Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Forward (+)

40767859 .. 40771914

Gene Structure 4056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGTTGTAGTGTGAACGGTGGAGGAAGACAGCAGAGGAATTCGGCTTCGGTCTCACAGAACGGTTCAATTACGGCGCAGCAGCTGGCAATCGACGAGAGCCTGCTGGTTGATCCCAAGTTGTTGTTTATTGGGGCGAAAATTGGTGAGGGAGCTCATGGGAAAGTTTACGAAGGAAGGTACGGTAGTCGAATTGTGGCTATCAAAGTTCTCAATCCTGGAAGCACTTCTGAAGAAAGAGCTCAACTTGAGAATCGATTTGCCCGTGAAGTTAATATGATGACACGAGTGAAGCATGAAAATCTTGTGAAGTTTATCGGGGCTTGTAAGGATCCTCTAATGGTGATAGTTACTGAGCTATTACCTGGAATGTCACTCCGGAAGTACCTGATTAGTATTCGTCCCAATCAATTAGAACTTCATGTGGCCATTAAATATGCTCTTGACATCGCTCATGCAATGGAATGTTTACATGCCAATGGCATTATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAATCTGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACTGGGACTTACCGTTGGATGGCTCCTGAGCTATATAGCACTGTCACATTACGGCAAGGAGAGAAGAAGCATTACAATAACAGAGTTGATGTGTATAGCTTTGGGATCGTCTTATGGGAATTGTTGACCAACCGCATGCCCTTTGAAGGCATGTCTAATTTGCAGGCTGCCTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCGACTTCCAGACGATGTCTCCCCTGATCTTGCCTTCATCATCCAGTCATGTTGGGTTGAGGACCCCAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAACTCTTTCCTCTTCAAACTCTCACCCCCTCACCACCCCTACCGGACAATGACAGCAACGAAGCAGAAGCAAGTAACGGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

331

Amino Acids

37.24

Weight (kDa)

9.06

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	45 - 303	4.6e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	46 - 301	4.1e-55	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	988
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	2 cut(s)	736, 901
AclWI	GGATC	4 cut(s)	107, 326, 339, 716
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	182, 386
AfiI	CCNNNNNNNGG	3 cut(s)	622, 749, 876
AgsI	TTSAA	4 cut(s)	69, 749, 790, 925
AjnI	CCWGG	2 cut(s)	217, 364
AluBI	AGCT	7 cut(s)	85, 155, 242, 358, 547, 634, 702
AluI	AGCT	7 cut(s)	85, 155, 242, 358, 547, 634, 702
Alw21I	GWGCWC	2 cut(s)	157, 244
Alw26I	GTCTC	2 cut(s)	58, 826
AlwI	GGATC	4 cut(s)	107, 326, 339, 716
AlwNI	CAGNNNCTG	2 cut(s)	85, 605
Aor13HI	TCCGGA	1 cut(s)	378
AoxI	GGCC	3 cut(s)	426, 800, 878
ApeKI	GCWGC	5 cut(s)	79, 82, 770, 779, 782
ApoI	RAATTY	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	865
AsuHPI	GGTGA	4 cut(s)	158, 355, 924, 932
AvaII	GGWCC	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BalI	TGGCCA	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	988
BanII	GRGCYC	2 cut(s)	157, 244
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	2 cut(s)	157, 244
BbvI	GCAGC	5 cut(s)	91, 94, 757, 766, 769
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	3 cut(s)	90, 540, 671
BciT130I	CCWGG	2 cut(s)	219, 366
BcoDI	GTCTC	2 cut(s)	58, 826
BfmI	CTRYAG	1 cut(s)	597
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	5 cut(s)	80, 83, 771, 780, 783
BlsI	GCNGC	5 cut(s)	81, 84, 772, 781, 784
Bme1390I	CCNGG	2 cut(s)	219, 366
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	4 cut(s)	333, 627, 867, 990
BmrFI	CCNGG	2 cut(s)	219, 366
BmrI	ACTGGG	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	58
BsaWI	WCCGGW	2 cut(s)	378, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	622, 749, 876
Bse1I	ACTGG	2 cut(s)	610, 847
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	219, 366
BseCI	ATCGAT	1 cut(s)	256
BseGI	GGATG	3 cut(s)	627, 843, 897
BseLI	CCNNNNNNNGG	3 cut(s)	622, 749, 876
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	345, 576, 621
BseNI	ACTGG	2 cut(s)	610, 847
BseXI	GCAGC	5 cut(s)	91, 94, 757, 766, 769
BshFI	GGCC	3 cut(s)	428, 802, 880
BshNI	GGYRCC	1 cut(s)	988
BshVI	ATCGAT	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	157, 244
BsiSI	CCGG	2 cut(s)	379, 952
BslFI	GGGAC	2 cut(s)	387, 622
BslI	CCNNNNNNNGG	3 cut(s)	622, 749, 876
BsmAI	GTCTC	2 cut(s)	58, 826
BsmFI	GGGAC	2 cut(s)	387, 622
BsnI	GGCC	3 cut(s)	428, 802, 880
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	157, 244
Bsp13I	TCCGGA	1 cut(s)	378
Bsp143I	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
BspACI	CCGC	2 cut(s)	736, 901
BspANI	GGCC	3 cut(s)	428, 802, 880
BspCNI	CTCAG	3 cut(s)	346, 577, 622
BspDI	ATCGAT	1 cut(s)	256
BspEI	TCCGGA	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	333, 627, 867, 990
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	4 cut(s)	107, 326, 339, 716
BspT107I	GGYRCC	1 cut(s)	988
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	610, 847
BssMI	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	219, 366
Bst4CI	ACNGT	7 cut(s)	20, 65, 185, 580, 617, 646, 988
Bst6I	CTCTTC	1 cut(s)	926
BstC8I	GCNNGC	6 cut(s)	87, 104, 549, 740, 768, 905
BstDEI	CTNAG	4 cut(s)	354, 585, 630, 875
BstF5I	GGATG	3 cut(s)	627, 843, 897
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	6 cut(s)	115, 334, 499, 711, 832, 897
BstMAI	GTCTC	2 cut(s)	58, 826
BstMBI	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	776, 779, 799
BstNI	CCWGG	2 cut(s)	219, 366
BstNSI	RCATGY	4 cut(s)	476, 742, 757, 907
BstSCI	CCNGG	2 cut(s)	217, 364
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	91, 94, 757, 766, 769
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	331, 496
BstYI	RGATCY	2 cut(s)	331, 496
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	428, 802, 880
BsuTUI	ATCGAT	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	627, 843, 897
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	6 cut(s)	87, 104, 549, 740, 768, 905
CaiI	CAGNNNCTG	2 cut(s)	85, 605
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	865
ClaI	ATCGAT	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	181, 385
CviQI	GTAC	2 cut(s)	181, 385
DdeI	CTNAG	4 cut(s)	354, 585, 630, 875
DpnI	GATC	6 cut(s)	114, 333, 498, 710, 831, 896
DpnII	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	926
EarI	CTCTTC	1 cut(s)	926
Ecl136II	GAGCTC	2 cut(s)	155, 242
Eco147I	AGGCCT	2 cut(s)	802, 880
Eco24I	GRGCYC	2 cut(s)	157, 244
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	2 cut(s)	155, 242
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	155, 242
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	217, 364
EcoT38I	GRGCYC	2 cut(s)	157, 244
FaqI	GGGAC	2 cut(s)	387, 622
Fnu4HI	GCNGC	5 cut(s)	80, 83, 771, 780, 783
FokI	GGATG	3 cut(s)	634, 830, 884
FriOI	GRGCYC	2 cut(s)	157, 244
Fsp4HI	GCNGC	5 cut(s)	80, 83, 771, 780, 783
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	80, 83, 771, 780, 783
HaeIII	GGCC	3 cut(s)	428, 802, 880
HapII	CCGG	2 cut(s)	379, 952
HhaI	GCGC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	379, 952
HphI	GGTGA	4 cut(s)	158, 355, 924, 932
Hpy166II	GTNNAC	4 cut(s)	16, 169, 470, 729
Hpy188I	TCNGA	2 cut(s)	232, 534
Hpy188III	TCNNGA	4 cut(s)	379, 443, 629, 812
Hpy8I	GTNNAC	4 cut(s)	16, 169, 470, 729
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	167, 171, 743, 847
HpyCH4III	ACNGT	7 cut(s)	20, 65, 185, 580, 617, 646, 988
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	5 cut(s)	458, 551, 566, 599, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	776, 779, 799
HpyF3I	CTNAG	4 cut(s)	354, 585, 630, 875
HpySE526I	ACGT	1 cut(s)	884
HspAI	GCGC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
LmnI	GCTCC	2 cut(s)	152, 631
Lsp1109I	GCAGC	5 cut(s)	91, 94, 757, 766, 769
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	5 cut(s)	349, 372, 580, 646, 982
MalI	GATC	6 cut(s)	114, 333, 498, 710, 831, 896
MboI	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
MboII	GAAGA	5 cut(s)	39, 245, 584, 679, 913
MflI	RGATCY	2 cut(s)	331, 496
MhlI	GDGCHC	2 cut(s)	157, 244
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	7 cut(s)	40, 69, 141, 192, 410, 722, 760
MluNI	TGGCCA	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	9 cut(s)	17, 30, 142, 345, 792, 813, 856, 929, 948
Mox20I	TGGCCA	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	2 cut(s)	273, 432
MslI	CAYNNNNRTG	2 cut(s)	477, 902
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	379, 952
MspR9I	CCNGG	2 cut(s)	219, 366
MvaI	CCWGG	2 cut(s)	219, 366
MwoI	GCNNNNNNNGC	3 cut(s)	776, 779, 799
NdeII	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
NlaIV	GGNNCC	4 cut(s)	333, 627, 867, 990
NmuCI	GTSAC	3 cut(s)	372, 580, 646
NspI	RCATGY	4 cut(s)	476, 742, 757, 907
PaeI	GCATGC	2 cut(s)	742, 907
PceI	AGGCCT	2 cut(s)	802, 880
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	818
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	81, 84, 772, 781, 784
PpuMI	RGGWCCY	1 cut(s)	865
Psp124BI	GAGCTC	2 cut(s)	157, 244
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	2 cut(s)	217, 364
PspGI	CCWGG	2 cut(s)	217, 364
PspN4I	GGNNCC	4 cut(s)	333, 627, 867, 990
PspPI	GGNCC	1 cut(s)	865
PspPPI	RGGWCCY	1 cut(s)	865
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	2 cut(s)	85, 605
PsuI	RGATCY	2 cut(s)	331, 496
PsyI	GACNNNGTC	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	182, 386
RsaNI	GTAC	2 cut(s)	181, 385
RseI	CAYNNNNRTG	2 cut(s)	477, 902
SacI	GAGCTC	2 cut(s)	157, 244
SaqAI	TTAA	2 cut(s)	273, 432
SatI	GCNGC	5 cut(s)	80, 83, 771, 780, 783
Sau3AI	GATC	6 cut(s)	112, 331, 496, 708, 829, 894
Sau96I	GGNCC	1 cut(s)	865
ScrFI	CCNGG	2 cut(s)	219, 366
SduI	GDGCHC	2 cut(s)	157, 244
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	2 cut(s)	477, 902
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SphI	GCATGC	2 cut(s)	742, 907
Sse9I	AATT	7 cut(s)	40, 69, 141, 192, 410, 722, 760
SseBI	AGGCCT	2 cut(s)	802, 880
SsiI	CCGC	2 cut(s)	736, 901
SstI	GAGCTC	2 cut(s)	157, 244
StuI	AGGCCT	2 cut(s)	802, 880
StyD4I	CCNGG	2 cut(s)	217, 364
TaaI	ACNGT	7 cut(s)	20, 65, 185, 580, 617, 646, 988
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	4 cut(s)	93, 190, 256, 805
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	7 cut(s)	40, 69, 141, 192, 410, 722, 760
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	273, 432
Tru9I	TTAA	2 cut(s)	273, 432
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	372, 580, 646
TseI	GCWGC	5 cut(s)	79, 82, 770, 779, 782
Tsp45I	GTSAC	3 cut(s)	372, 580, 646
TspDTI	ATGAA	3 cut(s)	312, 410, 829
TspRI	CASTG	1 cut(s)	649
Tth111I	GACNNNGTC	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	4 cut(s)	476, 742, 757, 907
XmnI	GAANNNNTTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.