FvH4_6g11010

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018456
Physical Location & Seq
Reverse (-)
6598030 .. 6599056
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11010.t1

Sequence Viewer

Length: 462 bp
ATGTTCCGAACCATGTCATCGAAGAAGATGATCACTCTGAAGAGCTTGGACGGACAGACTCTTGAGGTAGAAGAAGCGGTGGCGAAGAAGTCGCTTATGATCAAGAATATGATCGAGGACGACGATGTGATGGACGACGATGTTGAGGACGACGACGAAGACCATGTCGTTCATCTGCGGAAGGTGACTCACAAGGTTCTGGAAAAGGCCATGGAGTACTGCAAGAGGCACGTTGACGAAGACGAGAATAAGGTGGTGAACGAGAACGAGCTCAAGGCGTGGGATCAAGACTTTGTTGTCAAGACTGACAAATCCACCCTCTGCAATCTTCTTCTTGCTGCGTACTACTTGAACATCGAGAGCCTGCTGCTGCTGCTATCCAAGAACGCCTTTCATCACAAGACAAGTGAGGGGAAGAAGCCCATGGAGGATATGCGAATCCTTCTGGAATGTCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

154

Amino Acids

17.83

Weight (kDa)

4.97

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 9 - 78 1.9e-16 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018456)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11010
rosa_chinensis RchiOBHm_Chr3g0462321
rosa_laevigata RLG00000024867
rosa_multiflora Rmu_sc0009800.1_g000001
rosa_roxburghii Rroxscaffold_6G00417590
rosa_rugosa Rorug03G0055800
rosa_samantha Rh3BG117600 Rh3CG120400 Rh3DG119400
rosa_wichuraiana Rw3G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AciI CCGC 2 cut(s) 77, 178
AclWI GGATC 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 218, 344
AgsI TTSAA 1 cut(s) 352
AluBI AGCT 2 cut(s) 45, 271
AluI AGCT 2 cut(s) 45, 271
Alw21I GWGCWC 1 cut(s) 273
AlwI GGATC 1 cut(s) 291
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 338, 367, 370, 373
ArsI GACNNNNNNTTYG 2 cut(s) 150, 182
AsuHPI GGTGA 2 cut(s) 196, 268
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 2 cut(s) 165, 246
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 325, 354, 357, 360
BccI CCATC 1 cut(s) 124
BclI TGATCA 2 cut(s) 30, 99
BisI GCNGC 4 cut(s) 339, 368, 371, 374
BlsI GCNGC 4 cut(s) 340, 369, 372, 375
BmcAI AGTACT 1 cut(s) 218
BpiI GAAGAC 2 cut(s) 165, 246
BpuEI CTTGAG 2 cut(s) 83, 257
BsaJI CCNNGG 2 cut(s) 210, 423
BseDI CCNNGG 2 cut(s) 210, 423
BseXI GCAGC 4 cut(s) 325, 354, 357, 360
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 273
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 4 cut(s) 30, 99, 111, 283
Bsp19I CCATGG 2 cut(s) 210, 423
BspACI CCGC 2 cut(s) 77, 178
BspANI GGCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 291
BspQI GCTCTTC 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 210, 423
BssMI GATC 4 cut(s) 30, 99, 111, 283
BssT1I CCWWGG 2 cut(s) 210, 423
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 365
BstDSI CCRYGG 2 cut(s) 210, 423
BstKTI GATC 4 cut(s) 33, 102, 114, 286
BstMBI GATC 4 cut(s) 30, 99, 111, 283
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstV1I GCAGC 4 cut(s) 325, 354, 357, 360
BstV2I GAAGAC 2 cut(s) 165, 246
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 210, 423
Cac8I GCNNGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 217, 343
CviAII CATG 4 cut(s) 13, 164, 211, 424
CviJI RGCY 5 cut(s) 45, 209, 271, 363, 421
CviKI_1 RGCY 5 cut(s) 45, 209, 271, 363, 421
CviQI GTAC 2 cut(s) 217, 343
DpnI GATC 4 cut(s) 32, 101, 113, 285
DpnII GATC 4 cut(s) 30, 99, 111, 283
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 210, 423
Eco24I GRGCYC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 210, 423
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 210, 423
FaeI CATG 4 cut(s) 16, 167, 214, 427
FaiI YATR 7 cut(s) 14, 98, 110, 165, 212, 425, 434
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FatI CATG 4 cut(s) 12, 163, 210, 423
FbaI TGATCA 2 cut(s) 30, 99
Fnu4HI GCNGC 4 cut(s) 339, 368, 371, 374
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 4 cut(s) 339, 368, 371, 374
GluI GCNGC 4 cut(s) 339, 368, 371, 374
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 4 cut(s) 16, 167, 214, 427
HincII GTYRAC 2 cut(s) 235, 455
HindII GTYRAC 2 cut(s) 235, 455
HinfI GANTC 3 cut(s) 58, 187, 438
HphI GGTGA 2 cut(s) 196, 268
Hpy166II GTNNAC 3 cut(s) 235, 259, 455
Hpy188I TCNGA 2 cut(s) 8, 39
Hpy188III TCNNGA 7 cut(s) 62, 103, 200, 287, 301, 358, 446
Hpy8I GTNNAC 3 cut(s) 235, 259, 455
Hpy99I CGWCG 4 cut(s) 125, 140, 155, 158
HpyAV CCTTC 2 cut(s) 175, 452
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 222, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 16, 167, 214, 427
Ksp22I TGATCA 2 cut(s) 30, 99
Kzo9I GATC 4 cut(s) 30, 99, 111, 283
LguI GCTCTTC 1 cut(s) 35
LpnPI CCDG 3 cut(s) 185, 377, 431
Lsp1109I GCAGC 4 cut(s) 325, 354, 357, 360
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 32, 101, 113, 285
MboI GATC 4 cut(s) 30, 99, 111, 283
MhlI GDGCHC 1 cut(s) 273
MlyI GAGTC 2 cut(s) 52, 181
MnlI CCTC 7 cut(s) 58, 109, 139, 219, 329, 403, 421
MwoI GCNNNNNNNGC 1 cut(s) 373
NcoI CCATGG 2 cut(s) 210, 423
NdeII GATC 4 cut(s) 30, 99, 111, 283
NlaIII CATG 4 cut(s) 16, 167, 214, 427
NmuCI GTSAC 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 438
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 4 cut(s) 340, 369, 372, 375
PleI GAGTC 2 cut(s) 52, 181
PpsI GAGTC 2 cut(s) 52, 181
Psp124BI GAGCTC 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 2 cut(s) 218, 344
RsaNI GTAC 2 cut(s) 217, 343
SacI GAGCTC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 35
SatI GCNGC 4 cut(s) 339, 368, 371, 374
Sau3AI GATC 4 cut(s) 30, 99, 111, 283
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 2 cut(s) 52, 181
SduI GDGCHC 1 cut(s) 273
SetI ASST 7 cut(s) 47, 69, 186, 198, 234, 255, 273
SmlI CTYRAG 2 cut(s) 62, 272
SmoI CTYRAG 2 cut(s) 62, 272
SsiI CCGC 2 cut(s) 77, 178
SstI GAGCTC 1 cut(s) 273
StyI CCWWGG 2 cut(s) 210, 423
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 20, 114, 357
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 438
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 338, 367, 370, 373
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 161, 383
TspGWI ACGGA 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.