RLG00000024867

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018456
Physical Location & Seq
Forward (+)
39896553 .. 39897153
601 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024867

Sequence Viewer

Length: 486 bp
ATGTCGTCAATGAAGATGATCACTCTGAAGAGCTTGGACGGACGGACTCTTGAGGTGGAAGAAGCGGTGGCAAAGAAGTCGCCTATGATCAAGAAAATGATTGAGGATGAAGACGTGATGCAGGATGAGGTTGATGACGAGGACAACGACAACGTCGTTCATCTCTGGAAGGTGACTTACAAGGTTTTGGACAAGGTCATGGAGTACTGCAAGAGGCACGTTAACGACGACGAGAAGGTGGTCAATGAGGACGAGCTCAAGGCGTGGGACCAAGACTTTATTGTCAAGACTGACAAATCCACCCTCTGCAATCTTCTTCTTGCTGCGTACTACTTGAACATCCAGAGCCTTCTACTCCTGCTATCCAAGAACGCTTTTCACAAGACAGGGCGCTGCTACTCCTGGGAGATTTATTTTCCTCCTTCCTTCTTGCTTTTTGTCTTGGGAGGACTGAGGAGTATAGGGGCCTCATCTCCCCCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

162

Amino Acids

18.58

Weight (kDa)

5.11

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 5 - 75 1.7e-15 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018456)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11010
rosa_chinensis RchiOBHm_Chr3g0462321
rosa_laevigata RLG00000024867
rosa_multiflora Rmu_sc0009800.1_g000001
rosa_roxburghii Rroxscaffold_6G00417590
rosa_rugosa Rorug03G0055800
rosa_samantha Rh3BG117600 Rh3CG120400 Rh3DG119400
rosa_wichuraiana Rw3G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AciI CCGC 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 206, 329
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 2 cut(s) 33, 256
AluI AGCT 2 cut(s) 33, 256
Alw21I GWGCWC 1 cut(s) 258
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 323, 393
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 268, 465
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 310, 380
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 403
BclI TGATCA 2 cut(s) 18, 87
BfaI CTAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 394
BisI GCNGC 2 cut(s) 324, 394
BlsI GCNGC 2 cut(s) 325, 395
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 268
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 268, 465
BmiI GGNNCC 2 cut(s) 269, 466
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 71, 242
BsaJI CCNNGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 3 cut(s) 112, 130, 339
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 2 cut(s) 310, 380
BshFI GGCC 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 258
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 18, 87
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 269, 466
BspQI GCTCTTC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 2 cut(s) 18, 87
Bst2UI CCWGG 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 3 cut(s) 112, 130, 339
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 2 cut(s) 21, 90
BstMBI GATC 2 cut(s) 18, 87
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 310, 380
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 467
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 112, 130, 339
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 268, 465
Csp6I GTAC 2 cut(s) 205, 328
CviAII CATG 1 cut(s) 199
CviJI RGCY 4 cut(s) 33, 256, 348, 467
CviKI_1 RGCY 4 cut(s) 33, 256, 348, 467
CviQI GTAC 2 cut(s) 205, 328
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 20, 89
DpnII GATC 2 cut(s) 18, 87
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 1 cut(s) 202
FaiI YATR 3 cut(s) 86, 200, 461
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 198
FbaI TGATCA 2 cut(s) 18, 87
Fnu4HI GCNGC 2 cut(s) 324, 394
FokI GGATG 3 cut(s) 119, 137, 326
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 324, 394
FspBI CTAG 1 cut(s) 484
GlaI GCGC 1 cut(s) 392
GluI GCNGC 2 cut(s) 324, 394
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 1 cut(s) 467
HhaI GCGC 1 cut(s) 393
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 46
HpaI GTTAAC 1 cut(s) 223
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 5 cut(s) 50, 91, 166, 286, 343
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 3 cut(s) 158, 230, 233
HpyAV CCTTC 5 cut(s) 163, 229, 359, 432, 436
HpyCH4IV ACGT 3 cut(s) 114, 153, 219
HpyCH4V TGCA 3 cut(s) 121, 210, 309
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 3 cut(s) 114, 153, 219
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 1 cut(s) 391
Ksp22I TGATCA 2 cut(s) 18, 87
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 18, 87
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 7 cut(s) 107, 151, 356, 371, 372, 388, 415
Lsp1109I GCAGC 2 cut(s) 310, 380
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 484
MaeII ACGT 3 cut(s) 114, 153, 219
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 20, 89
MboI GATC 2 cut(s) 18, 87
MboII GAAGA 6 cut(s) 25, 40, 71, 122, 305, 308
MhlI GDGCHC 1 cut(s) 258
MlyI GAGTC 1 cut(s) 40
MseI TTAA 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 403
NdeII GATC 2 cut(s) 18, 87
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 269, 466
NmuCI GTSAC 1 cut(s) 172
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 153, 225
PflFI GACNNNGTC 2 cut(s) 152, 194
PkrI GCNGC 2 cut(s) 325, 395
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 269, 466
PspPI GGNCC 2 cut(s) 268, 465
PsyI GACNNNGTC 2 cut(s) 152, 194
RsaI GTAC 2 cut(s) 206, 329
RsaNI GTAC 2 cut(s) 205, 328
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 324, 394
Sau3AI GATC 2 cut(s) 18, 87
Sau96I GGNCC 2 cut(s) 268, 465
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 50, 257
SmoI CTYRAG 2 cut(s) 50, 257
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 484
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 401
TaiI ACGT 3 cut(s) 117, 156, 222
TatI WGTACW 1 cut(s) 204
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 323, 393
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 26, 123, 149
TspGWI ACGGA 2 cut(s) 54, 58
Tth111I GACNNNGTC 2 cut(s) 152, 194
VpaK11BI GGWCC 1 cut(s) 268
XspI CTAG 1 cut(s) 484
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.