Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036518.1

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2762

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036518.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 946 bp

agtgttcatgagtagtttgttgtctaattattttaccaggtacggtagtcgaattgtggctatcaaagttctcaatcgtgggagcacttctgaagaaagagctcaacttgagaatcgatttacccgtgaagttaatatgatgactcgagtgaagcatgataatcttgtgaagtttattggagcttgtaaggatcctctaatggtgatagttactgagctattacctggaatgtcactccggaagtacctgattagtattcgtcccaatcaattagaacttcatgtggccattaaatatgctcttgacatcgctcatgcaatggaatgtttacatgccaatggcattatacatagagatctgaaacctgacaatctgttgcttacggcaaatcagaaatctgtaaagcttgcagattttggtcttgcaagagaagaaactgtgactgagatgatgactgcagaaactgggacttaccgttggatggctcctgagctatatagcactgtcacattacggcaaggagagaagaagcattacaataacaaagttgatgtgtatagctttgggatcgtcttatgggaattgttgaccaaccgcatgccctttgaaggcatgtctaatttgcaggctgcctatgctgctgctttcaagcaagagaggcctcgacttccagaggatgtctcccctgatcttgccttcatcatccagtcatgttgggttgaggaccccaatctaaggcctacgttcagccagatcatccgcatgctcaattctttccgcttcaaactctcacccccctcaccacccctaccggacagtgacagcaacgaagcagaagcaagtaacggtaccatgagtgaactatctgtccgggcaagaggcaagttttctttcattaggcaactcttcaatgctaagaagaacaagaacacacaatcaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

314

Amino Acids

35.79

Weight (kDa)

9.25

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	849
AccB1I	GGYRCC	1 cut(s)	849
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	3 cut(s)	596, 761, 779
AclWI	GGATC	3 cut(s)	186, 199, 576
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	3 cut(s)	42, 246, 851
AfiI	CCNNNNNNNGG	3 cut(s)	482, 609, 736
AgsI	TTSAA	4 cut(s)	609, 650, 785, 911
AjnI	CCWGG	2 cut(s)	36, 224
AloI	GAACNNNNNNTCC	2 cut(s)	853, 885
AluBI	AGCT	7 cut(s)	102, 183, 218, 407, 494, 562, 943
AluI	AGCT	7 cut(s)	102, 183, 218, 407, 494, 562, 943
Alw21I	GWGCWC	2 cut(s)	87, 104
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	3 cut(s)	186, 199, 576
AlwNI	CAGNNNCTG	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	3 cut(s)	286, 660, 738
ApeKI	GCWGC	3 cut(s)	630, 639, 642
Asp718I	GGTACC	1 cut(s)	849
AspS9I	GGNCC	1 cut(s)	725
AsuC2I	CCSGG	1 cut(s)	873
AsuHPI	GGTGA	3 cut(s)	215, 784, 793
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	725
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BalI	TGGCCA	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	104
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
Bbv12I	GWGCWC	2 cut(s)	87, 104
BbvI	GCAGC	3 cut(s)	617, 626, 629
BccI	CCATC	1 cut(s)	476
BceAI	ACGGC	2 cut(s)	400, 531
BciT130I	CCWGG	2 cut(s)	38, 226
BcnI	CCSGG	1 cut(s)	873
BcoDI	GTCTC	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	457
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	3 cut(s)	631, 640, 643
BlsI	GCNGC	3 cut(s)	632, 641, 644
Bme1390I	CCNGG	3 cut(s)	38, 226, 873
Bme18I	GGWCC	1 cut(s)	725
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	4 cut(s)	193, 487, 727, 851
BmrFI	CCNGG	3 cut(s)	38, 226, 873
BmrI	ACTGGG	1 cut(s)	475
BmuI	ACTGGG	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	873
Bsa29I	ATCGAT	1 cut(s)	116
BsaWI	WCCGGW	2 cut(s)	238, 812
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 609, 736
Bse1I	ACTGG	2 cut(s)	470, 707
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	38, 226
BseCI	ATCGAT	1 cut(s)	116
BseGI	GGATG	4 cut(s)	487, 683, 703, 757
BseLI	CCNNNNNNNGG	3 cut(s)	482, 609, 736
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	3 cut(s)	205, 436, 481
BseNI	ACTGG	2 cut(s)	470, 707
BseXI	GCAGC	3 cut(s)	617, 626, 629
BshFI	GGCC	3 cut(s)	288, 662, 740
BshNI	GGYRCC	1 cut(s)	849
BshVI	ATCGAT	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	87, 104
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	239, 813, 872
BslFI	GGGAC	2 cut(s)	247, 482
BslI	CCNNNNNNNGG	3 cut(s)	482, 609, 736
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	2 cut(s)	247, 482
BsnI	GGCC	3 cut(s)	288, 662, 740
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	87, 104
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	191, 356, 568, 689, 754
BspACI	CCGC	3 cut(s)	596, 761, 779
BspANI	GGCC	3 cut(s)	288, 662, 740
BspCNI	CTCAG	3 cut(s)	206, 437, 482
BspDI	ATCGAT	1 cut(s)	116
BspEI	TCCGGA	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	193, 487, 727, 851
BspMAI	CTGCAG	1 cut(s)	461
BspPI	GGATC	3 cut(s)	186, 199, 576
BspT107I	GGYRCC	1 cut(s)	849
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	470, 707
BssMI	GATC	5 cut(s)	191, 356, 568, 689, 754
Bst2UI	CCWGG	2 cut(s)	38, 226
Bst4CI	ACNGT	6 cut(s)	45, 440, 477, 506, 819, 849
Bst6I	CTCTTC	1 cut(s)	912
BstC8I	GCNNGC	4 cut(s)	409, 600, 628, 765
BstDEI	CTNAG	5 cut(s)	214, 445, 490, 735, 916
BstF5I	GGATG	4 cut(s)	487, 683, 703, 757
BstKTI	GATC	5 cut(s)	194, 359, 571, 692, 757
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	5 cut(s)	191, 356, 568, 689, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	636, 639, 659
BstNI	CCWGG	2 cut(s)	38, 226
BstNSI	RCATGY	4 cut(s)	336, 602, 617, 767
BstSCI	CCNGG	3 cut(s)	36, 224, 871
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	617, 626, 629
BstX2I	RGATCY	2 cut(s)	191, 356
BstYI	RGATCY	2 cut(s)	191, 356
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	288, 662, 740
BsuTUI	ATCGAT	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	4 cut(s)	487, 683, 703, 757
BtsIMutI	CAGTG	2 cut(s)	502, 824
Cac8I	GCNNGC	4 cut(s)	409, 600, 628, 765
CaiI	CAGNNNCTG	1 cut(s)	465
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	725
ClaI	ATCGAT	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	41, 245, 850
CviQI	GTAC	3 cut(s)	41, 245, 850
DdeI	CTNAG	5 cut(s)	214, 445, 490, 735, 916
DpnI	GATC	5 cut(s)	193, 358, 570, 691, 756
DpnII	GATC	5 cut(s)	191, 356, 568, 689, 754
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Ecl136II	GAGCTC	1 cut(s)	102
Eco147I	AGGCCT	2 cut(s)	662, 740
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	36, 224
EcoT38I	GRGCYC	1 cut(s)	104
FaqI	GGGAC	2 cut(s)	247, 482
Fnu4HI	GCNGC	3 cut(s)	631, 640, 643
FokI	GGATG	4 cut(s)	494, 690, 690, 744
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	631, 640, 643
GluI	GCNGC	3 cut(s)	631, 640, 643
HaeIII	GGCC	3 cut(s)	288, 662, 740
HapII	CCGG	3 cut(s)	239, 813, 872
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	2 cut(s)	113, 143
HpaII	CCGG	3 cut(s)	239, 813, 872
HphI	GGTGA	3 cut(s)	215, 784, 793
Hpy166II	GTNNAC	3 cut(s)	330, 589, 861
Hpy188I	TCNGA	3 cut(s)	92, 361, 394
Hpy188III	TCNNGA	5 cut(s)	8, 239, 303, 489, 672
Hpy8I	GTNNAC	3 cut(s)	330, 589, 861
HpyAV	CCTTC	2 cut(s)	603, 707
HpyCH4III	ACNGT	6 cut(s)	45, 440, 477, 506, 819, 849
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	5 cut(s)	318, 411, 426, 459, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	636, 639, 659
HpyF3I	CTNAG	5 cut(s)	214, 445, 490, 735, 916
HpySE526I	ACGT	1 cut(s)	744
Kpn2I	TCCGGA	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	191, 356, 568, 689, 754
LmnI	GCTCC	3 cut(s)	82, 180, 491
Lsp1109I	GCAGC	3 cut(s)	617, 626, 629
MabI	ACCWGGT	1 cut(s)	36
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	6 cut(s)	209, 232, 440, 506, 819, 843
MalI	GATC	5 cut(s)	193, 358, 570, 691, 756
MboI	GATC	5 cut(s)	191, 356, 568, 689, 754
MboII	GAAGA	5 cut(s)	105, 444, 539, 899, 932
MflI	RGATCY	2 cut(s)	191, 356
MhlI	GDGCHC	2 cut(s)	87, 104
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	6 cut(s)	26, 52, 270, 582, 620, 770
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	205, 652, 668, 673, 716, 809, 873
Mox20I	TGGCCA	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	133, 292
MslI	CAYNNNNRTG	2 cut(s)	337, 762
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	3 cut(s)	239, 813, 872
MspR9I	CCNGG	3 cut(s)	38, 226, 873
MvaI	CCWGG	2 cut(s)	38, 226
MwoI	GCNNNNNNNGC	3 cut(s)	636, 639, 659
NciI	CCSGG	1 cut(s)	873
NdeII	GATC	5 cut(s)	191, 356, 568, 689, 754
NlaIV	GGNNCC	4 cut(s)	193, 487, 727, 851
NmuCI	GTSAC	4 cut(s)	232, 440, 506, 819
NspI	RCATGY	4 cut(s)	336, 602, 617, 767
PaeI	GCATGC	2 cut(s)	602, 767
PaeR7I	CTCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	7
PceI	AGGCCT	2 cut(s)	662, 740
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	632, 641, 644
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	36, 224
PspGI	CCWGG	2 cut(s)	36, 224
PspN4I	GGNNCC	4 cut(s)	193, 487, 727, 851
PspPI	GGNCC	1 cut(s)	725
PspPPI	RGGWCCY	1 cut(s)	725
PspXI	VCTCGAGB	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	191, 356
RsaI	GTAC	3 cut(s)	42, 246, 851
RsaNI	GTAC	3 cut(s)	41, 245, 850
RseI	CAYNNNNRTG	2 cut(s)	337, 762
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	133, 292
SatI	GCNGC	3 cut(s)	631, 640, 643
Sau3AI	GATC	5 cut(s)	191, 356, 568, 689, 754
Sau96I	GGNCC	1 cut(s)	725
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	38, 226, 873
SduI	GDGCHC	2 cut(s)	87, 104
SexAI	ACCWGGT	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	457
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	337, 762
SmlI	CTYRAG	2 cut(s)	108, 145
SmoI	CTYRAG	2 cut(s)	108, 145
SphI	GCATGC	2 cut(s)	602, 767
Sse9I	AATT	6 cut(s)	26, 52, 270, 582, 620, 770
SseBI	AGGCCT	2 cut(s)	662, 740
SsiI	CCGC	3 cut(s)	596, 761, 779
SstI	GAGCTC	1 cut(s)	104
StuI	AGGCCT	2 cut(s)	662, 740
StyD4I	CCNGG	3 cut(s)	36, 224, 871
TaaI	ACNGT	6 cut(s)	45, 440, 477, 506, 819, 849
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	4 cut(s)	50, 116, 146, 665
TasI	AATT	6 cut(s)	26, 52, 270, 582, 620, 770
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	133, 292
Tru9I	TTAA	2 cut(s)	133, 292
TscAI	CASTG	2 cut(s)	509, 824
TseFI	GTSAC	4 cut(s)	232, 440, 506, 819
TseI	GCWGC	3 cut(s)	630, 639, 642
Tsp45I	GTSAC	4 cut(s)	232, 440, 506, 819
TspDTI	ATGAA	3 cut(s)	270, 689, 884
TspRI	CASTG	2 cut(s)	509, 824
VpaK11BI	GGWCC	1 cut(s)	725
XceI	RCATGY	4 cut(s)	336, 602, 617, 767
XhoI	CTCGAG	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.