Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Forward (+)

332330 .. 334543

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGTAGCGATGATACGATTGAGGAGAGTTTGCTTGTGGATCCCAAATTGTTGTTCATCGGCTCCAAGATTGGTGAAGGCGCTCACGGCAAAGTCTACCAAGGAAGGTATGGTCGTCAGATTGTTGCAATCAAAGTTGTCAACCGGGGCTCCAAACCTGACCAGCAATCTTCTCTCGAGAGCCGTTTCGTCCGTGAGGTCAATATGATGTCCCGCGTTCAACACCATAACCTTGTCAAGTTTATTGGAGCGTGCAAAGATCCTTTAATGGTAATAGTAACAGAGCTTCTCCCAGGGATGTCTCTCCGTAAATATCTCACCAGCATCCGTCCTCAGTTGCTCCATCTCCCTCTTGCTCTCTCCTTTGCCCTTGACATCGCCCGTGCCTTGCACTGCTTACACGCCAATGGTATCATTCACAGAGACCTCAAACCTGACAACTTATTGCTCACGGAGAATCACAAATCCGTCAAGCTTGCTGATTTCGGGCTTGCTAGGGAAGAATCCGTGACTGAGATGATGACTGCTGAGACTGGGACTTACCGTTGGATGGCTCCTGAGCTCTACAGTACAGTGACCCTGCGTCAAGGAGAGAAGAAGCATTACAACAACAAAGTTGATGTCTACAGCTTTGGAATCGTGCTTTGGGAGCTTCTCACTAATCGTATGCCATTCGAGGGCATGTCCAATCTGCAAGCCGCCTACGCAGCAGCATTCAAGCAGGAGAGGCCCGTAATGCCAGAGGGGATATCTCCGAGTCTGGCGTTCATAGTGCAGTCTTGTTGGGTGGAGGACCCAAACATGAGGCCAAGCTTCAGTCAAATTATCAGACTGCTCAATGAGTTCCTCCTTACCCTGACTCCTCCGCCTCCTCAGCCTCTGCCTGAGACTGCCACCAACAGGACCAATGGCCGAGCCATCACTGAGTTCTCCATCCGTCCAAAAGGGAAATTTGCCTTCATTCGCCAGCTTTTCGCTGCCAAGAGGAACATAAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.59

Weight (kDa)

9.36

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	20 - 86	1.5e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	21 - 300	2.6e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	101 - 302	2.5e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	96, 624
AccII	CGCG	1 cut(s)	216
AciI	CCGC	3 cut(s)	214, 699, 866
AclWI	GGATC	3 cut(s)	35, 48, 254
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	1 cut(s)	950
AcuI	CTGAAG	1 cut(s)	799
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	3 cut(s)	550, 677, 900
AgsI	TTSAA	2 cut(s)	221, 718
AhdI	GACNNNNNGTC	1 cut(s)	582
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 628, 660
AluBI	AGCT	7 cut(s)	286, 475, 562, 630, 652, 813, 970
AluI	AGCT	7 cut(s)	286, 475, 562, 630, 652, 813, 970
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	4 cut(s)	306, 417, 524, 881
AlwI	GGATC	3 cut(s)	35, 48, 254
AlwNI	CAGNNNCTG	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	728, 806, 910
ApeKI	GCWGC	3 cut(s)	707, 710, 977
ApoI	RAATTY	1 cut(s)	950
ArsI	GACNNNNNNTTYG	2 cut(s)	606, 638
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	729, 793, 903
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	86, 310
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	793, 903
BamHI	GGATCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	152, 564
BarI	GAAGNNNNNNTAC	4 cut(s)	270, 302, 587, 619
Bbv12I	GWGCWC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	873
BbvI	GCAGC	3 cut(s)	719, 722, 964
BccI	CCATC	4 cut(s)	351, 544, 926, 941
BceAI	ACGGC	2 cut(s)	103, 168
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	4 cut(s)	306, 417, 524, 881
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	565, 625
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	4 cut(s)	699, 708, 711, 978
BlsI	GCNGC	4 cut(s)	700, 709, 712, 979
Bme1390I	CCNGG	2 cut(s)	146, 294
Bme18I	GGWCC	2 cut(s)	793, 903
BmeRI	GACNNNNNGTC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	729, 793, 903
BmiI	GGNNCC	5 cut(s)	42, 64, 151, 555, 795
BmrFI	CCNGG	2 cut(s)	146, 294
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	558, 873
BpuMI	CCSGG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	100, 145, 292, 293
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 844, 874
Bsc4I	CCNNNNNNNGG	3 cut(s)	550, 677, 900
Bse1I	ACTGG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	100, 145, 292, 293
BseGI	GGATG	4 cut(s)	303, 324, 555, 933
BseLI	CCNNNNNNNGG	3 cut(s)	550, 677, 900
BseMII	CTCAG	7 cut(s)	347, 504, 519, 549, 876, 887, 915
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	3 cut(s)	38, 852, 861
BseXI	GCAGC	3 cut(s)	719, 722, 964
BsgI	GTGCAG	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	730, 808, 912
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	196, 550
BslI	CCNNNNNNNGG	3 cut(s)	550, 677, 900
BsmAI	GTCTC	4 cut(s)	306, 417, 524, 881
BsmFI	GGGAC	2 cut(s)	196, 550
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	730, 808, 912
Bso31I	GGTCTC	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	152, 564
Bsp143I	GATC	2 cut(s)	40, 259
BspACI	CCGC	3 cut(s)	214, 699, 866
BspANI	GGCC	3 cut(s)	730, 808, 912
BspCNI	CTCAG	7 cut(s)	346, 505, 520, 550, 877, 886, 916
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	5 cut(s)	42, 64, 151, 555, 795
BspPI	GGATC	3 cut(s)	35, 48, 254
BspTNI	GGTCTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	4 cut(s)	100, 145, 292, 293
BssMI	GATC	2 cut(s)	40, 259
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	545, 569, 574
BstC8I	GCNNGC	5 cut(s)	253, 477, 492, 696, 968
BstDEI	CTNAG	8 cut(s)	333, 513, 528, 558, 873, 885, 924, 999
BstF5I	GGATG	4 cut(s)	303, 324, 555, 933
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	43, 262
BstMAI	GTCTC	4 cut(s)	306, 417, 524, 881
BstMBI	GATC	2 cut(s)	40, 259
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 649, 704, 707, 727, 736, 874
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	144, 292
BstSFI	CTRYAG	2 cut(s)	565, 625
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	719, 722, 964
BstX2I	RGATCY	2 cut(s)	40, 259
BstYI	RGATCY	2 cut(s)	40, 259
BsuRI	GGCC	3 cut(s)	730, 808, 912
BtgZI	GCGATG	2 cut(s)	24, 361
BtsCI	GGATG	4 cut(s)	303, 324, 555, 933
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	3 cut(s)	391, 579, 921
Cac8I	GCNNGC	5 cut(s)	253, 477, 492, 696, 968
CaiI	CAGNNNCTG	1 cut(s)	880
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	729, 793, 903
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	2 cut(s)	682, 802
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	8 cut(s)	333, 513, 528, 558, 873, 885, 924, 999
DpnI	GATC	2 cut(s)	42, 261
DpnII	GATC	2 cut(s)	40, 259
DriI	GACNNNNNGTC	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	910
Eam1105I	GACNNNNNGTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	855
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	152, 564
Eco31I	GGTCTC	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	750
Eco47I	GGWCC	2 cut(s)	793, 903
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	799
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	2 cut(s)	152, 564
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	2 cut(s)	685, 805
FaiI	YATR	8 cut(s)	111, 206, 228, 668, 683, 770, 803, 992
FaqI	GGGAC	2 cut(s)	196, 550
FatI	CATG	2 cut(s)	681, 801
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	2 cut(s)	96, 624
Fnu4HI	GCNGC	4 cut(s)	699, 708, 711, 978
FokI	GGATG	4 cut(s)	310, 311, 562, 920
FriOI	GRGCYC	2 cut(s)	152, 564
Fsp4HI	GCNGC	4 cut(s)	699, 708, 711, 978
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	4 cut(s)	699, 708, 711, 978
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	730, 808, 912
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	685, 805
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	2 cut(s)	473, 811
HinfI	GANTC	5 cut(s)	457, 503, 636, 757, 859
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	86, 310
Hpy166II	GTNNAC	3 cut(s)	97, 142, 625
Hpy188I	TCNGA	3 cut(s)	120, 756, 830
Hpy188III	TCNNGA	3 cut(s)	176, 178, 557
Hpy8I	GTNNAC	3 cut(s)	97, 142, 625
HpyAV	CCTTC	3 cut(s)	71, 99, 967
HpyCH4III	ACNGT	3 cut(s)	545, 569, 574
HpyCH4V	TGCA	5 cut(s)	128, 255, 391, 694, 775
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 649, 704, 707, 727, 736, 874
HpyF3I	CTNAG	8 cut(s)	333, 513, 528, 558, 873, 885, 924, 999
Hsp92II	CATG	2 cut(s)	685, 805
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	40, 259
LmnI	GCTCC	6 cut(s)	68, 155, 248, 345, 559, 649
Lsp1109I	GCAGC	3 cut(s)	719, 722, 964
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	495
MaeIII	GTNAC	3 cut(s)	277, 508, 574
MalI	GATC	2 cut(s)	42, 261
MboI	GATC	2 cut(s)	40, 259
MboII	GAAGA	3 cut(s)	162, 512, 607
MflI	RGATCY	2 cut(s)	40, 259
MhlI	GDGCHC	2 cut(s)	152, 564
MluCI	AATT	3 cut(s)	47, 822, 950
MlyI	GAGTC	2 cut(s)	766, 853
MmeI	TCCRAC	1 cut(s)	527
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	146, 294
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	7 cut(s)	87, 649, 704, 707, 727, 736, 874
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	40, 259
NlaIII	CATG	2 cut(s)	685, 805
NlaIV	GGNNCC	5 cut(s)	42, 64, 151, 555, 795
NmeAIII	GCCGAG	1 cut(s)	938
NmuCI	GTSAC	2 cut(s)	508, 574
NspI	RCATGY	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	293
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	457, 503, 636
PkrI	GCNGC	4 cut(s)	700, 709, 712, 979
PleI	GAGTC	2 cut(s)	765, 853
PpsI	GAGTC	2 cut(s)	765, 853
PpuMI	RGGWCCY	1 cut(s)	793
Psp124BI	GAGCTC	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	5 cut(s)	42, 64, 151, 555, 795
PspPI	GGNCC	3 cut(s)	729, 793, 903
PspPPI	RGGWCCY	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	880
PsuI	RGATCY	2 cut(s)	40, 259
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	699, 708, 711, 978
Sau3AI	GATC	2 cut(s)	40, 259
Sau96I	GGNCC	3 cut(s)	729, 793, 903
SchI	GAGTC	2 cut(s)	766, 853
ScrFI	CCNGG	2 cut(s)	146, 294
SduI	GDGCHC	2 cut(s)	152, 564
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	2 cut(s)	565, 625
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	793, 903
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	47, 822, 950
SsiI	CCGC	3 cut(s)	214, 699, 866
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	144, 292
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	545, 569, 574
TaqI	TCGA	2 cut(s)	177, 675
TasI	AATT	3 cut(s)	47, 822, 950
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	3 cut(s)	457, 503, 636
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	3 cut(s)	398, 579, 928
TseFI	GTSAC	2 cut(s)	508, 574
TseI	GCWGC	3 cut(s)	707, 710, 977
Tsp45I	GTSAC	2 cut(s)	508, 574
TspDTI	ATGAA	3 cut(s)	46, 757, 949
TspGWI	ACGGA	7 cut(s)	182, 296, 317, 457, 467, 496, 926
TspRI	CASTG	3 cut(s)	398, 579, 928
VpaK11BI	GGWCC	2 cut(s)	793, 903
XapI	RAATTY	1 cut(s)	950
XceI	RCATGY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	96, 624
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.