha464I | CTTAAG | 1 cut(s) | 1475 |
| XapI | RAATTY | 2 cut(s) | 493, 772 |
| XceI | RCATGY | 2 cut(s) | 34, 701 |
| XmiI | GTMKAC | 1 cut(s) | 297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 548 |
| XspI | CTAG | 1 cut(s) | 1457 |