RLG00000024894

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
40117289 .. 40117981
693 bp
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UTR
Exon/CDS
Intron
RLM00000024894

Sequence Viewer

Length: 585 bp
ATGGATGATGTTATACCACAATCCGAGAGCCACGACCTGACAACTCCTTCAAATCATAACCCAAAAGGTGATGAAGCTAAAGGAGAAGGAGGGAGGGTAGGTAATGGGTTCATCAGCAACCTGAAAATCCCTACTGTGAGCTCTGGAGCTGAAGAACATGGTGGAGATAGAGAAGGTGGTGAAGATGAAGAAAAGGGTGGTGGGCTTATAACCAACTTCATCTCCAACTTGGTGTCACCAAGGAGCACTAAAGCAGGGGAGGTTACTAAGCGAAAAGTTGAAGATGAAGTTGAAGCTGGTGAGATAGTTAATGGTAAGACAGAGCAAGATGTGGGTGGTGGTGAAAATGGTGGAGGGGTGATTTCAAACATCATTTCCAACTTTTTTCATCCAAGTGAGGAAGAGAAAGAAGGAGAGAATGTGAAAGATGGTGGAAATAAAAGGCTGAAGATGGATGAGGAGGTAGGAGGTAAAGGAGGCCTCATTGAAAACATTGTCTCTCACTTGCCTACATCAATTCCAGATGATGCAGCTCCAACAGCTGATGAGGCCTCCATTCTTATTCACTCCATTGTCAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.29

Weight (kDa)

4.58

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014624)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 171, 467
AgsI TTSAA 5 cut(s) 51, 281, 293, 366, 488
AluBI AGCT 6 cut(s) 77, 141, 149, 296, 533, 542
AluI AGCT 6 cut(s) 77, 141, 149, 296, 533, 542
Alw21I GWGCWC 2 cut(s) 143, 248
Alw26I GTCTC 1 cut(s) 502
AoxI GGCC 2 cut(s) 478, 549
ApeKI GCWGC 1 cut(s) 530
AsuHPI GGTGA 6 cut(s) 80, 191, 228, 311, 353, 370
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 143, 248
BbvI GCAGC 1 cut(s) 542
BccI CCATC 2 cut(s) 422, 445
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 583
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
BmsI GCATC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 8 cut(s) 81, 85, 111, 115, 206, 236, 405, 435
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 10, 388, 460
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 542
BshFI GGCC 2 cut(s) 480, 551
BsiHKAI GWGCWC 2 cut(s) 143, 248
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 2 cut(s) 480, 551
Bsp1286I GDGCHC 2 cut(s) 143, 248
BspANI GGCC 2 cut(s) 480, 551
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 10, 388, 460
BstMAI GTCTC 1 cut(s) 502
BstMWI GCNNNNNNNGC 2 cut(s) 539, 548
BstV1I GCAGC 1 cut(s) 542
BsuRI GGCC 2 cut(s) 480, 551
BtsCI GGATG 3 cut(s) 10, 388, 460
CviAII CATG 1 cut(s) 158
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 2 cut(s) 480, 551
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 2 cut(s) 171, 467
EcoICRI GAGCTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 14, 57, 159, 209
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 3 cut(s) 17, 375, 467
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 583
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 480, 551
Hin1II CATG 1 cut(s) 161
HphI GGTGA 6 cut(s) 80, 191, 228, 311, 353, 370
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 144, 521
HpyAV CCTTC 4 cut(s) 57, 80, 167, 404
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 539, 548
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 161
LmnI GCTCC 3 cut(s) 146, 243, 538
LpnPI CCDG 6 cut(s) 50, 129, 134, 240, 282, 534
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 583
MaeIII GTNAC 2 cut(s) 234, 262
MboII GAAGA 6 cut(s) 164, 194, 200, 293, 413, 460
MhlI GDGCHC 2 cut(s) 143, 248
MluCI AATT 1 cut(s) 516
MmeI TCCRAC 3 cut(s) 249, 402, 560
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 539, 548
NlaIII CATG 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 234
PceI AGGCCT 2 cut(s) 480, 551
PkrI GCNGC 1 cut(s) 532
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 542
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 531
SduI GDGCHC 2 cut(s) 143, 248
SfaNI GCATC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 1 cut(s) 516
SseBI AGGCCT 2 cut(s) 480, 551
SspMI CTAG 1 cut(s) 583
SstI GAGCTC 1 cut(s) 143
StuI AGGCCT 2 cut(s) 480, 551
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 136
TasI AATT 1 cut(s) 516
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 87, 100, 201, 208, 300, 377
XspI CTAG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.