modification-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g11010 |
| rosa_chinensis | RchiOBHm_Chr3g0462321 |
| rosa_laevigata | RLG00000024867 |
| rosa_multiflora | Rmu_sc0009800.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00417590 |
| rosa_rugosa | Rorug03G0055800 |
| rosa_samantha | Rh3BG117600 Rh3CG120400 Rh3DG119400 |
| rosa_wichuraiana | Rw3G009670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 71 |
| AfaI | GTAC | 1 cut(s) | 119 |
| AgsI | TTSAA | 1 cut(s) | 127 |
| AluBI | AGCT | 1 cut(s) | 46 |
| AluI | AGCT | 1 cut(s) | 46 |
| Alw21I | GWGCWC | 1 cut(s) | 48 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 139 |
| ApeKI | GCWGC | 1 cut(s) | 113 |
| AspS9I | GGNCC | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| AvaII | GGWCC | 1 cut(s) | 58 |
| BanII | GRGCYC | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 1 cut(s) | 48 |
| BbvI | GCAGC | 1 cut(s) | 100 |
| BisI | GCNGC | 1 cut(s) | 114 |
| BlsI | GCNGC | 1 cut(s) | 115 |
| Bme18I | GGWCC | 1 cut(s) | 58 |
| BmgT120I | GGNCC | 1 cut(s) | 58 |
| BmiI | GGNNCC | 1 cut(s) | 59 |
| BpuEI | CTTGAG | 1 cut(s) | 32 |
| BseGI | GGATG | 1 cut(s) | 129 |
| BseXI | GCAGC | 1 cut(s) | 100 |
| BsiHKAI | GWGCWC | 1 cut(s) | 48 |
| BslFI | GGGAC | 1 cut(s) | 71 |
| BsmFI | GGGAC | 1 cut(s) | 71 |
| Bsp1286I | GDGCHC | 1 cut(s) | 48 |
| BspLI | GGNNCC | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| BstC8I | GCNNGC | 1 cut(s) | 140 |
| BstF5I | GGATG | 1 cut(s) | 129 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 148 |
| BstNSI | RCATGY | 1 cut(s) | 222 |
| BstV1I | GCAGC | 1 cut(s) | 100 |
| BtsCI | GGATG | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 140 |
| CaiI | CAGNNNCTG | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 1 cut(s) | 58 |
| Csp6I | GTAC | 1 cut(s) | 118 |
| CviAII | CATG | 1 cut(s) | 219 |
| CviJI | RGCY | 2 cut(s) | 46, 138 |
| CviKI_1 | RGCY | 2 cut(s) | 46, 138 |
| CviQI | GTAC | 1 cut(s) | 118 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 71 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 71 |
| Ecl136II | GAGCTC | 1 cut(s) | 46 |
| Eco24I | GRGCYC | 1 cut(s) | 48 |
| Eco47I | GGWCC | 1 cut(s) | 58 |
| Eco53kI | GAGCTC | 1 cut(s) | 46 |
| EcoICRI | GAGCTC | 1 cut(s) | 46 |
| EcoT38I | GRGCYC | 1 cut(s) | 48 |
| FaeI | CATG | 1 cut(s) | 222 |
| FaiI | YATR | 2 cut(s) | 203, 220 |
| FaqI | GGGAC | 1 cut(s) | 71 |
| FatI | CATG | 1 cut(s) | 218 |
| Fnu4HI | GCNGC | 1 cut(s) | 114 |
| FokI | GGATG | 1 cut(s) | 116 |
| FriOI | GRGCYC | 1 cut(s) | 48 |
| Fsp4HI | GCNGC | 1 cut(s) | 114 |
| GluI | GCNGC | 1 cut(s) | 114 |
| Hin1II | CATG | 1 cut(s) | 222 |
| HincII | GTYRAC | 2 cut(s) | 6, 224 |
| HindII | GTYRAC | 2 cut(s) | 6, 224 |
| HinfI | GANTC | 1 cut(s) | 207 |
| HpaI | GTTAAC | 1 cut(s) | 6 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 169, 224 |
| Hpy188III | TCNNGA | 2 cut(s) | 76, 133 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 169, 224 |
| HpyAV | CCTTC | 2 cut(s) | 19, 221 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 1 cut(s) | 99 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 148 |
| Hsp92II | CATG | 1 cut(s) | 222 |
| KspAI | GTTAAC | 1 cut(s) | 6 |
| LpnPI | CCDG | 4 cut(s) | 146, 152, 161, 162 |
| Lsp1109I | GCAGC | 1 cut(s) | 100 |
| MboII | GAAGA | 2 cut(s) | 95, 98 |
| MhlI | GDGCHC | 1 cut(s) | 48 |
| MnlI | CCTC | 5 cut(s) | 10, 31, 104, 175, 190 |
| MseI | TTAA | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 148 |
| NlaIII | CATG | 1 cut(s) | 222 |
| NlaIV | GGNNCC | 1 cut(s) | 59 |
| NspI | RCATGY | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 207 |
| PkrI | GCNGC | 1 cut(s) | 115 |
| Psp124BI | GAGCTC | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 1 cut(s) | 59 |
| PspPI | GGNCC | 1 cut(s) | 58 |
| PstNI | CAGNNNCTG | 1 cut(s) | 139 |
| RsaI | GTAC | 1 cut(s) | 119 |
| RsaNI | GTAC | 1 cut(s) | 118 |
| SacI | GAGCTC | 1 cut(s) | 48 |
| SaqAI | TTAA | 1 cut(s) | 5 |
| SatI | GCNGC | 1 cut(s) | 114 |
| Sau96I | GGNCC | 1 cut(s) | 58 |
| SduI | GDGCHC | 1 cut(s) | 48 |
| SetI | ASST | 3 cut(s) | 30, 48, 181 |
| SinI | GGWCC | 1 cut(s) | 58 |
| SmlI | CTYRAG | 1 cut(s) | 47 |
| SmoI | CTYRAG | 1 cut(s) | 47 |
| SstI | GAGCTC | 1 cut(s) | 48 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TfiI | GAWTC | 1 cut(s) | 207 |
| Tru1I | TTAA | 1 cut(s) | 5 |
| Tru9I | TTAA | 1 cut(s) | 5 |
| TseI | GCWGC | 1 cut(s) | 113 |
| VpaK11BI | GGWCC | 1 cut(s) | 58 |
| XceI | RCATGY | 1 cut(s) | 222 |