Rorug03G0045400
ERF Family

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010689
Physical Location & Seq
Forward (+)
3512273 .. 3514467
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0045400.1

Sequence Viewer

Length: 609 bp
ATGGCCAACTATAACGAAGCGGAATTCGTCGCTTATCTCCCCGAAGATCGAGCCAAAAATTTGATTGAACATTGGGACAAGGTGGAATCGTCTCTACAGAAGCTTGACATTGCATGCCATTTCATTGAGGGTCAGTTTTCAAGCAAGGGTAAACTGATCACTACCATGAGAGCATTCCCAACCAATAAGGCTTCAGAAGATTCTATTGCAAGGGCTAAGAAGCTTGTTGAACTCTTGTTTCTAACCTGTCTTCCCGTCCCTGTGGCAGTACAAGTAGCAATCCATGACAGGCCCTGTAAAGTCATAAAGCTCGGGTACTCGAATGGTGGGCTTCGCGCCCGATTTAAGATCGACAAGGAGAAATTTGACAAACGTAAGAAGCGTTTTAAGAACCACATGAAGAAAATCGCAGACCTGACAGAAACTAATCTCTACCTCAGCGGATGTAATCTTGCTGTTACCGGTAGATCTGCCCTTGGTTCATCTGTCGGGCTTTTGATGGTCAAGAGGATCGCTTTTGCACTGTTTGTTGAGAATATGATGCCTGAAAACGTCGTCCAGAGGATTGAGAAGAATAAGAAAGCGCTGTTGGATGCAGGAAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

9.65

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010689)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01850 AT5G01850
fragaria_vesca FvH4_6g10040
malus_domestica MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica Prupe.6G292000_v2.0.a1
pyrus_communis pycom04g15310
rosa_chinensis RchiOBHm_Chr3g0460721
rosa_laevigata RLG00000024985
rosa_multiflora Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii Rroxscaffold_6G00419270
rosa_rugosa Rorug03G0045400 Rorug03G0045500
rosa_samantha Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana Rw3G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 20, 441
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 23, 58, 362
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 2 cut(s) 270, 317
AfeI AGCGCT 1 cut(s) 585
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 3 cut(s) 68, 141, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 3 cut(s) 103, 223, 310
AluI AGCT 3 cut(s) 103, 223, 310
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 311
Aor51HI AGCGCT 1 cut(s) 585
AoxI GGCC 2 cut(s) 3, 290
ApoI RAATTY 3 cut(s) 23, 58, 362
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 2 cut(s) 338, 586
AspS9I GGNCC 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 493
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 587
BglII AGATCT 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 291
BmsI GCATC 2 cut(s) 531, 583
BpiI GAAGAC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 449, 598
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 5, 292
BshTI ACCGGT 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 2 cut(s) 89, 242
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 89, 242
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 2 cut(s) 5, 292
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 5 cut(s) 46, 156, 348, 467, 510
BspACI CCGC 2 cut(s) 20, 441
BspANI GGCC 2 cut(s) 5, 292
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 1 cut(s) 336
BspPI GGATC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 5 cut(s) 46, 156, 348, 467, 510
BssT1I CCWWGG 1 cut(s) 475
Bst4CI ACNGT 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 216, 437
BstF5I GGATG 2 cut(s) 449, 598
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 2 cut(s) 338, 586
BstKTI GATC 5 cut(s) 49, 159, 351, 470, 513
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 5 cut(s) 46, 156, 348, 467, 510
BstNSI RCATGY 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 95
BstUI CGCG 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 5, 292
BtsCI GGATG 2 cut(s) 449, 598
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 338, 586
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 269, 316
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 4 cut(s) 114, 166, 284, 397
CviQI GTAC 2 cut(s) 269, 316
DdeI CTNAG 2 cut(s) 216, 437
DpnI GATC 5 cut(s) 48, 158, 350, 469, 512
DpnII GATC 5 cut(s) 46, 156, 348, 467, 510
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 475
Eco47III AGCGCT 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 4 cut(s) 117, 169, 287, 400
FaiI YATR 7 cut(s) 12, 115, 167, 285, 305, 398, 539
FaqI GGGAC 2 cut(s) 89, 242
FatI CATG 4 cut(s) 113, 165, 283, 396
FbaI TGATCA 1 cut(s) 156
FokI GGATG 2 cut(s) 456, 605
GlaI GCGC 2 cut(s) 337, 585
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 2 cut(s) 5, 292
HapII CCGG 1 cut(s) 462
HhaI GCGC 2 cut(s) 338, 586
Hin1II CATG 4 cut(s) 117, 169, 287, 400
Hin6I GCGC 2 cut(s) 336, 584
HinP1I GCGC 2 cut(s) 336, 584
HindIII AAGCTT 2 cut(s) 101, 221
HinfI GANTC 2 cut(s) 86, 200
HpaII CCGG 1 cut(s) 462
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 505, 559
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 32, 557
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 2 cut(s) 373, 552
HpyCH4V TGCA 4 cut(s) 113, 209, 521, 596
HpyF3I CTNAG 2 cut(s) 216, 437
HpySE526I ACGT 2 cut(s) 373, 552
Hsp92II CATG 4 cut(s) 117, 169, 287, 400
HspAI GCGC 2 cut(s) 336, 584
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 5 cut(s) 46, 156, 348, 467, 510
LpnPI CCDG 9 cut(s) 259, 273, 274, 307, 428, 475, 558, 572, 582
LweI GCATC 2 cut(s) 531, 583
MaeII ACGT 2 cut(s) 373, 552
MaeIII GTNAC 1 cut(s) 457
MalI GATC 5 cut(s) 48, 158, 350, 469, 512
MboI GATC 5 cut(s) 46, 156, 348, 467, 510
MboII GAAGA 5 cut(s) 56, 209, 242, 412, 583
MflI RGATCY 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 23, 58, 362
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 4 cut(s) 121, 446, 501, 555
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 345, 387
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 1 cut(s) 336
NdeII GATC 5 cut(s) 46, 156, 348, 467, 510
NlaIII CATG 4 cut(s) 117, 169, 287, 400
NspI RCATGY 1 cut(s) 117
PaeI GCATGC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 86, 200
PinAI ACCGGT 1 cut(s) 461
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 2 cut(s) 270, 317
RsaNI GTAC 2 cut(s) 269, 316
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 345, 387
Sau3AI GATC 5 cut(s) 46, 156, 348, 467, 510
Sau96I GGNCC 1 cut(s) 291
SetI ASST 9 cut(s) 84, 105, 225, 248, 312, 376, 417, 438, 555
SfaNI GCATC 2 cut(s) 531, 583
SfcI CTRYAG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 164
SphI GCATGC 1 cut(s) 117
Sse9I AATT 3 cut(s) 23, 58, 362
SsiI CCGC 2 cut(s) 20, 441
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 2 cut(s) 376, 555
TaqI TCGA 3 cut(s) 49, 320, 351
TasI AATT 3 cut(s) 23, 58, 362
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 2 cut(s) 86, 200
Tru1I TTAA 2 cut(s) 345, 387
Tru9I TTAA 2 cut(s) 345, 387
TscAI CASTG 1 cut(s) 528
TspDTI ATGAA 3 cut(s) 112, 413, 471
TspRI CASTG 1 cut(s) 528
XapI RAATTY 3 cut(s) 23, 58, 362
XceI RCATGY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.