Rh3CG117500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
9483205 .. 9483765
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG117500.1

Sequence Viewer

Length: 561 bp
ATGGATGATGTTATACCACAATCCGAGAGCCACGACCTAACAACTCCTTCAAATCATAACCCAAAAGGTGATGAAGCTAAAGGAGAAGGAGGGAGAGTAGGTAATGGGTTCATCAGCAACCTGAAAATCTCTACTTTGAGCTCTGGAGCTGAAGAACATGGTGGAGATGGAGAAGGTGGTGAAGATGAAGGAAAGGGTGGTGGGCTTATAACCAACTTCATCTCCAACTTGGTGTCACCAAGGAGTACTAAAGCAGGGGAGGTTACTAAGCGAAAAGTTGAAGATGAAGTTGAAGCTGGTGAGATAGTTAATGGTCAGACAGAGCAAGATGTGGGTGGTGGTGAAAATGGTGGAGGGGTGATTTCAAACATCATTTCCAACTTCTTTCATGCAAGTGAGGAAGAGAAAGAAGGAGAGAAGGTGAAAGATGGTGGAAATAAAAGGTTGAAGATGGAGGAGGAGGAAGGAGGTAAGGGAGGCCTCATTGAAAACATTGTCTCTCACTTGCCTACATCAATTCCAGGTTGGTCAATCTCTTCTCTGAAGCTTTCTGGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.27

Weight (kDa)

4.67

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014624)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 6 cut(s) 51, 281, 293, 366, 448, 488
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 5 cut(s) 77, 141, 149, 296, 547
AluI AGCT 5 cut(s) 77, 141, 149, 296, 547
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 502
AoxI GGCC 1 cut(s) 478
AsuHPI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 3 cut(s) 161, 422, 445
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 8 cut(s) 81, 85, 111, 115, 206, 236, 405, 435
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 470, 473
BshFI GGCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 143
BspANI GGCC 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 522
Bst6I CTCTTC 2 cut(s) 396, 541
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 502
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BsuRI GGCC 1 cut(s) 480
BtsCI GGATG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 158, 389
CviJI RGCY 8 cut(s) 30, 77, 141, 149, 205, 296, 480, 547
CviKI_1 RGCY 8 cut(s) 30, 77, 141, 149, 205, 296, 480, 547
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 396, 541
EarI CTCTTC 2 cut(s) 396, 541
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 2 cut(s) 161, 392
FaiI YATR 5 cut(s) 14, 57, 159, 209, 390
FatI CATG 2 cut(s) 157, 388
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 480
Hin1II CATG 2 cut(s) 161, 392
HindIII AAGCTT 1 cut(s) 545
HphI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
Hpy188I TCNGA 3 cut(s) 25, 318, 543
Hpy188III TCNNGA 1 cut(s) 144
HpyAV CCTTC 7 cut(s) 57, 80, 167, 182, 404, 412, 458
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 161, 392
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 7 cut(s) 129, 134, 240, 282, 507, 534, 537
MaeIII GTNAC 2 cut(s) 234, 262
MboII GAAGA 6 cut(s) 164, 194, 293, 413, 460, 528
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 249, 402
MseI TTAA 2 cut(s) 309, 559
MslI CAYNNNNRTG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
NlaIII CATG 2 cut(s) 161, 392
NmuCI GTSAC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 309, 559
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 1 cut(s) 516
SseBI AGGCCT 1 cut(s) 480
SstI GAGCTC 1 cut(s) 143
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 239
TasI AATT 1 cut(s) 516
TatI WGTACW 1 cut(s) 245
Tru1I TTAA 2 cut(s) 309, 559
Tru9I TTAA 2 cut(s) 309, 559
TseFI GTSAC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 87, 100, 201, 208, 300, 377
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.