modification-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g11010 |
| rosa_chinensis | RchiOBHm_Chr3g0462321 |
| rosa_laevigata | RLG00000024867 |
| rosa_multiflora | Rmu_sc0009800.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00417590 |
| rosa_rugosa | Rorug03G0055800 |
| rosa_samantha | Rh3BG117600 Rh3CG120400 Rh3DG119400 |
| rosa_wichuraiana | Rw3G009670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 83 |
| AclWI | GGATC | 1 cut(s) | 78 |
| AfaI | GTAC | 2 cut(s) | 8, 131 |
| AgsI | TTSAA | 1 cut(s) | 139 |
| AjnI | CCWGG | 1 cut(s) | 252 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| Alw21I | GWGCWC | 1 cut(s) | 60 |
| AlwI | GGATC | 1 cut(s) | 78 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 151, 244 |
| ApeKI | GCWGC | 2 cut(s) | 125, 244 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 60 |
| BbvI | GCAGC | 2 cut(s) | 112, 231 |
| BciT130I | CCWGG | 1 cut(s) | 254 |
| BisI | GCNGC | 2 cut(s) | 126, 245 |
| BlsI | GCNGC | 2 cut(s) | 127, 246 |
| BmcAI | AGTACT | 1 cut(s) | 8 |
| Bme1390I | CCNGG | 1 cut(s) | 254 |
| BmiI | GGNNCC | 1 cut(s) | 258 |
| BmrFI | CCNGG | 1 cut(s) | 254 |
| BpuEI | CTTGAG | 1 cut(s) | 44 |
| BseBI | CCWGG | 1 cut(s) | 254 |
| BseGI | GGATG | 1 cut(s) | 141 |
| BseXI | GCAGC | 2 cut(s) | 112, 231 |
| BsiHKAI | GWGCWC | 1 cut(s) | 60 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 258 |
| BspPI | GGATC | 1 cut(s) | 78 |
| BssMI | GATC | 1 cut(s) | 70 |
| Bst2UI | CCWGG | 1 cut(s) | 254 |
| Bst6I | CTCTTC | 1 cut(s) | 267 |
| BstC8I | GCNNGC | 1 cut(s) | 152 |
| BstF5I | GGATG | 1 cut(s) | 141 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 160 |
| BstNI | CCWGG | 1 cut(s) | 254 |
| BstNSI | RCATGY | 2 cut(s) | 23, 234 |
| BstSCI | CCNGG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 2 cut(s) | 112, 231 |
| BtsCI | GGATG | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 1 cut(s) | 152 |
| CaiI | CAGNNNCTG | 2 cut(s) | 151, 244 |
| Csp6I | GTAC | 2 cut(s) | 7, 130 |
| CviAII | CATG | 2 cut(s) | 20, 231 |
| CviJI | RGCY | 2 cut(s) | 58, 150 |
| CviKI_1 | RGCY | 2 cut(s) | 58, 150 |
| CviQI | GTAC | 2 cut(s) | 7, 130 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 83 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 83 |
| Eam1104I | CTCTTC | 1 cut(s) | 267 |
| EarI | CTCTTC | 1 cut(s) | 267 |
| Ecl136II | GAGCTC | 1 cut(s) | 58 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco53kI | GAGCTC | 1 cut(s) | 58 |
| EcoICRI | GAGCTC | 1 cut(s) | 58 |
| EcoRII | CCWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| FaeI | CATG | 2 cut(s) | 23, 234 |
| FaiI | YATR | 3 cut(s) | 21, 215, 232 |
| FatI | CATG | 2 cut(s) | 19, 230 |
| Fnu4HI | GCNGC | 2 cut(s) | 126, 245 |
| FokI | GGATG | 1 cut(s) | 128 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 2 cut(s) | 126, 245 |
| GluI | GCNGC | 2 cut(s) | 126, 245 |
| Hin1II | CATG | 2 cut(s) | 23, 234 |
| HincII | GTYRAC | 2 cut(s) | 25, 236 |
| HindII | GTYRAC | 2 cut(s) | 25, 236 |
| HinfI | GANTC | 1 cut(s) | 219 |
| HpaI | GTTAAC | 1 cut(s) | 25 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 181, 236 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 88, 145 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 181, 236 |
| HpyAV | CCTTC | 3 cut(s) | 31, 233, 276 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 111 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 160 |
| Hsp92II | CATG | 2 cut(s) | 23, 234 |
| KspAI | GTTAAC | 1 cut(s) | 25 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LpnPI | CCDG | 7 cut(s) | 158, 164, 173, 174, 224, 239, 266 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 231 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MboII | GAAGA | 3 cut(s) | 107, 110, 254 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MnlI | CCTC | 8 cut(s) | 9, 22, 43, 116, 187, 202, 270, 280 |
| MroXI | GAANNNNTTC | 1 cut(s) | 261 |
| MseI | TTAA | 1 cut(s) | 24 |
| MspR9I | CCNGG | 1 cut(s) | 254 |
| MvaI | CCWGG | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 160 |
| NdeII | GATC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 23, 234 |
| NlaIV | GGNNCC | 1 cut(s) | 258 |
| NspI | RCATGY | 2 cut(s) | 23, 234 |
| PdmI | GAANNNNTTC | 1 cut(s) | 261 |
| PfeI | GAWTC | 1 cut(s) | 219 |
| PfoI | TCCNGGA | 1 cut(s) | 252 |
| PkrI | GCNGC | 2 cut(s) | 127, 246 |
| Psp124BI | GAGCTC | 1 cut(s) | 60 |
| Psp6I | CCWGG | 1 cut(s) | 252 |
| PspGI | CCWGG | 1 cut(s) | 252 |
| PspN4I | GGNNCC | 1 cut(s) | 258 |
| PstNI | CAGNNNCTG | 2 cut(s) | 151, 244 |
| RsaI | GTAC | 2 cut(s) | 8, 131 |
| RsaNI | GTAC | 2 cut(s) | 7, 130 |
| SacI | GAGCTC | 1 cut(s) | 60 |
| SaqAI | TTAA | 1 cut(s) | 24 |
| SatI | GCNGC | 2 cut(s) | 126, 245 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| ScaI | AGTACT | 1 cut(s) | 8 |
| ScrFI | CCNGG | 1 cut(s) | 254 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 5 cut(s) | 42, 60, 193, 243, 262 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| SstI | GAGCTC | 1 cut(s) | 60 |
| StyD4I | CCNGG | 1 cut(s) | 252 |
| TatI | WGTACW | 1 cut(s) | 6 |
| TfiI | GAWTC | 1 cut(s) | 219 |
| Tru1I | TTAA | 1 cut(s) | 24 |
| Tru9I | TTAA | 1 cut(s) | 24 |
| TseI | GCWGC | 2 cut(s) | 125, 244 |
| XceI | RCATGY | 2 cut(s) | 23, 234 |
| XmnI | GAANNNNTTC | 1 cut(s) | 261 |
| ZrmI | AGTACT | 1 cut(s) | 8 |