FvH4_6g10791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014624
Physical Location & Seq
Reverse (-)
6469076 .. 6469755
680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10791.t1

Sequence Viewer

Length: 567 bp
ATGGATGATGTTATCCCACAATCTGAGAGCCTGAGCCTGAGGATTCCGTCCAATCATAGCCCAAAAGGTGATCATGAAGCTAATGGAGGTGAAGGGAAAGCAGAAGTTGCTAGCTTGAGCTCTGGAGCTGGAGAAAATGGTGGAGATCATAAAGAAGGTGGTGAAGATGGAGAAAAGAGTGGTGGGCTTATAACCAGCTTCATCTCCAACTTGGTGTCGCCAAGGAGTACTAAATCCGGGGAGTTTACTAAGCGAAAAGTTGAAGATGAAGTTGAGACCGGTGAGATAGTGAATGGTAAGACAGAGCAAGATTTGGGTCGTGGTGAAAATGGTGGAGGTGTGATTTCAAGCATGATTTCCAACTTCTTCAATCCAAGTGAGGAAGAGAAAATAGTAGAGGAGGTGAAAGATGGTGGAAATAAGAGGTTGAAGATGGATGAGGAGGAAGGAGGTAAAGGAGGCCTTATTGATAACATTGTCTCTCACTTGCCTGCATCAATTCCAGATGATGCAGCTCCCTCAACTGATGAGGCCTCCATTCTTATTCATTCCTGTGTCAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

19.66

Weight (kDa)

4.56

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51750 AT3G51750 AT3G51750
fragaria_vesca FvH4_6g10791
malus_domestica MD12G1178300.v1.1
prunus_persica Prupe.6G283500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461831
rosa_laevigata RLG00000024894
rosa_multiflora Rmu_co8428109.1_g000001 Rmu_sc0004308.1_g000015
rosa_roxburghii Rroxscaffold_6G00417880
rosa_rugosa Rorug03G0054000
rosa_samantha Rh3AG112100 Rh3BG115400 Rh3CG117500 Rh3DG117100
rosa_wichuraiana Rw3G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AfaI GTAC 1 cut(s) 229
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 263, 348, 370, 430
AluBI AGCT 6 cut(s) 80, 114, 120, 128, 198, 515
AluI AGCT 6 cut(s) 80, 114, 120, 128, 198, 515
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 269, 484
AoxI GGCC 2 cut(s) 460, 531
ApeKI GCWGC 1 cut(s) 512
AsiGI ACCGGT 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 6 cut(s) 80, 101, 173, 293, 335, 415
AsuNHI GCTAGC 1 cut(s) 110
AxyI CCTNAGG 1 cut(s) 38
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 524
BccI CCATC 3 cut(s) 161, 404, 427
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 269, 484
BfaI CTAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 499, 503
BmtI GCTAGC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 144, 150
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 221, 237
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 221, 237
BseGI GGATG 2 cut(s) 10, 442
BseMII CTCAG 3 cut(s) 15, 23, 29
BseRI GAGGAG 2 cut(s) 413, 455
BseXI GCAGC 1 cut(s) 524
BshFI GGCC 2 cut(s) 462, 533
BshTI ACCGGT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 237, 279
BsmAI GTCTC 2 cut(s) 269, 484
BsnI GGCC 2 cut(s) 462, 533
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 70, 145
BspANI GGCC 2 cut(s) 462, 533
BspCNI CTCAG 3 cut(s) 16, 24, 30
BspHI TCATGA 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 221, 237
BssMI GATC 2 cut(s) 70, 145
BssT1I CCWWGG 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 112, 492
BstDEI CTNAG 4 cut(s) 24, 32, 38, 249
BstF5I GGATG 2 cut(s) 10, 442
BstKTI GATC 2 cut(s) 73, 148
BstMAI GTCTC 2 cut(s) 269, 484
BstMBI GATC 2 cut(s) 70, 145
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 2 cut(s) 462, 533
BtsCI GGATG 2 cut(s) 10, 442
Cac8I GCNNGC 2 cut(s) 112, 492
CciI TCATGA 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 278
Csp6I GTAC 1 cut(s) 228
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 2 cut(s) 74, 352
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 4 cut(s) 24, 32, 38, 249
DpnI GATC 2 cut(s) 72, 147
DpnII GATC 2 cut(s) 70, 145
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 2 cut(s) 462, 533
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 120
Eco81I CCTNAGG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 77, 355
FaiI YATR 5 cut(s) 57, 75, 150, 191, 353
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FatI CATG 2 cut(s) 73, 351
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 2 cut(s) 17, 449
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 111
GluI GCNGC 1 cut(s) 513
GsuI CTGGAG 2 cut(s) 144, 150
HaeIII GGCC 2 cut(s) 462, 533
HapII CCGG 2 cut(s) 237, 279
Hin1II CATG 2 cut(s) 77, 355
HinfI GANTC 1 cut(s) 43
HpaII CCGG 2 cut(s) 237, 279
HphI GGTGA 6 cut(s) 80, 101, 173, 293, 335, 415
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 74, 123, 503
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 3 cut(s) 86, 149, 440
HpyCH4V TGCA 2 cut(s) 494, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 4 cut(s) 24, 32, 38, 249
Hsp92II CATG 2 cut(s) 77, 355
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 145
LmnI GCTCC 2 cut(s) 125, 520
LpnPI CCDG 9 cut(s) 44, 50, 108, 114, 208, 250, 292, 504, 516
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 499, 503
MaeI CTAG 1 cut(s) 111
MalI GATC 2 cut(s) 72, 147
MboI GATC 2 cut(s) 70, 145
MboII GAAGA 5 cut(s) 176, 275, 358, 395, 442
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 1 cut(s) 498
MmeI TCCRAC 2 cut(s) 231, 384
MseI TTAA 1 cut(s) 565
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 2 cut(s) 237, 279
MspR9I CCNGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 70, 145
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 2 cut(s) 77, 355
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 2 cut(s) 462, 533
PfeI GAWTC 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 122
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 565
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 2 cut(s) 70, 145
ScaI AGTACT 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 2 cut(s) 499, 503
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 498
SseBI AGGCCT 2 cut(s) 462, 533
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 2 cut(s) 462, 533
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 221
TasI AATT 1 cut(s) 498
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 565
Tru9I TTAA 1 cut(s) 565
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 90, 190, 282, 536
TspGWI ACGGA 1 cut(s) 36
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.