Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010689

Physical Location & Seq

Genomic Coordinates Forward (+)

18211211 .. 18214255

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGTTGCAGCGTGAGGAGCGGCGGAAGAGAAGGGAGGGAGCGCGAGCAAGCCGTTTTGAGGAAGTCCGTGGATGTCGAGACCAACTCGGGCTCGCAGAATGGTTTGATTGCTGCCCAGCAGCTGACAATTGACGAGAATTTGCTGGTGGACCCGAAATTGTTGTTTATCGGGGCGAAAATTGGTGAGGGAGCACATGGCAAGGTTTATGAAGGAAGATACGGTGATCGAATTGTTGCTGTCAAAGTCCTCCATCGTGGGAGCACTACTGAAGAAAGAGCTGCGCTTGAGAGTCGTTTTGCCCGTGAAGTTAATATGATGTCCCGAGTAAAACACGAAAATCTTGTTAAGTTTATTGGAGCTTGTAAGGAGCCGCTTATGGTGATAGTTACTGAGCTATTACCTGGGATGTCACTTAGGAAGTACCTGATGAGTATTCGTCCAAATCCATTAGAACTCCACGTAGCCATTAAATTTTCTCTTGACATCGCTCACGCTATGGAATGTTTACATGCCAATGGGATCGTTCATAGAGATCTAAAGCCGGACAATTTGTTGCTTACGGCGAATCAGAAACATGTAAAGCTTGCAGATTTTGGTCTTGCAAGAGAAGAAACGGTTACAGAGATGATGACAGCAGAAACTGGGACTTACCGCTGGATGGCTCCTGAGCTGTATAGCACAGTAACTTTGCGACAGGGAGAGAAGAAGCATTACAATAACAAGGTCGATGTATATAGTTTTGGGATTGTCTTATGGGAATTATTGACTAACCGCATGCCCTTCGAAGGCATGTCCAATTTGCAGGCCGCTTATGCTGCTGCTTTCAAGCAAGAGAGGCCTCTACTTCCGGAGGACATATCGCCCGATCTTGCATTTATCATTCAGTCCTGTTGGGTTGAGGACCCCAATCTAAGGCCTACGTTCAGCCAGATCATCCGCATGCTCAATTCGTTCCTCTTCAAACTCTTACCACCCTCACCGCCGATACCAGACACTGACATGAAAGAAGCAGCAGCAAGTAACGGTACCATGACTGAATTATCTGCCAGGACAAGAGGGAAGTTCGCTTTCCTCAGGCAACTGTTCAATGCCAAGAGGACCAAGAGCTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.81

Weight (kDa)

8.9

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	58 - 316	5.9e-59	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	59 - 314	1.8e-54	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010689)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01850 AT5G01850
fragaria_vesca	FvH4_6g10040
malus_domestica	MD04G1173100.v1.1 MD12G1186500.v1.1
prunus_persica	Prupe.6G292000_v2.0.a1
pyrus_communis	pycom04g15310
rosa_chinensis	RchiOBHm_Chr3g0460721
rosa_laevigata	RLG00000024985
rosa_multiflora	Rmu_sc0003662.1_g000003 Rmu_sc0011069.1_g000006 Rmu_sc0036518.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419270
rosa_rugosa	Rorug03G0045400 Rorug03G0045500
rosa_samantha	Rh3AG103000 Rh3BG106700 Rh3CG108500 Rh3DG108200
rosa_wichuraiana	Rw3G008770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccBSI	CCGCTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	45
AccIII	TCCGGA	1 cut(s)	850
AciI	CCGC	8 cut(s)	21, 24, 374, 655, 775, 810, 940, 983
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	139, 473
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	425, 1030
AfiI	CCNNNNNNNGG	4 cut(s)	60, 661, 788, 915
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	829, 964, 1090
AjnI	CCWGG	2 cut(s)	403, 1049
AluBI	AGCT	7 cut(s)	124, 281, 362, 397, 586, 673, 1110
AluI	AGCT	7 cut(s)	124, 281, 362, 397, 586, 673, 1110
Alw21I	GWGCWC	3 cut(s)	196, 266, 1112
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	3 cut(s)	124, 644, 998
Ama87I	CYCGRG	2 cut(s)	88, 324
Aor13HI	TCCGGA	1 cut(s)	850
AoxI	GGCC	3 cut(s)	807, 839, 917
ApeKI	GCWGC	8 cut(s)	9, 113, 121, 281, 818, 821, 1013, 1016
ApoI	RAATTY	2 cut(s)	139, 473
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	45, 286
AspS9I	GGNCC	3 cut(s)	151, 904, 1101
AsuHPI	GGTGA	4 cut(s)	197, 236, 394, 972
AsuII	TTCGAA	1 cut(s)	786
AvaI	CYCGRG	2 cut(s)	88, 324
AvaII	GGWCC	3 cut(s)	151, 904, 1101
AxyI	CCTNAGG	1 cut(s)	1076
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	2 cut(s)	95, 1112
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
Bbv12I	GWGCWC	3 cut(s)	196, 266, 1112
BbvI	GCAGC	8 cut(s)	21, 100, 133, 268, 805, 808, 1025, 1028
BccI	CCATC	2 cut(s)	261, 655
BceAI	ACGGC	2 cut(s)	38, 579
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BciT130I	CCWGG	2 cut(s)	405, 1051
BcoDI	GTCTC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	405, 1051
Bme18I	GGWCC	3 cut(s)	151, 904, 1101
BmeT110I	CYCGRG	2 cut(s)	88, 324
BmgT120I	GGNCC	3 cut(s)	151, 904, 1101
BmiI	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
BmrFI	CCNGG	2 cut(s)	405, 1051
BmrI	ACTGGG	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	654
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	69, 404
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 661, 788, 915
Bse1I	ACTGG	1 cut(s)	649
Bse21I	CCTNAGG	1 cut(s)	1076
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	2 cut(s)	405, 1051
BseDI	CCNNGG	2 cut(s)	69, 404
BseGI	GGATG	4 cut(s)	79, 414, 666, 936
BseLI	CCNNNNNNNGG	4 cut(s)	60, 661, 788, 915
BseMII	CTCAG	3 cut(s)	384, 660, 1090
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	8 cut(s)	21, 100, 133, 268, 805, 808, 1025, 1028
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	3 cut(s)	809, 841, 919
BshNI	GGYRCC	1 cut(s)	1028
BsiHKAI	GWGCWC	3 cut(s)	196, 266, 1112
BsiHKCI	CYCGRG	2 cut(s)	88, 324
BsiSI	CCGG	2 cut(s)	545, 851
BslFI	GGGAC	2 cut(s)	307, 661
BslI	CCNNNNNNNGG	4 cut(s)	60, 661, 788, 915
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	307, 661
BsnI	GGCC	3 cut(s)	809, 841, 919
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	2 cut(s)	88, 324
Bsp119I	TTCGAA	1 cut(s)	786
Bsp1286I	GDGCHC	4 cut(s)	95, 196, 266, 1112
Bsp13I	TCCGGA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	226, 522, 535, 868, 933
BspACI	CCGC	8 cut(s)	21, 24, 374, 655, 775, 810, 940, 983
BspANI	GGCC	3 cut(s)	809, 841, 919
BspCNI	CTCAG	3 cut(s)	385, 661, 1089
BspEI	TCCGGA	1 cut(s)	850
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	1028
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	2 cut(s)	69, 404
BssMI	GATC	5 cut(s)	226, 522, 535, 868, 933
Bst2UI	CCWGG	2 cut(s)	405, 1051
Bst4CI	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
Bst6I	CTCTTC	2 cut(s)	22, 965
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	786
BstC8I	GCNNGC	7 cut(s)	47, 51, 95, 588, 779, 807, 944
BstDEI	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	4 cut(s)	79, 414, 666, 936
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	45, 286
BstKTI	GATC	5 cut(s)	229, 525, 538, 871, 936
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	226, 522, 535, 868, 933
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
BstNI	CCWGG	2 cut(s)	405, 1051
BstNSI	RCATGY	5 cut(s)	515, 581, 781, 796, 946
BstSCI	CCNGG	2 cut(s)	403, 1049
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	8 cut(s)	21, 100, 133, 268, 805, 808, 1025, 1028
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	1076
BsuRI	GGCC	3 cut(s)	809, 841, 919
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	4 cut(s)	79, 414, 666, 936
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	7 cut(s)	47, 51, 95, 588, 779, 807, 944
CaiI	CAGNNNCTG	3 cut(s)	124, 644, 998
CfoI	GCGC	2 cut(s)	45, 286
Cfr13I	GGNCC	3 cut(s)	151, 904, 1101
Csp6I	GTAC	2 cut(s)	424, 1029
CviAII	CATG	8 cut(s)	197, 512, 578, 778, 793, 943, 1003, 1033
CviQI	GTAC	2 cut(s)	424, 1029
DdeI	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
DpnI	GATC	5 cut(s)	228, 524, 537, 870, 935
DpnII	GATC	5 cut(s)	226, 522, 535, 868, 933
Eam1104I	CTCTTC	2 cut(s)	22, 965
EarI	CTCTTC	2 cut(s)	22, 965
EciI	GGCGGA	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	1110
Eco147I	AGGCCT	2 cut(s)	841, 919
Eco24I	GRGCYC	2 cut(s)	95, 1112
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	3 cut(s)	151, 904, 1101
Eco53kI	GAGCTC	1 cut(s)	1110
Eco57I	CTGAAG	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	1076
Eco88I	CYCGRG	2 cut(s)	88, 324
EcoICRI	GAGCTC	1 cut(s)	1110
EcoO109I	RGGNCCY	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	403, 1049
EcoT38I	GRGCYC	2 cut(s)	95, 1112
FaeI	CATG	8 cut(s)	200, 515, 581, 781, 796, 946, 1006, 1036
FaqI	GGGAC	2 cut(s)	307, 661
FatI	CATG	8 cut(s)	196, 511, 577, 777, 792, 942, 1002, 1032
FokI	GGATG	4 cut(s)	86, 421, 673, 923
FriOI	GRGCYC	2 cut(s)	95, 1112
GlaI	GCGC	2 cut(s)	44, 285
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	3 cut(s)	809, 841, 919
HapII	CCGG	2 cut(s)	545, 851
HhaI	GCGC	2 cut(s)	45, 286
Hin1II	CATG	8 cut(s)	200, 515, 581, 781, 796, 946, 1006, 1036
Hin6I	GCGC	2 cut(s)	43, 284
HinP1I	GCGC	2 cut(s)	43, 284
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	292, 568
HpaII	CCGG	2 cut(s)	545, 851
HphI	GGTGA	4 cut(s)	197, 236, 394, 972
Hpy166II	GTNNAC	2 cut(s)	151, 509
Hpy188I	TCNGA	1 cut(s)	573
Hpy188III	TCNNGA	5 cut(s)	79, 324, 482, 668, 851
Hpy8I	GTNNAC	2 cut(s)	151, 509
HpyAV	CCTTC	4 cut(s)	26, 206, 782, 793
HpyCH4III	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
HpyCH4IV	ACGT	2 cut(s)	462, 923
HpyCH4V	TGCA	5 cut(s)	9, 590, 605, 805, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
HpyF3I	CTNAG	5 cut(s)	393, 416, 669, 914, 1076
HpySE526I	ACGT	2 cut(s)	462, 923
Hsp92II	CATG	8 cut(s)	200, 515, 581, 781, 796, 946, 1006, 1036
HspAI	GCGC	2 cut(s)	43, 284
Kpn2I	TCCGGA	1 cut(s)	850
KpnI	GGTACC	1 cut(s)	1032
Kzo9I	GATC	5 cut(s)	226, 522, 535, 868, 933
LmnI	GCTCC	7 cut(s)	18, 40, 191, 261, 359, 370, 670
Lsp1109I	GCAGC	8 cut(s)	21, 100, 133, 268, 805, 808, 1025, 1028
MaeII	ACGT	2 cut(s)	462, 923
MaeIII	GTNAC	5 cut(s)	388, 411, 619, 685, 1022
MalI	GATC	5 cut(s)	228, 524, 537, 870, 935
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	5 cut(s)	226, 522, 535, 868, 933
MboII	GAAGA	6 cut(s)	39, 228, 284, 623, 718, 952
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	4 cut(s)	95, 196, 266, 1112
MlyI	GAGTC	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	3 cut(s)	312, 348, 471
MslI	CAYNNNNRTG	3 cut(s)	516, 941, 1001
MspA1I	CMGCKG	2 cut(s)	124, 657
MspI	CCGG	2 cut(s)	545, 851
MspR9I	CCNGG	2 cut(s)	405, 1051
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	405, 1051
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	18, 815, 818, 838
NdeII	GATC	5 cut(s)	226, 522, 535, 868, 933
NlaIII	CATG	8 cut(s)	200, 515, 581, 781, 796, 946, 1006, 1036
NlaIV	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
NmuCI	GTSAC	1 cut(s)	411
NspI	RCATGY	5 cut(s)	515, 581, 781, 796, 946
NspV	TTCGAA	1 cut(s)	786
PaeI	GCATGC	2 cut(s)	781, 946
PceI	AGGCCT	2 cut(s)	841, 919
PciI	ACATGT	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	904
PscI	ACATGT	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	1112
Psp5II	RGGWCCY	1 cut(s)	904
Psp6I	CCWGG	2 cut(s)	403, 1049
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	403, 1049
PspN4I	GGNNCC	5 cut(s)	153, 372, 666, 906, 1030
PspPI	GGNCC	3 cut(s)	151, 904, 1101
PspPPI	RGGWCCY	1 cut(s)	904
PstNI	CAGNNNCTG	3 cut(s)	124, 644, 998
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	425, 1030
RsaNI	GTAC	2 cut(s)	424, 1029
RseI	CAYNNNNRTG	3 cut(s)	516, 941, 1001
SacI	GAGCTC	1 cut(s)	1112
SaqAI	TTAA	3 cut(s)	312, 348, 471
Sau3AI	GATC	5 cut(s)	226, 522, 535, 868, 933
Sau96I	GGNCC	3 cut(s)	151, 904, 1101
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	405, 1051
SduI	GDGCHC	4 cut(s)	95, 196, 266, 1112
SfuI	TTCGAA	1 cut(s)	786
SinI	GGWCC	3 cut(s)	151, 904, 1101
SmiMI	CAYNNNNRTG	3 cut(s)	516, 941, 1001
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SphI	GCATGC	2 cut(s)	781, 946
SseBI	AGGCCT	2 cut(s)	841, 919
SsiI	CCGC	8 cut(s)	21, 24, 374, 655, 775, 810, 940, 983
SstI	GAGCTC	1 cut(s)	1112
StuI	AGGCCT	2 cut(s)	841, 919
StyD4I	CCNGG	2 cut(s)	403, 1049
TaaI	ACNGT	6 cut(s)	224, 619, 685, 1028, 1086, 1116
TaiI	ACGT	2 cut(s)	465, 926
TaqI	TCGA	4 cut(s)	78, 229, 729, 786
TauI	GCSGC	3 cut(s)	24, 376, 812
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	3 cut(s)	312, 348, 471
Tru9I	TTAA	3 cut(s)	312, 348, 471
TscAI	CASTG	1 cut(s)	1003
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	8 cut(s)	9, 113, 121, 281, 818, 821, 1013, 1016
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	3 cut(s)	225, 518, 1019
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	151, 904, 1101
XapI	RAATTY	2 cut(s)	139, 473
XceI	RCATGY	5 cut(s)	515, 581, 781, 796, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.