Rh3BG115400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
9497229 .. 9498737
1509 bp
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UTR
Exon/CDS
Intron
Rh3BG115400.1

Sequence Viewer

Length: 576 bp
ATGGATGATGTTATACCACAATCCGAGAGCCACGACCTAACAACTCCTTCAAATCATAACCCAAAAGGTGATGAAGCTAAAGGAGAAGGAGGGAGAGTAGGTAATGGGTTCATCAGCAACCTGAAAATCTCTACTTTGAGCTCTGGAGCTGAAGAACATGGTGGAGATGGAGAAGGTGGTGAAGATGAAGGAAAGGGTGGTGGGCTTATAACCAACTTCATCTCCAATTTGGTGTCACCAAGGAGTACTAAAGCAGGGGAGGTTACTAAGCGAAAAGTTGAAGATGAAGTTGAAGCTGGTGAGATAGTTAATGGTCAGACAGAGCAAGATGTGGGTGGTGGTGAAAATGGTGGAGGGGTGATTTCAAACATCATTTCCAACTTCTTTCATGCAAGTGAGGAAGAGAAAGAAGGAGAGAAGGTGAAAGATGGTGGAAATAAAAGGTTGAAGATGGAGGAGGAGGAAGGAGGTAAGGGAAGCCTCATTGAAAACATTGTCTCTCACTTGCCTACATCAATTCCAGCTCCAACAACTGATGAGGCCTCCATTCTTATTCACTCCATTGTCAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

19.92

Weight (kDa)

4.62

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014624)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 6 cut(s) 51, 281, 293, 366, 448, 488
AluBI AGCT 5 cut(s) 77, 141, 149, 296, 524
AluI AGCT 5 cut(s) 77, 141, 149, 296, 524
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 502
AoxI GGCC 1 cut(s) 540
AsuHPI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BccI CCATC 3 cut(s) 161, 422, 445
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 574
BmcAI AGTACT 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 8 cut(s) 81, 85, 111, 115, 206, 236, 405, 435
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 470, 473
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 143
BspANI GGCC 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 502
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 158, 389
CviJI RGCY 9 cut(s) 30, 77, 141, 149, 205, 296, 480, 524, 542
CviKI_1 RGCY 9 cut(s) 30, 77, 141, 149, 205, 296, 480, 524, 542
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 2 cut(s) 161, 392
FaiI YATR 5 cut(s) 14, 57, 159, 209, 390
FatI CATG 2 cut(s) 157, 388
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 143
FspBI CTAG 1 cut(s) 574
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 542
Hin1II CATG 2 cut(s) 161, 392
HphI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
Hpy188I TCNGA 2 cut(s) 25, 318
Hpy188III TCNNGA 1 cut(s) 144
HpyAV CCTTC 7 cut(s) 57, 80, 167, 182, 404, 412, 458
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 161, 392
LmnI GCTCC 2 cut(s) 146, 529
LpnPI CCDG 5 cut(s) 129, 134, 240, 282, 534
MaeI CTAG 1 cut(s) 574
MaeIII GTNAC 2 cut(s) 234, 262
MboII GAAGA 5 cut(s) 164, 194, 293, 413, 460
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 226, 516
MmeI TCCRAC 2 cut(s) 402, 551
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 393
NlaIII CATG 2 cut(s) 161, 392
NmuCI GTSAC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 542
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 143
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 309
ScaI AGTACT 1 cut(s) 247
SduI GDGCHC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 226, 516
SseBI AGGCCT 1 cut(s) 542
SspMI CTAG 1 cut(s) 574
SstI GAGCTC 1 cut(s) 143
StuI AGGCCT 1 cut(s) 542
StyI CCWWGG 1 cut(s) 239
TasI AATT 2 cut(s) 226, 516
TatI WGTACW 1 cut(s) 245
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 234
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 87, 100, 201, 208, 300, 377
XspI CTAG 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.