Rroxscaffold_6G00417880

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
39466747 .. 39467462
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417880.1

Sequence Viewer

Length: 621 bp
ATGGATGATGTTATACCACAATCCGAGAGCCACGACCTGACAATTCCTTCAAATCATAGCCCAAAAGGTGATGAAGCTAAAGGAGAAGGAGGAGACAACCTGAAAATCCCTACTTTGAGCTCTGGAGCTGAAGAACATGGTGGAGATGGAGAAGGTGGTGAAGATGAAGAAAAGGGTGGTGGGCTTATAACCAACTTCATCTCCAACTTGGTGTCACCAAGGAGTACTAAAGCAGGGGAGGTTACTAAGCGAAAAGTTGAAGATGAAGTTGAAGCTGGTGAGATAGTAAATGGTAAGACAGAGCAAGATGTGGGTGGTGGTGAAAATGGTGGAGGGGTGATTTCAAACATCATTTCCAACTTCTTTCATCCAAGTGAGGAAGAGAAAGAAGGAGAGAAGGTGAAAGATGGTGGAAATAAAAGGTTGAAGATGGATGAGGAGGAAGGAGGTAAAGGAGGCCTCATTGAAAACATTGTCTCTCACTTGCCTACATCAATTCCAGGTCGGTCAATCTCTTCTCTGAAGCTTTCTGGGATGATGCAGCTCCAACAACTGAAGAGGCCTCCATTCTTATTCACTCCATTGTCAAAGACTAGGCAGATCTTGGCCTCTACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

21.82

Weight (kDa)

4.83

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014624)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AcuI CTGAAG 3 cut(s) 150, 542, 575
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 6 cut(s) 51, 260, 272, 345, 427, 467
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 6 cut(s) 77, 120, 128, 275, 526, 544
AluI AGCT 6 cut(s) 77, 120, 128, 275, 526, 544
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 87, 481
AoxI GGCC 3 cut(s) 457, 560, 606
ApeKI GCWGC 1 cut(s) 541
AsuHPI GGTGA 7 cut(s) 80, 170, 207, 290, 332, 349, 412
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 140, 401, 424
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 87, 481
BfaI CTAG 1 cut(s) 594
BglII AGATCT 1 cut(s) 600
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 384, 414
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 4 cut(s) 10, 367, 439, 540
BseRI GAGGAG 2 cut(s) 105, 452
BseXI GCAGC 1 cut(s) 553
BshFI GGCC 3 cut(s) 459, 562, 608
BsiHKAI GWGCWC 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 87, 481
BsnI GGCC 3 cut(s) 459, 562, 608
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 600
BspANI GGCC 3 cut(s) 459, 562, 608
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 501
Bst6I CTCTTC 3 cut(s) 375, 520, 551
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 4 cut(s) 10, 367, 439, 540
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 2 cut(s) 87, 481
BstMBI GATC 1 cut(s) 600
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 3 cut(s) 459, 562, 608
BtsCI GGATG 4 cut(s) 10, 367, 439, 540
Csp6I GTAC 1 cut(s) 225
CviAII CATG 1 cut(s) 137
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
Eam1104I CTCTTC 3 cut(s) 375, 520, 551
EarI CTCTTC 3 cut(s) 375, 520, 551
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 218
Eco147I AGGCCT 2 cut(s) 459, 562
Eco24I GRGCYC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 150, 542, 575
EcoICRI GAGCTC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 140
FaiI YATR 4 cut(s) 14, 57, 138, 188
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 4 cut(s) 17, 354, 446, 547
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 542
FspBI CTAG 1 cut(s) 594
GluI GCNGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 3 cut(s) 459, 562, 608
Hin1II CATG 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 524
HphI GGTGA 7 cut(s) 80, 170, 207, 290, 332, 349, 412
Hpy188I TCNGA 2 cut(s) 25, 522
Hpy188III TCNNGA 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 57, 80, 146, 383, 391, 437
HpyCH4V TGCA 1 cut(s) 541
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 600
LmnI GCTCC 2 cut(s) 125, 549
LpnPI CCDG 8 cut(s) 50, 108, 113, 219, 261, 486, 513, 516
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 1 cut(s) 528
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 213, 241
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 8 cut(s) 143, 173, 179, 272, 392, 439, 507, 568
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 42, 495
MmeI TCCRAC 3 cut(s) 228, 381, 571
MslI CAYNNNNRTG 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
NdeII GATC 1 cut(s) 600
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 213
PceI AGGCCT 2 cut(s) 459, 562
PkrI GCNGC 1 cut(s) 543
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 600
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 122
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 1 cut(s) 600
ScaI AGTACT 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 2 cut(s) 42, 495
SseBI AGGCCT 2 cut(s) 459, 562
SspMI CTAG 1 cut(s) 594
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 2 cut(s) 459, 562
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 218
TaqII GACCGA 1 cut(s) 495
TasI AATT 2 cut(s) 42, 495
TatI WGTACW 1 cut(s) 224
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 87, 180, 187, 279, 356
XspI CTAG 1 cut(s) 594
ZrmI AGTACT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.