Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Reverse (-)

5952419 .. 5956540

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGTTGTAGTGTGAACAGTGGAGGAAGAGAGCAGAGGAATTCGGGTTCGAATGGTTCAATTACGGCAAAGCAGCTGACAATCGACGAGAGCCTGCTGGTTGATCCCAAGTTGTTGTTTATTGGGGCGAAAATTGGTGAGGGAGCTCATGGGAAAGTTTATCAAGGAAGGTATGGTAATCGAATTGTTGCTATCAAAGTTCTCAATCGTGGGAGCACTTCTGAAGAAAGAGCTCAACTTGAGAATCGGTTTGCCCGTGAAGTTAATATGATGACTCGAGTAAAGCATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAGGATCCTCTAATGGTGATAGTTACTGAGCTATTACCTGGAATGTCACTTCGGAAGTACCTAATTAGTATTCGTCCTAATCCATTAGACCTTCACGTGGCCATTAAATTTGCTCTTGACATCGCCCATGCAATGGAATGTTTACATGCCAATGGCATTATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACGGAAAATCAGAAATCTGTGAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACAGTAACTGAGATGATGACTGCAGAGACTGGGACTTATCGTTGGATGGCTCCTGAGCTATATAGCACTGTCACACTACGGCAAGGAGAGAAGAAGCATTACAATAACAAAGTGGATGTGTATAGCTTTGGGATTGTCTTATGGGAATTGTTGACCAACCGCATGCCCTTTGAAGGCATGTCTAATTTGCAGGCTGCCTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCAACTTCCAGAGGATGTCTCCCCTGATCTTGCCTTCATCATCCAGTCATGTTGGGTTGAGGACTCCAATCTAAGGCCTACATTCAGCCAGATCATCCGCATGCTCAACTCTTTCCTCTTCAAACTCTCACCCCCCTCACCACCCCTACCAGACAATGACAGCAACGAAGCAGAAGCAAGTAACGGTACCATTACTGCACTATCTGTCCGGGCAAGAGGGAAGTTTTCTTTCATTAGGCAACTCTTCAATGCTAAGAAGAACAAGAACACACAATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.09

Weight (kDa)

9.03

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	42 - 300	2.3e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	43 - 298	1.9e-55	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	980
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	451
AciI	CCGC	2 cut(s)	727, 892
AclWI	GGATC	3 cut(s)	98, 317, 330
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	2 cut(s)	40, 425
AcuI	CTGAAG	1 cut(s)	243
AcvI	CACGTG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	377, 982
AfiI	CCNNNNNNNGG	4 cut(s)	415, 451, 740, 867
AgsI	TTSAA	5 cut(s)	60, 740, 781, 916, 1042
AjnI	CCWGG	1 cut(s)	355
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	9 cut(s)	76, 146, 233, 314, 349, 538, 625, 693, 1074
AluI	AGCT	9 cut(s)	76, 146, 233, 314, 349, 538, 625, 693, 1074
Alw21I	GWGCWC	3 cut(s)	148, 218, 235
Alw26I	GTCTC	2 cut(s)	587, 817
AlwI	GGATC	3 cut(s)	98, 317, 330
AlwNI	CAGNNNCTG	2 cut(s)	575, 596
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	417, 791, 869
ApeKI	GCWGC	4 cut(s)	73, 761, 770, 773
ApoI	RAATTY	2 cut(s)	40, 425
Asp718I	GGTACC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	1004
AsuHPI	GGTGA	4 cut(s)	149, 346, 915, 924
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	2 cut(s)	148, 235
BarI	GAAGNNNNNNTAC	2 cut(s)	650, 682
BbrPI	CACGTG	1 cut(s)	415
Bbv12I	GWGCWC	3 cut(s)	148, 218, 235
BbvI	GCAGC	4 cut(s)	85, 748, 757, 760
BccI	CCATC	1 cut(s)	607
BceAI	ACGGC	2 cut(s)	81, 662
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	2 cut(s)	587, 817
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	4 cut(s)	74, 762, 771, 774
BlsI	GCNGC	4 cut(s)	75, 763, 772, 775
Bme1390I	CCNGG	2 cut(s)	357, 1004
BmeT110I	CYCGRG	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	324, 618, 982
BmrFI	CCNGG	2 cut(s)	357, 1004
BmrI	ACTGGG	1 cut(s)	606
BmuI	ACTGGG	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
Bpu10I	CCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	1004
BsaAI	YACGTR	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 451, 740, 867
Bse1I	ACTGG	2 cut(s)	601, 838
Bse3DI	GCAATG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	357
BseGI	GGATG	5 cut(s)	618, 688, 814, 834, 888
BseLI	CCNNNNNNNGG	4 cut(s)	415, 451, 740, 867
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	336, 567, 612
BseNI	ACTGG	2 cut(s)	601, 838
BseXI	GCAGC	4 cut(s)	85, 748, 757, 760
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	3 cut(s)	419, 793, 871
BshNI	GGYRCC	1 cut(s)	980
BsiHKAI	GWGCWC	3 cut(s)	148, 218, 235
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	1003
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	4 cut(s)	415, 451, 740, 867
BsmAI	GTCTC	2 cut(s)	587, 817
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	419, 793, 871
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	148, 218, 235
Bsp143I	GATC	5 cut(s)	103, 322, 487, 820, 885
BspACI	CCGC	2 cut(s)	727, 892
BspANI	GGCC	3 cut(s)	419, 793, 871
BspCNI	CTCAG	3 cut(s)	337, 568, 613
BspLI	GGNNCC	3 cut(s)	324, 618, 982
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	3 cut(s)	98, 317, 330
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	601, 838
BssMI	GATC	5 cut(s)	103, 322, 487, 820, 885
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	20, 571, 637, 980
Bst6I	CTCTTC	3 cut(s)	22, 917, 1043
BstBAI	YACGTR	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	5 cut(s)	95, 540, 731, 759, 896
BstDEI	CTNAG	5 cut(s)	345, 576, 621, 866, 1047
BstF5I	GGATG	5 cut(s)	618, 688, 814, 834, 888
BstKTI	GATC	5 cut(s)	106, 325, 490, 823, 888
BstMAI	GTCTC	2 cut(s)	587, 817
BstMBI	GATC	5 cut(s)	103, 322, 487, 820, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 770, 790
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	4 cut(s)	467, 733, 748, 898
BstSCI	CCNGG	2 cut(s)	355, 1002
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	4 cut(s)	85, 748, 757, 760
BstX2I	RGATCY	2 cut(s)	322, 487
BstYI	RGATCY	2 cut(s)	322, 487
BsuRI	GGCC	3 cut(s)	419, 793, 871
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	5 cut(s)	618, 688, 814, 834, 888
BtsIMutI	CAGTG	2 cut(s)	25, 633
Cac8I	GCNNGC	5 cut(s)	95, 540, 731, 759, 896
CaiI	CAGNNNCTG	2 cut(s)	575, 596
Csp6I	GTAC	2 cut(s)	376, 981
CviAII	CATG	8 cut(s)	149, 287, 446, 464, 730, 745, 843, 895
CviQI	GTAC	2 cut(s)	376, 981
DdeI	CTNAG	5 cut(s)	345, 576, 621, 866, 1047
DpnI	GATC	5 cut(s)	105, 324, 489, 822, 887
DpnII	GATC	5 cut(s)	103, 322, 487, 820, 885
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	22, 917, 1043
EarI	CTCTTC	3 cut(s)	22, 917, 1043
Ecl136II	GAGCTC	2 cut(s)	146, 233
Eco147I	AGGCCT	2 cut(s)	793, 871
Eco24I	GRGCYC	2 cut(s)	148, 235
Eco53kI	GAGCTC	2 cut(s)	146, 233
Eco57I	CTGAAG	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	276
EcoICRI	GAGCTC	2 cut(s)	146, 233
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	148, 235
FaeI	CATG	8 cut(s)	152, 290, 449, 467, 733, 748, 846, 898
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	8 cut(s)	148, 286, 445, 463, 729, 744, 842, 894
Fnu4HI	GCNGC	4 cut(s)	74, 762, 771, 774
FokI	GGATG	5 cut(s)	625, 695, 821, 821, 875
FriOI	GRGCYC	2 cut(s)	148, 235
Fsp4HI	GCNGC	4 cut(s)	74, 762, 771, 774
GluI	GCNGC	4 cut(s)	74, 762, 771, 774
HaeIII	GGCC	3 cut(s)	419, 793, 871
HapII	CCGG	1 cut(s)	1003
Hin1II	CATG	8 cut(s)	152, 290, 449, 467, 733, 748, 846, 898
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	244, 274, 857
HpaII	CCGG	1 cut(s)	1003
HphI	GGTGA	4 cut(s)	149, 346, 915, 924
Hpy166II	GTNNAC	3 cut(s)	16, 461, 720
Hpy188I	TCNGA	3 cut(s)	223, 372, 525
Hpy188III	TCNNGA	3 cut(s)	434, 620, 803
Hpy8I	GTNNAC	3 cut(s)	16, 461, 720
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	162, 419, 734, 838
HpyCH4III	ACNGT	4 cut(s)	20, 571, 637, 980
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	6 cut(s)	449, 542, 557, 590, 757, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 770, 790
HpyF3I	CTNAG	5 cut(s)	345, 576, 621, 866, 1047
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	8 cut(s)	152, 290, 449, 467, 733, 748, 846, 898
KpnI	GGTACC	1 cut(s)	984
Kzo9I	GATC	5 cut(s)	103, 322, 487, 820, 885
LmnI	GCTCC	4 cut(s)	143, 213, 311, 622
Lsp1109I	GCAGC	4 cut(s)	85, 748, 757, 760
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	5 cut(s)	340, 363, 571, 637, 974
MalI	GATC	5 cut(s)	105, 324, 489, 822, 887
MboI	GATC	5 cut(s)	103, 322, 487, 820, 885
MboII	GAAGA	7 cut(s)	39, 236, 575, 670, 904, 1030, 1063
MflI	RGATCY	2 cut(s)	322, 487
MhlI	GDGCHC	3 cut(s)	148, 218, 235
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	8 cut(s)	40, 60, 132, 183, 381, 425, 713, 751
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	268, 851
MmeI	TCCRAC	1 cut(s)	590
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	2 cut(s)	264, 423
MslI	CAYNNNNRTG	2 cut(s)	468, 893
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	1 cut(s)	1003
MspR9I	CCNGG	2 cut(s)	357, 1004
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	3 cut(s)	767, 770, 790
NciI	CCSGG	1 cut(s)	1004
NdeII	GATC	5 cut(s)	103, 322, 487, 820, 885
NlaIII	CATG	8 cut(s)	152, 290, 449, 467, 733, 748, 846, 898
NlaIV	GGNNCC	3 cut(s)	324, 618, 982
NmuCI	GTSAC	2 cut(s)	363, 637
NspI	RCATGY	4 cut(s)	467, 733, 748, 898
NspV	TTCGAA	1 cut(s)	50
PaeI	GCATGC	2 cut(s)	733, 898
PaeR7I	CTCGAG	1 cut(s)	276
PceI	AGGCCT	2 cut(s)	793, 871
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	75, 763, 772, 775
PleI	GAGTC	2 cut(s)	268, 851
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	268, 851
Ppu21I	YACGTR	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	148, 235
Psp6I	CCWGG	1 cut(s)	355
PspCI	CACGTG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	324, 618, 982
PspXI	VCTCGAGB	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	2 cut(s)	575, 596
PsuI	RGATCY	2 cut(s)	322, 487
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	377, 982
RsaNI	GTAC	2 cut(s)	376, 981
RseI	CAYNNNNRTG	2 cut(s)	468, 893
SacI	GAGCTC	2 cut(s)	148, 235
SaqAI	TTAA	2 cut(s)	264, 423
SatI	GCNGC	4 cut(s)	74, 762, 771, 774
Sau3AI	GATC	5 cut(s)	103, 322, 487, 820, 885
SchI	GAGTC	2 cut(s)	268, 851
ScrFI	CCNGG	2 cut(s)	357, 1004
SduI	GDGCHC	3 cut(s)	148, 218, 235
SfcI	CTRYAG	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	468, 893
SmlI	CTYRAG	2 cut(s)	239, 276
SmoI	CTYRAG	2 cut(s)	239, 276
SphI	GCATGC	2 cut(s)	733, 898
Sse9I	AATT	8 cut(s)	40, 60, 132, 183, 381, 425, 713, 751
SseBI	AGGCCT	2 cut(s)	793, 871
SsiI	CCGC	2 cut(s)	727, 892
SstI	GAGCTC	2 cut(s)	148, 235
StuI	AGGCCT	2 cut(s)	793, 871
StyD4I	CCNGG	2 cut(s)	355, 1002
TaaI	ACNGT	4 cut(s)	20, 571, 637, 980
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	4 cut(s)	50, 84, 181, 277
TasI	AATT	8 cut(s)	40, 60, 132, 183, 381, 425, 713, 751
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	264, 423
Tru9I	TTAA	2 cut(s)	264, 423
TscAI	CASTG	2 cut(s)	25, 640
TseFI	GTSAC	2 cut(s)	363, 637
TseI	GCWGC	4 cut(s)	73, 761, 770, 773
Tsp45I	GTSAC	2 cut(s)	363, 637
TspDTI	ATGAA	3 cut(s)	303, 820, 1015
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	25, 640
Van91I	CCANNNNNTGG	1 cut(s)	451
XapI	RAATTY	2 cut(s)	40, 425
XceI	RCATGY	4 cut(s)	467, 733, 748, 898
XhoI	CTCGAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.