Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Forward (+)

26468723 .. 26473002

Gene Structure 4280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1173100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGTTGCAGCGTGAGGAGCGGCGGAAGAGAAGAAAGGGAGCGCGAGCAAGCGGTTTTGAGGAAGTCTGTGGATGTCGAGCCCAACTCGGGCTCGCAGAATGGTTTGATTGCTGCCCAGCAGCTGACAATTGACGAGAATTTGCTGGTGGACCCGAAATTGTTGTTTATCGGGGCGAAAATTGGTGAGGGAGCACATGGCAAGGTTTATGAAGGAAGATACGGTGATCGAATTGTTGCTGTCAAAGTCCTCCATCGTGGGAGCACTACCGAAGAAAGAGCTGCGCTTGAGAGTCGTTTTGCCCGTGAAGTTAATATGATGTCCCGAGTAAAACACGAAAATCTTGTTAAGTTTATTGGAGCTTGTAAGGAGCCGCTTATGGTGATAGTTACTGAGCTATTACCTGGGATGTCACTTAGGAAGTACCTGATGAGTATTCGTCCAAATCCATTAGAACTCCACGTAGCCATTAAATTTTCTCTGGACATCGCTCACGCTATGGAATGTTTACATGCCAATGGGATCATACATAGAGATCTAAAGCCGGACAATTTGTTGCTTACGGCGAATCAGAAACATGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACGGTTACAGAGATGATGACAGCAGAAACTGGGACTTACCGCTGGATGGCTCCTGAGCTATATAGCACGGTAACTTTACGCCAGGGAGAGAAGAAGCATTACAATAACAAGGTCGATGTATATAGCTTTGGGATTGTCTTATGGGAATTATTGACTAACCGCATGCCCTTTGAAGGCATGTCCAATTTGCAGGCCGCTTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCTACTTCCGGAGGACATATCGCCCGATCTTGCATTTATCATTCAGTCATGTTGGGTTGAGGACCCTAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAATTCGTTCCTCTTCAAACTCTCACCACCCTCACCGCCTATACCAGACACTGACACGAAAGAAGCAGCCGCAAGTAACGGTCCCATGACTGAATTATCTGCCCGGACAAGAGGGAAGTTCGCTTTCCTCAGGCAACTGTTCAATGCCAAGAGGACCAAGAGCTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.83

Weight (kDa)

8.75

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	58 - 316	5.8e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	59 - 314	1.7e-54	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	850
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	139, 473
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	89, 661, 788
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	4 cut(s)	788, 829, 964, 1090
AjnI	CCWGG	2 cut(s)	403, 696
AluBI	AGCT	8 cut(s)	124, 281, 362, 397, 586, 673, 741, 1110
AluI	AGCT	8 cut(s)	124, 281, 362, 397, 586, 673, 741, 1110
Alw21I	GWGCWC	3 cut(s)	196, 266, 1112
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	3 cut(s)	124, 644, 998
Ama87I	CYCGRG	2 cut(s)	88, 324
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	3 cut(s)	807, 839, 917
ApeKI	GCWGC	7 cut(s)	9, 113, 121, 281, 818, 821, 1013
ApoI	RAATTY	2 cut(s)	139, 473
AspLEI	GCGC	2 cut(s)	45, 286
AspS9I	GGNCC	4 cut(s)	151, 904, 1028, 1101
AsuC2I	CCSGG	1 cut(s)	1051
AsuHPI	GGTGA	5 cut(s)	197, 236, 394, 963, 972
AvaI	CYCGRG	2 cut(s)	88, 324
AvaII	GGWCC	4 cut(s)	151, 904, 1028, 1101
AxyI	CCTNAGG	1 cut(s)	1076
BanII	GRGCYC	3 cut(s)	84, 95, 1112
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
Bbv12I	GWGCWC	3 cut(s)	196, 266, 1112
BbvI	GCAGC	7 cut(s)	21, 100, 133, 268, 805, 808, 1025
BccI	CCATC	2 cut(s)	261, 655
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	2 cut(s)	405, 698
BcnI	CCSGG	1 cut(s)	1051
BglII	AGATCT	1 cut(s)	535
Bme1390I	CCNGG	3 cut(s)	405, 698, 1051
Bme18I	GGWCC	4 cut(s)	151, 904, 1028, 1101
BmeT110I	CYCGRG	2 cut(s)	88, 324
BmgT120I	GGNCC	4 cut(s)	151, 904, 1028, 1101
BmiI	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
BmrFI	CCNGG	3 cut(s)	405, 698, 1051
BmrI	ACTGGG	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	1051
BsaAI	YACGTR	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	404, 697
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 661, 788
Bse1I	ACTGG	1 cut(s)	649
Bse21I	CCTNAGG	1 cut(s)	1076
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	2 cut(s)	405, 698
BseDI	CCNNGG	2 cut(s)	404, 697
BseGI	GGATG	4 cut(s)	79, 414, 666, 936
BseLI	CCNNNNNNNGG	3 cut(s)	89, 661, 788
BseMII	CTCAG	3 cut(s)	384, 660, 1090
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	7 cut(s)	21, 100, 133, 268, 805, 808, 1025
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	809, 841, 919
BsiHKAI	GWGCWC	3 cut(s)	196, 266, 1112
BsiHKCI	CYCGRG	2 cut(s)	88, 324
BsiSI	CCGG	3 cut(s)	545, 851, 1051
BslFI	GGGAC	3 cut(s)	307, 661, 1014
BslI	CCNNNNNNNGG	3 cut(s)	89, 661, 788
BsmFI	GGGAC	3 cut(s)	307, 661, 1014
BsnI	GGCC	3 cut(s)	809, 841, 919
BsoBI	CYCGRG	2 cut(s)	88, 324
Bsp1286I	GDGCHC	5 cut(s)	84, 95, 196, 266, 1112
Bsp13I	TCCGGA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	226, 522, 535, 868, 933
BspANI	GGCC	3 cut(s)	809, 841, 919
BspCNI	CTCAG	3 cut(s)	385, 661, 1089
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
BspPI	GGATC	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	404, 697
BssMI	GATC	5 cut(s)	226, 522, 535, 868, 933
Bst2UI	CCWGG	2 cut(s)	405, 698
Bst4CI	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
Bst6I	CTCTTC	2 cut(s)	22, 965
BstBAI	YACGTR	1 cut(s)	463
BstC8I	GCNNGC	7 cut(s)	47, 51, 95, 588, 779, 807, 944
BstDEI	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
BstF5I	GGATG	4 cut(s)	79, 414, 666, 936
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	45, 286
BstKTI	GATC	5 cut(s)	229, 525, 538, 871, 936
BstMBI	GATC	5 cut(s)	226, 522, 535, 868, 933
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
BstNI	CCWGG	2 cut(s)	405, 698
BstNSI	RCATGY	5 cut(s)	515, 581, 781, 796, 946
BstSCI	CCNGG	3 cut(s)	403, 696, 1049
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	7 cut(s)	21, 100, 133, 268, 805, 808, 1025
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	1076
BsuRI	GGCC	3 cut(s)	809, 841, 919
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	4 cut(s)	79, 414, 666, 936
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	7 cut(s)	47, 51, 95, 588, 779, 807, 944
CaiI	CAGNNNCTG	3 cut(s)	124, 644, 998
CfoI	GCGC	2 cut(s)	45, 286
Cfr13I	GGNCC	4 cut(s)	151, 904, 1028, 1101
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	8 cut(s)	197, 512, 578, 778, 793, 891, 943, 1033
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
DpnI	GATC	5 cut(s)	228, 524, 537, 870, 935
DpnII	GATC	5 cut(s)	226, 522, 535, 868, 933
Eam1104I	CTCTTC	2 cut(s)	22, 965
EarI	CTCTTC	2 cut(s)	22, 965
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	1110
Eco147I	AGGCCT	2 cut(s)	841, 919
Eco24I	GRGCYC	3 cut(s)	84, 95, 1112
Eco47I	GGWCC	4 cut(s)	151, 904, 1028, 1101
Eco53kI	GAGCTC	1 cut(s)	1110
Eco81I	CCTNAGG	1 cut(s)	1076
Eco88I	CYCGRG	2 cut(s)	88, 324
EcoICRI	GAGCTC	1 cut(s)	1110
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	403, 696
EcoT38I	GRGCYC	3 cut(s)	84, 95, 1112
FaeI	CATG	8 cut(s)	200, 515, 581, 781, 796, 894, 946, 1036
FaqI	GGGAC	3 cut(s)	307, 661, 1014
FatI	CATG	8 cut(s)	196, 511, 577, 777, 792, 890, 942, 1032
FokI	GGATG	4 cut(s)	86, 421, 673, 923
FriOI	GRGCYC	3 cut(s)	84, 95, 1112
GlaI	GCGC	2 cut(s)	44, 285
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	809, 841, 919
HapII	CCGG	3 cut(s)	545, 851, 1051
HhaI	GCGC	2 cut(s)	45, 286
Hin1II	CATG	8 cut(s)	200, 515, 581, 781, 796, 894, 946, 1036
Hin6I	GCGC	2 cut(s)	43, 284
HinP1I	GCGC	2 cut(s)	43, 284
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	292, 568
HpaII	CCGG	3 cut(s)	545, 851, 1051
HphI	GGTGA	5 cut(s)	197, 236, 394, 963, 972
Hpy166II	GTNNAC	2 cut(s)	151, 509
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	4 cut(s)	324, 482, 668, 851
Hpy8I	GTNNAC	2 cut(s)	151, 509
HpyAV	CCTTC	2 cut(s)	206, 782
HpyCH4III	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
HpyCH4IV	ACGT	2 cut(s)	462, 923
HpyCH4V	TGCA	5 cut(s)	9, 590, 605, 805, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
HpyF3I	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
HpySE526I	ACGT	2 cut(s)	462, 923
Hsp92II	CATG	8 cut(s)	200, 515, 581, 781, 796, 894, 946, 1036
HspAI	GCGC	2 cut(s)	43, 284
Kpn2I	TCCGGA	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	226, 522, 535, 868, 933
LmnI	GCTCC	7 cut(s)	18, 40, 191, 261, 359, 370, 670
Lsp1109I	GCAGC	7 cut(s)	21, 100, 133, 268, 805, 808, 1025
MaeII	ACGT	2 cut(s)	462, 923
MaeIII	GTNAC	5 cut(s)	388, 411, 619, 685, 1022
MalI	GATC	5 cut(s)	228, 524, 537, 870, 935
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	5 cut(s)	226, 522, 535, 868, 933
MboII	GAAGA	7 cut(s)	39, 44, 228, 284, 623, 718, 952
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	5 cut(s)	84, 95, 196, 266, 1112
MlyI	GAGTC	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	3 cut(s)	312, 348, 471
MslI	CAYNNNNRTG	2 cut(s)	516, 941
MspA1I	CMGCKG	2 cut(s)	124, 657
MspI	CCGG	3 cut(s)	545, 851, 1051
MspR9I	CCNGG	3 cut(s)	405, 698, 1051
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	405, 698
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
NciI	CCSGG	1 cut(s)	1051
NdeII	GATC	5 cut(s)	226, 522, 535, 868, 933
NlaIII	CATG	8 cut(s)	200, 515, 581, 781, 796, 894, 946, 1036
NlaIV	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
NmuCI	GTSAC	1 cut(s)	411
NspI	RCATGY	5 cut(s)	515, 581, 781, 796, 946
PaeI	GCATGC	2 cut(s)	781, 946
PceI	AGGCCT	2 cut(s)	841, 919
PciI	ACATGT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	904
PscI	ACATGT	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	1112
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	2 cut(s)	403, 696
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	403, 696
PspN4I	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
PspPI	GGNCC	4 cut(s)	151, 904, 1028, 1101
PspPPI	RGGWCCY	1 cut(s)	904
PstNI	CAGNNNCTG	3 cut(s)	124, 644, 998
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	516, 941
SacI	GAGCTC	1 cut(s)	1112
SaqAI	TTAA	3 cut(s)	312, 348, 471
Sau3AI	GATC	5 cut(s)	226, 522, 535, 868, 933
Sau96I	GGNCC	4 cut(s)	151, 904, 1028, 1101
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	3 cut(s)	405, 698, 1051
SduI	GDGCHC	5 cut(s)	84, 95, 196, 266, 1112
SinI	GGWCC	4 cut(s)	151, 904, 1028, 1101
SmiMI	CAYNNNNRTG	2 cut(s)	516, 941
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	2 cut(s)	781, 946
SseBI	AGGCCT	2 cut(s)	841, 919
SstI	GAGCTC	1 cut(s)	1112
StuI	AGGCCT	2 cut(s)	841, 919
StyD4I	CCNGG	3 cut(s)	403, 696, 1049
TaaI	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
TaiI	ACGT	2 cut(s)	465, 926
TaqI	TCGA	3 cut(s)	78, 229, 729
TauI	GCSGC	4 cut(s)	24, 376, 812, 1019
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	3 cut(s)	312, 348, 471
Tru9I	TTAA	3 cut(s)	312, 348, 471
TscAI	CASTG	1 cut(s)	1003
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	7 cut(s)	9, 113, 121, 281, 818, 821, 1013
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	1003
VpaK11BI	GGWCC	4 cut(s)	151, 904, 1028, 1101
XapI	RAATTY	2 cut(s)	139, 473
XceI	RCATGY	5 cut(s)	515, 581, 781, 796, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.