Prupe.6G292100_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017325
Physical Location & Seq
Forward (+)
26918752 .. 26920357
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G292100.1

Sequence Viewer

Length: 1545 bp
ATGAAACAAGTCGAAGCAGCCCATGGTTTCCTCACGAAAACAGGTCTCTTCTTTACTCACACATCCATCGTCGCAAAGCTCGTTGCTTTCGCATCACTGTCACCGCTAGGCTGCCTCGTGCACGCTCAAGCCCTGTTCGAAGAGACCACCATGGACGACCCCTTCACCTGCAACACCATGATCAGGGCTTACACCAACAGCGTCTTCCCCATCAAAGCTATACATATTTACAACCATATGCAGGAAACGAATGTTAGGTCTGATCATTTCACATACAATTTTGCGCTCAAGGCTTGTGCTAGAGTGATGAAACGTATGGAAGAAGATGAGGTGAAAGATTGTGGCTTTGTTATTGATCGTAAGGGAAGTGAAATTCATTGCCGAGTTTTGAAGTTGGGCTTTGATCGTGATTTGTATGTTCAGAATTCGTTGATTTTTGTGTATTCTCAGTGTGGGTCTGTGGAACTTGCCCGCTGTGTTTTCGACGAAATGACTGACAGAAGTGCTTCTTCTTGGAACATCATGTTAACAGCTTATGATCAGGTTGCCGATTTCGAATCCGCGGATTATCTGTTTCAGTCAATGCCTGAGAAGAATGTAGTTTCCTGGAATACTTTATTAGCAAGGCATGTTAGGTTGAGCAACATTGAGGCTGCAAAAATAGTCTTCCGAGAGATGCCTGTGAGGAATTCGGTTTCTTGGAATTCGATGATTGCTGGCTATGTTCAGGTTAGAGATTATGATGGAGCATTGAAGCTCTTCCGTGAAATGCAAATTGCTGAGGTGGAAGCTACTGAAGTTACGCTTATATCTATCTTGGGTGCTTGTGCTGAAACTGGTGCATTGGAGATTGGGAGGAAGATTCATGAGTCCTTGAACCTACAGCACCATAAGATTGAAGGGTATTTGGGTGTTGCCCTTGTAGATATGTATTCTAAATGTGGGAAATTGAGTTCAGCTTGGGAAGTGTTTGGTGAGCTGAAAATGAAACCTGTTGGCTGCTGGAATGCCATGATTGTGGGTTTGGGCGTCCATGGTTACTGCAATGAGGCTTTGGAATTGTTTGCGGCTATGGAAAGGCAGCTTGGTGAAGTTACACCAAACCGGATTACGTTTATTGGTGTTTTAATTGCTTGTAGCCGTAAGGGTTTGGTGGAAGAAGGACGCCGGTATTTCAATCAGATGGTTCAAGAATACAAGATTGTGCCTGATGAGAAGCATTATGGTTGCATGGTTGATCTTCTCAGCAGATGGGGATTGTTAGACGAAGCGTTCGAGATGATCAAAGCTGTGCCCTCCGGGCCAAGCTCTTTGTTGTGGAGAACCTTGTTGGGTGCTTGTAGGGTACATGGAAACGTAGAATTGGCAGAGCAAAGCTTCCAGCAGCTTGCCAAATTGGAGCCTCTAAGGGATGCAGATTATGTTTTGTTGTCAAACATCTATGCTGAAGCAGAGAGATGGGATGATGTTGAGCGATTGAGGAATGAGATGATTTGTAAGGAAGTCCCAAAAACGCTCGGCTTCAGCCATGTTGACATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

515

Amino Acids

58.24

Weight (kDa)

5.74

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10030
malus_domestica MD04G1173200.v1.1 MD12G1186600.v1.1
prunus_persica Prupe.6G292100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460711
rosa_laevigata RLG00000024986
rosa_multiflora Rmu_sc0007459.1_g000001 Rmu_sc0011069.1_g000007
rosa_roxburghii Rroxscaffold_6G00419280
rosa_rugosa Rorug03G0045400
rosa_samantha Rh3AG102900 Rh3DG108100
rosa_wichuraiana Rw3G008760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccII CGCG 1 cut(s) 563
AciI CCGC 5 cut(s) 104, 472, 561, 563, 1067
AcsI RAATTY 4 cut(s) 372, 424, 688, 703
AcuI CTGAAG 3 cut(s) 816, 1467, 1507
AcyI GRCGYC 2 cut(s) 1029, 1165
AfaI GTAC 1 cut(s) 1347
AfiI CCNNNNNNNGG 2 cut(s) 183, 241
AgsI TTSAA 6 cut(s) 391, 754, 877, 899, 1177, 1190
AjnI CCWGG 1 cut(s) 605
AjuI GAANNNNNNNTTGG 4 cut(s) 188, 220, 1068, 1100
AloI GAACNNNNNNTCC 2 cut(s) 937, 969
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 50, 137
Alw44I GTGCAC 1 cut(s) 119
AoxI GGCC 1 cut(s) 1301
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 6 cut(s) 17, 111, 653, 999, 1081, 1384
ApoI RAATTY 4 cut(s) 372, 424, 688, 703
ArsI GACNNNNNNTTYG 4 cut(s) 242, 274, 1256, 1288
Asp700I GAANNNNTTC 2 cut(s) 505, 758
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 1301
AsuC2I CCSGG 1 cut(s) 1300
AsuHPI GGTGA 5 cut(s) 93, 157, 343, 986, 1100
AsuII TTCGAA 2 cut(s) 138, 555
BaeGI GKGCMC 2 cut(s) 123, 1296
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 196, 658
Bbv12I GWGCWC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 6 cut(s) 29, 98, 640, 986, 1093, 1396
BccI CCATC 6 cut(s) 74, 218, 737, 1177, 1245, 1452
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 1 cut(s) 607
BclI TGATCA 4 cut(s) 180, 262, 538, 1281
BcnI CCSGG 1 cut(s) 1300
BcoDI GTCTC 2 cut(s) 50, 137
BfaI CTAG 2 cut(s) 107, 300
BfmI CTRYAG 1 cut(s) 881
BfuAI ACCTGC 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 1300
BisI GCNGC 7 cut(s) 18, 112, 654, 1000, 1068, 1082, 1385
BlsI GCNGC 7 cut(s) 19, 113, 655, 1001, 1069, 1083, 1386
Bme1390I CCNGG 2 cut(s) 607, 1300
BmgT120I GGNCC 1 cut(s) 1301
BmiI GGNNCC 1 cut(s) 1401
BmrFI CCNGG 2 cut(s) 607, 1300
BmsI GCATC 3 cut(s) 101, 666, 1402
BpiI GAAGAC 2 cut(s) 196, 658
Bpu10I CCTNAGC 1 cut(s) 780
Bpu14I TTCGAA 2 cut(s) 138, 555
BpuEI CTTGAG 2 cut(s) 111, 272
BpuMI CCSGG 1 cut(s) 1300
BsaHI GRCGYC 2 cut(s) 1029, 1165
BsaI GGTCTC 2 cut(s) 50, 137
BsaJI CCNNGG 4 cut(s) 22, 150, 561, 1033
BsaWI WCCGGW 1 cut(s) 1104
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 241
Bse118I RCCGGY 1 cut(s) 1167
Bse1I ACTGG 1 cut(s) 841
Bse3DI GCAATG 2 cut(s) 376, 1051
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 22, 150, 561, 1033
BseGI GGATG 3 cut(s) 62, 1417, 1468
BseLI CCNNNNNNNGG 2 cut(s) 183, 241
BseMI GCAATG 2 cut(s) 376, 1051
BseMII CTCAG 4 cut(s) 461, 579, 771, 1258
BseNI ACTGG 1 cut(s) 841
BseSI GKGCMC 2 cut(s) 123, 1296
BseXI GCAGC 6 cut(s) 29, 98, 640, 986, 1093, 1396
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 3 cut(s) 1105, 1168, 1299
BslFI GGGAC 1 cut(s) 1490
BslI CCNNNNNNNGG 2 cut(s) 183, 241
BsmAI GTCTC 2 cut(s) 50, 137
BsmFI GGGAC 1 cut(s) 1490
BsmI GAATGC 1 cut(s) 1012
BsnI GGCC 1 cut(s) 1303
Bso31I GGTCTC 2 cut(s) 50, 137
Bsp119I TTCGAA 2 cut(s) 138, 555
Bsp1286I GDGCHC 2 cut(s) 123, 1296
Bsp143I GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
Bsp19I CCATGG 3 cut(s) 22, 150, 1033
BspACI CCGC 5 cut(s) 104, 472, 561, 563, 1067
BspANI GGCC 1 cut(s) 1303
BspCNI CTCAG 4 cut(s) 460, 580, 772, 1257
BspFNI CGCG 1 cut(s) 563
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 1401
BspMI ACCTGC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 764
BspT104I TTCGAA 2 cut(s) 138, 555
BspTNI GGTCTC 2 cut(s) 50, 137
BsrDI GCAATG 2 cut(s) 376, 1051
BsrFI RCCGGY 1 cut(s) 1167
BsrI ACTGG 1 cut(s) 841
BssAI RCCGGY 1 cut(s) 1167
BssECI CCNNGG 4 cut(s) 22, 150, 561, 1033
BssMI GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
BssNI GRCGYC 2 cut(s) 1029, 1165
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 3 cut(s) 22, 150, 1033
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 3 cut(s) 53, 135, 764
BstACI GRCGYC 2 cut(s) 1029, 1165
BstBI TTCGAA 2 cut(s) 138, 555
BstC8I GCNNGC 4 cut(s) 123, 472, 718, 1389
BstDEI CTNAG 5 cut(s) 447, 588, 780, 1244, 1406
BstDSI CCRYGG 4 cut(s) 22, 150, 561, 1033
BstF5I GGATG 3 cut(s) 62, 1417, 1468
BstFNI CGCG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 7 cut(s) 183, 265, 358, 406, 541, 1240, 1284
BstMAI GTCTC 2 cut(s) 50, 137
BstMBI GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
BstMWI GCNNNNNNNGC 2 cut(s) 290, 1300
BstNI CCWGG 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 605, 1298
BstSFI CTRYAG 1 cut(s) 881
BstSLI GKGCMC 2 cut(s) 123, 1296
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 6 cut(s) 29, 98, 640, 986, 1093, 1396
BstV2I GAAGAC 2 cut(s) 196, 658
BstXI CCANNNNNNTGG 1 cut(s) 1018
BsuRI GGCC 1 cut(s) 1303
BtgI CCRYGG 4 cut(s) 22, 150, 561, 1033
BtsCI GGATG 3 cut(s) 62, 1417, 1468
BtsIMutI CAGTG 2 cut(s) 95, 455
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 4 cut(s) 123, 472, 718, 1389
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 1167
Cfr13I GGNCC 1 cut(s) 1301
Cfr42I CCGCGG 1 cut(s) 564
CseI GACGC 3 cut(s) 190, 1018, 1173
Csp6I GTAC 1 cut(s) 1346
CviQI GTAC 1 cut(s) 1346
DdeI CTNAG 5 cut(s) 447, 588, 780, 1244, 1406
DpnI GATC 7 cut(s) 182, 264, 357, 405, 540, 1239, 1283
DpnII GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
Eam1104I CTCTTC 3 cut(s) 53, 135, 764
EarI CTCTTC 3 cut(s) 53, 135, 764
Eco130I CCWWGG 3 cut(s) 22, 150, 1033
Eco31I GGTCTC 2 cut(s) 50, 137
Eco57I CTGAAG 3 cut(s) 816, 1467, 1507
EcoRI GAATTC 3 cut(s) 424, 688, 703
EcoRII CCWGG 1 cut(s) 605
EcoT14I CCWWGG 3 cut(s) 22, 150, 1033
ErhI CCWWGG 3 cut(s) 22, 150, 1033
FalI AAGNNNNNCTT 6 cut(s) 383, 415, 493, 525, 789, 821
FaqI GGGAC 1 cut(s) 1490
FauI CCCGC 1 cut(s) 479
FauNDI CATATG 1 cut(s) 237
FbaI TGATCA 4 cut(s) 180, 262, 538, 1281
Fnu4HI GCNGC 7 cut(s) 18, 112, 654, 1000, 1068, 1082, 1385
FokI GGATG 3 cut(s) 49, 1424, 1475
Fsp4HI GCNGC 7 cut(s) 18, 112, 654, 1000, 1068, 1082, 1385
FspBI CTAG 2 cut(s) 107, 300
GlaI GCGC 1 cut(s) 285
GluI GCNGC 7 cut(s) 18, 112, 654, 1000, 1068, 1082, 1385
HaeIII GGCC 1 cut(s) 1303
HapII CCGG 3 cut(s) 1105, 1168, 1299
HgaI GACGC 3 cut(s) 190, 1018, 1173
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 2 cut(s) 1029, 1165
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 2 cut(s) 528, 1534
HindII GTYRAC 2 cut(s) 528, 1534
HindIII AAGCTT 1 cut(s) 1375
HinfI GANTC 3 cut(s) 557, 862, 869
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 3 cut(s) 1105, 1168, 1299
HphI GGTGA 5 cut(s) 93, 157, 343, 986, 1100
Hpy166II GTNNAC 3 cut(s) 121, 528, 1534
Hpy188I TCNGA 4 cut(s) 262, 423, 671, 1182
Hpy188III TCNNGA 5 cut(s) 34, 407, 866, 1190, 1276
Hpy8I GTNNAC 3 cut(s) 121, 528, 1534
Hpy99I CGWCG 2 cut(s) 74, 488
HpyAV CCTTC 3 cut(s) 172, 893, 1154
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 3 cut(s) 313, 1112, 1356
HpyCH4V TGCA 9 cut(s) 121, 171, 241, 656, 772, 842, 1044, 1230, 1415
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 1300
HpyF3I CTNAG 5 cut(s) 447, 588, 780, 1244, 1406
HpySE526I ACGT 3 cut(s) 313, 1112, 1356
Hsp92I GRCGYC 2 cut(s) 1029, 1165
HspAI GCGC 1 cut(s) 284
Ksp22I TGATCA 4 cut(s) 180, 262, 538, 1281
KspAI GTTAAC 1 cut(s) 528
KspI CCGCGG 1 cut(s) 564
Kzo9I GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
LguI GCTCTTC 1 cut(s) 764
LmnI GCTCC 2 cut(s) 746, 1399
Lsp1109I GCAGC 6 cut(s) 29, 98, 640, 986, 1093, 1396
LweI GCATC 3 cut(s) 101, 666, 1402
MaeI CTAG 2 cut(s) 107, 300
MaeII ACGT 3 cut(s) 313, 1112, 1356
MaeIII GTNAC 4 cut(s) 99, 799, 1037, 1093
MalI GATC 7 cut(s) 182, 264, 357, 405, 540, 1239, 1283
MboI GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
MhlI GDGCHC 2 cut(s) 123, 1296
MlyI GAGTC 1 cut(s) 878
MroXI GAANNNNTTC 2 cut(s) 505, 758
MseI TTAA 2 cut(s) 527, 1127
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 2 cut(s) 474, 563
MspI CCGG 3 cut(s) 1105, 1168, 1299
MspR9I CCNGG 2 cut(s) 607, 1300
Mva1269I GAATGC 1 cut(s) 1012
MvaI CCWGG 1 cut(s) 607
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 2 cut(s) 290, 1300
NciI CCSGG 1 cut(s) 1300
NcoI CCATGG 3 cut(s) 22, 150, 1033
NdeI CATATG 1 cut(s) 237
NdeII GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
NlaIV GGNNCC 1 cut(s) 1401
NmeAIII GCCGAG 2 cut(s) 407, 1497
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 1 cut(s) 632
NspV TTCGAA 2 cut(s) 138, 555
PagI TCATGA 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 1272
PctI GAATGC 1 cut(s) 1012
PdmI GAANNNNTTC 2 cut(s) 505, 758
PfeI GAWTC 2 cut(s) 557, 862
PfoI TCCNGGA 1 cut(s) 605
PkrI GCNGC 7 cut(s) 19, 113, 655, 1001, 1069, 1083, 1386
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 1 cut(s) 1401
PspPI GGNCC 1 cut(s) 1301
RsaI GTAC 1 cut(s) 1347
RsaNI GTAC 1 cut(s) 1346
RseI CAYNNNNRTG 1 cut(s) 1016
SacII CCGCGG 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 764
SaqAI TTAA 2 cut(s) 527, 1127
SatI GCNGC 7 cut(s) 18, 112, 654, 1000, 1068, 1082, 1385
Sau3AI GATC 7 cut(s) 180, 262, 355, 403, 538, 1237, 1281
Sau96I GGNCC 1 cut(s) 1301
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 2 cut(s) 607, 1300
SduI GDGCHC 2 cut(s) 123, 1296
SfaNI GCATC 3 cut(s) 101, 666, 1402
SfcI CTRYAG 1 cut(s) 881
Sfr303I CCGCGG 1 cut(s) 564
SfuI TTCGAA 2 cut(s) 138, 555
SgrBI CCGCGG 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 2 cut(s) 126, 287
SmoI CTYRAG 2 cut(s) 126, 287
SsiI CCGC 5 cut(s) 104, 472, 561, 563, 1067
SspMI CTAG 2 cut(s) 107, 300
StyD4I CCNGG 2 cut(s) 605, 1298
StyI CCWWGG 3 cut(s) 22, 150, 1033
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 3 cut(s) 316, 1115, 1359
TaqI TCGA 6 cut(s) 12, 138, 483, 555, 707, 1275
TauI GCSGC 1 cut(s) 1070
TfiI GAWTC 2 cut(s) 557, 862
Tru1I TTAA 2 cut(s) 527, 1127
Tru9I TTAA 2 cut(s) 527, 1127
TscAI CASTG 2 cut(s) 102, 455
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 6 cut(s) 17, 111, 653, 999, 1081, 1384
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 5 cut(s) 17, 323, 365, 854, 1001
TspGWI ACGGA 1 cut(s) 752
TspRI CASTG 2 cut(s) 102, 455
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 4 cut(s) 372, 424, 688, 703
XceI RCATGY 1 cut(s) 632
XmnI GAANNNNTTC 2 cut(s) 505, 758
XspI CTAG 2 cut(s) 107, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.