Rorug03G0045500
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010689
Physical Location & Seq
Forward (+)
3520499 .. 3520846
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0045500.1

Sequence Viewer

Length: 348 bp
ATGGCGAAATTAGGACATATGATTCCTTTATACGTAAGTGATGATCATTCCAGCATTCATTGGGATGGTAGAGGCTTGCAAATGTTCATGAATGAGCAGTTGAAGAGAATATATTCAATGGGTAGCGAAATGTCAGCAATTCTTAAAGCCTCATCTGACCCAGCAAAATTGGTTTTGGATGCAATGCAAGGATTTTACCCTTCAAGTTCAACTCTGGACAACAAGGAGACTCATTTTGATTTGACAGTTATTAGAAGGAGTTGTATTCTTTTGTTAGAGGATTTCAAGAGAATGTTACCACAAATTAATGCTCGGGTGAGAAACGAAGCAATAAAAGTTGGCGGCTGA

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

7.91

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 22 - 113 2.3e-18 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010689)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01850 AT5G01850
fragaria_vesca FvH4_6g10040
malus_domestica MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica Prupe.6G292000_v2.0.a1
pyrus_communis pycom04g15310
rosa_chinensis RchiOBHm_Chr3g0460721
rosa_laevigata RLG00000024985
rosa_multiflora Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii Rroxscaffold_6G00419270
rosa_rugosa Rorug03G0045400 Rorug03G0045500
rosa_samantha Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana Rw3G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 342
AgsI TTSAA 5 cut(s) 103, 117, 204, 210, 286
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 312
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 312
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 312
BmsI GCATC 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 2 cut(s) 70, 184
BseMI GCAATG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 312
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 342
BspHI TCATGA 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 189
BssMI GATC 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 77
BstF5I GGATG 2 cut(s) 70, 184
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 43
BstSNI TACGTA 1 cut(s) 34
BtsCI GGATG 2 cut(s) 70, 184
Cac8I GCNNGC 1 cut(s) 77
CciI TCATGA 1 cut(s) 87
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 75, 149, 345
CviKI_1 RGCY 3 cut(s) 75, 149, 345
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco105I TACGTA 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 312
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 18, 20, 31, 89, 112
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 2 cut(s) 77, 191
Fsp4HI GCNGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 343
GsaI CCCAGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 91
HinfI GANTC 2 cut(s) 22, 229
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 88, 215, 286
HpyAV CCTTC 2 cut(s) 210, 249
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 79, 182, 187
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 64, 174, 200
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 294
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 115
MluCI AATT 4 cut(s) 8, 138, 167, 303
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 3 cut(s) 65, 160, 271
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 2 cut(s) 144, 306
MslI CAYNNNNRTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 54
NdeI CATATG 1 cut(s) 18
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 91
PagI TCATGA 1 cut(s) 87
PctI GAATGC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
Ppu21I YACGTR 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 2 cut(s) 144, 306
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 223
SetI ASST 1 cut(s) 36
SfaNI GCATC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 63
SnaBI TACGTA 1 cut(s) 34
Sse9I AATT 4 cut(s) 8, 138, 167, 303
SsiI CCGC 1 cut(s) 342
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 36
TasI AATT 4 cut(s) 8, 138, 167, 303
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 144, 306
Tru9I TTAA 2 cut(s) 144, 306
TspDTI ATGAA 3 cut(s) 47, 76, 104
VspI ATTAAT 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.