Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Reverse (-)

8546239 .. 8549405

Gene Structure 3167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAGTTGTAGTGTGAACAGTGGAGGAAGACAGCAGAGGAATTCGGCTTCGGTCTCAATTACGGCGCAGCAGCTGGCAATCGACGAGAGCCTGCTGGTTGATCCCAAGTTGTTGTTTATTGGGGCGAAAATTGGTGAGGGAGCTCATGGGAAAGTTTATGAAGGAAGGTACGGTAGTCGAATTGTGGCTATCAAAGTTCTCAATCGTGGGAGCACTTCTGAAGAAAGAGCTCAACTTGAGAATCGATTTGCCCGTGAAGTTAATATGATGACTCGAGTGAAGCATGAAAATCTTGTGAAGTTTATTGGAGCTTGTAAGGATCCTCTAATGGTGATAGTTACTGAGCTATTACCTGGAATGTCGCTCCGGAAGTACCTGATTAGTATTCGTCCCAATCAATTAGAACTTCATGTGGCCATTAAATATGCTCTTGACATCGCTCATGCAATGGAATGTTTACATGCCAATGGCATTATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGCAAATCAGAAATCTGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACTGGGACTTACCGTTGGATGGCTCCTGAGCTATATAGCACTGTCACATTACGGCAAGGAGAGAAGAAGCATTACAATAACAAAGTTGATGTGTATAGCTTTGGGATCGTCTTATGGGAATTGTTGACCAACCGCATGCCCTTTGAAGGCATGTCTAATTTGCAGGCTGCCTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCGACTTCCAGAGGATGTCTCCCCTGATCTTGCCTTCATCATCCAGTCATGTTGGGTTGAGGACCCCAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAACTCTTTCCGCTTCAAACTCTCACCCCCCTCACCACCCCTACCGGACAGTGACAGCAACGAAGCAGAAGCAAGTAACGGTACCATGAGTGAACTATCTGTCCGGGCAAGAGGCAAGTTTTCTTTCATTAGGCAACTCTTCAATGCTAAGAAGAACAAGAACACACAATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

40.1

Weight (kDa)

9.14

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	41 - 299	1.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	42 - 297	8.1e-56	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	1 cut(s)	977
AccIII	TCCGGA	1 cut(s)	366
AciI	CCGC	3 cut(s)	724, 889, 907
AclWI	GGATC	4 cut(s)	95, 314, 327, 704
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	170, 374, 979
AfiI	CCNNNNNNNGG	3 cut(s)	610, 737, 864
AgsI	TTSAA	4 cut(s)	737, 778, 913, 1039
AjnI	CCWGG	1 cut(s)	352
AloI	GAACNNNNNNTCC	2 cut(s)	981, 1013
AluBI	AGCT	9 cut(s)	73, 143, 230, 311, 346, 535, 622, 690, 1071
AluI	AGCT	9 cut(s)	73, 143, 230, 311, 346, 535, 622, 690, 1071
Alw21I	GWGCWC	3 cut(s)	145, 215, 232
Alw26I	GTCTC	2 cut(s)	58, 814
AlwI	GGATC	4 cut(s)	95, 314, 327, 704
AlwNI	CAGNNNCTG	2 cut(s)	73, 593
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	3 cut(s)	414, 788, 866
ApeKI	GCWGC	5 cut(s)	67, 70, 758, 767, 770
ApoI	RAATTY	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	1001
AsuHPI	GGTGA	4 cut(s)	146, 343, 912, 921
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	853
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BalI	TGGCCA	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	977
BanII	GRGCYC	2 cut(s)	145, 232
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	3 cut(s)	145, 215, 232
BbvI	GCAGC	5 cut(s)	79, 82, 745, 754, 757
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	3 cut(s)	78, 528, 659
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	1001
BcoDI	GTCTC	2 cut(s)	58, 814
BfmI	CTRYAG	1 cut(s)	585
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	5 cut(s)	68, 71, 759, 768, 771
BlsI	GCNGC	5 cut(s)	69, 72, 760, 769, 772
Bme1390I	CCNGG	2 cut(s)	354, 1001
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	4 cut(s)	321, 615, 855, 979
BmrFI	CCNGG	2 cut(s)	354, 1001
BmrI	ACTGGG	1 cut(s)	603
BmuI	ACTGGG	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	794, 826
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	1001
Bsa29I	ATCGAT	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	58
BsaWI	WCCGGW	2 cut(s)	366, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	610, 737, 864
Bse1I	ACTGG	2 cut(s)	598, 835
Bse3DI	GCAATG	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	244
BseGI	GGATG	4 cut(s)	615, 811, 831, 885
BseLI	CCNNNNNNNGG	3 cut(s)	610, 737, 864
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	333, 564, 609
BseNI	ACTGG	2 cut(s)	598, 835
BseXI	GCAGC	5 cut(s)	79, 82, 745, 754, 757
BshFI	GGCC	3 cut(s)	416, 790, 868
BshNI	GGYRCC	1 cut(s)	977
BshVI	ATCGAT	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	145, 215, 232
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	367, 941, 1000
BslFI	GGGAC	2 cut(s)	375, 610
BslI	CCNNNNNNNGG	3 cut(s)	610, 737, 864
BsmAI	GTCTC	2 cut(s)	58, 814
BsmFI	GGGAC	2 cut(s)	375, 610
BsnI	GGCC	3 cut(s)	416, 790, 868
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	145, 215, 232
Bsp13I	TCCGGA	1 cut(s)	366
Bsp143I	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
BspACI	CCGC	3 cut(s)	724, 889, 907
BspANI	GGCC	3 cut(s)	416, 790, 868
BspCNI	CTCAG	3 cut(s)	334, 565, 610
BspDI	ATCGAT	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	321, 615, 855, 979
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	4 cut(s)	95, 314, 327, 704
BspT107I	GGYRCC	1 cut(s)	977
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	2 cut(s)	598, 835
BssMI	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	7 cut(s)	20, 173, 568, 605, 634, 947, 977
Bst6I	CTCTTC	1 cut(s)	1040
BstC8I	GCNNGC	6 cut(s)	75, 92, 537, 728, 756, 893
BstDEI	CTNAG	5 cut(s)	342, 573, 618, 863, 1044
BstF5I	GGATG	4 cut(s)	615, 811, 831, 885
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	6 cut(s)	103, 322, 487, 699, 820, 885
BstMAI	GTCTC	2 cut(s)	58, 814
BstMBI	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	764, 767, 787
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	4 cut(s)	464, 730, 745, 895
BstSCI	CCNGG	2 cut(s)	352, 999
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	5 cut(s)	79, 82, 745, 754, 757
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	319, 484
BstYI	RGATCY	2 cut(s)	319, 484
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	416, 790, 868
BsuTUI	ATCGAT	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	421
BtsCI	GGATG	4 cut(s)	615, 811, 831, 885
BtsIMutI	CAGTG	3 cut(s)	25, 630, 952
Cac8I	GCNNGC	6 cut(s)	75, 92, 537, 728, 756, 893
CaiI	CAGNNNCTG	2 cut(s)	73, 593
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	853
ClaI	ATCGAT	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	169, 373, 978
CviQI	GTAC	3 cut(s)	169, 373, 978
DdeI	CTNAG	5 cut(s)	342, 573, 618, 863, 1044
DpnI	GATC	6 cut(s)	102, 321, 486, 698, 819, 884
DpnII	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	1040
EarI	CTCTTC	1 cut(s)	1040
Ecl136II	GAGCTC	2 cut(s)	143, 230
Eco147I	AGGCCT	2 cut(s)	790, 868
Eco24I	GRGCYC	2 cut(s)	145, 232
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	853
Eco53kI	GAGCTC	2 cut(s)	143, 230
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	2 cut(s)	143, 230
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	145, 232
FaqI	GGGAC	2 cut(s)	375, 610
Fnu4HI	GCNGC	5 cut(s)	68, 71, 759, 768, 771
FokI	GGATG	4 cut(s)	622, 818, 818, 872
FriOI	GRGCYC	2 cut(s)	145, 232
Fsp4HI	GCNGC	5 cut(s)	68, 71, 759, 768, 771
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	5 cut(s)	68, 71, 759, 768, 771
HaeIII	GGCC	3 cut(s)	416, 790, 868
HapII	CCGG	3 cut(s)	367, 941, 1000
HhaI	GCGC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	2 cut(s)	241, 271
HpaII	CCGG	3 cut(s)	367, 941, 1000
HphI	GGTGA	4 cut(s)	146, 343, 912, 921
Hpy166II	GTNNAC	4 cut(s)	16, 458, 717, 989
Hpy188I	TCNGA	2 cut(s)	220, 522
Hpy188III	TCNNGA	4 cut(s)	367, 431, 617, 800
Hpy8I	GTNNAC	4 cut(s)	16, 458, 717, 989
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	155, 159, 731, 835
HpyCH4III	ACNGT	7 cut(s)	20, 173, 568, 605, 634, 947, 977
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	5 cut(s)	446, 539, 554, 587, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	764, 767, 787
HpyF3I	CTNAG	5 cut(s)	342, 573, 618, 863, 1044
HpySE526I	ACGT	1 cut(s)	872
HspAI	GCGC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	366
KpnI	GGTACC	1 cut(s)	981
Kzo9I	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
LmnI	GCTCC	5 cut(s)	140, 210, 308, 369, 619
Lsp1109I	GCAGC	5 cut(s)	79, 82, 745, 754, 757
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	5 cut(s)	337, 568, 634, 947, 971
MalI	GATC	6 cut(s)	102, 321, 486, 698, 819, 884
MboI	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
MboII	GAAGA	6 cut(s)	39, 233, 572, 667, 1027, 1060
MflI	RGATCY	2 cut(s)	319, 484
MhlI	GDGCHC	3 cut(s)	145, 215, 232
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	7 cut(s)	40, 57, 129, 180, 398, 710, 748
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	587
Mox20I	TGGCCA	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	2 cut(s)	261, 420
MslI	CAYNNNNRTG	2 cut(s)	465, 890
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	3 cut(s)	367, 941, 1000
MspR9I	CCNGG	2 cut(s)	354, 1001
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	764, 767, 787
NciI	CCSGG	1 cut(s)	1001
NdeII	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
NlaIV	GGNNCC	4 cut(s)	321, 615, 855, 979
NmuCI	GTSAC	3 cut(s)	568, 634, 947
NspI	RCATGY	4 cut(s)	464, 730, 745, 895
PaeI	GCATGC	2 cut(s)	730, 895
PaeR7I	CTCGAG	1 cut(s)	273
PceI	AGGCCT	2 cut(s)	790, 868
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	69, 72, 760, 769, 772
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	853
Psp124BI	GAGCTC	2 cut(s)	145, 232
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	321, 615, 855, 979
PspPI	GGNCC	1 cut(s)	853
PspPPI	RGGWCCY	1 cut(s)	853
PspXI	VCTCGAGB	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	589
PstNI	CAGNNNCTG	2 cut(s)	73, 593
PsuI	RGATCY	2 cut(s)	319, 484
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	3 cut(s)	170, 374, 979
RsaNI	GTAC	3 cut(s)	169, 373, 978
RseI	CAYNNNNRTG	2 cut(s)	465, 890
SacI	GAGCTC	2 cut(s)	145, 232
SaqAI	TTAA	2 cut(s)	261, 420
SatI	GCNGC	5 cut(s)	68, 71, 759, 768, 771
Sau3AI	GATC	6 cut(s)	100, 319, 484, 696, 817, 882
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	354, 1001
SduI	GDGCHC	3 cut(s)	145, 215, 232
SfcI	CTRYAG	1 cut(s)	585
Sfr274I	CTCGAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	853
SlaI	CTCGAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	465, 890
SmlI	CTYRAG	2 cut(s)	236, 273
SmoI	CTYRAG	2 cut(s)	236, 273
SphI	GCATGC	2 cut(s)	730, 895
Sse9I	AATT	7 cut(s)	40, 57, 129, 180, 398, 710, 748
SseBI	AGGCCT	2 cut(s)	790, 868
SsiI	CCGC	3 cut(s)	724, 889, 907
SstI	GAGCTC	2 cut(s)	145, 232
StuI	AGGCCT	2 cut(s)	790, 868
StyD4I	CCNGG	2 cut(s)	352, 999
TaaI	ACNGT	7 cut(s)	20, 173, 568, 605, 634, 947, 977
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	5 cut(s)	81, 178, 244, 274, 793
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	7 cut(s)	40, 57, 129, 180, 398, 710, 748
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	261, 420
Tru9I	TTAA	2 cut(s)	261, 420
TscAI	CASTG	3 cut(s)	25, 637, 952
TseFI	GTSAC	3 cut(s)	568, 634, 947
TseI	GCWGC	5 cut(s)	67, 70, 758, 767, 770
Tsp45I	GTSAC	3 cut(s)	568, 634, 947
TspDTI	ATGAA	5 cut(s)	174, 300, 398, 817, 1012
TspRI	CASTG	3 cut(s)	25, 637, 952
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	4 cut(s)	464, 730, 745, 895
XhoI	CTCGAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.