Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009800.1

Orthogroup ID

OG0018456

Physical Location & Seq

Genomic Coordinates Forward (+)

6757 .. 7164

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009800.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtcgtcaaagaagatgatcactctgaagagcttggacggacggactcttgaggtggaagaagcggtggcaaagaagtcgcctatgatcaagaaaatgattgaggatgaagacgtgatggaggatgaggttgatgacgaggacaacgacaacgtcgttcatctccggaaggtgactcacaaggttttggacaaggtcatggagtactgcaagaggcatgttaacgaggacgagaaggtggtcaatgaggacgagctcaaggcgtgggaccaagactttattgtcaagactgacaaatccaccctctgcaatcttcttcttgctgcgtactacttgaacgcttttcacaagacaggtgaggatacgacaatggaggatatgcgaatccttctcgcatgtcaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

135

Amino Acids

15.7

Weight (kDa)

4.79

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018456)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11010
rosa_chinensis	RchiOBHm_Chr3g0462321
rosa_laevigata	RLG00000024867
rosa_multiflora	Rmu_sc0009800.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417590
rosa_rugosa	Rorug03G0055800
rosa_samantha	Rh3BG117600 Rh3CG120400 Rh3DG119400
rosa_wichuraiana	Rw3G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	206, 329
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	115
AluBI	AGCT	2 cut(s)	33, 256
AluI	AGCT	2 cut(s)	33, 256
Alw21I	GWGCWC	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	184, 368
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciVI	GTATCC	1 cut(s)	355
BclI	TGATCA	2 cut(s)	18, 87
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	71, 242
BsaWI	WCCGGW	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	165
BseGI	GGATG	2 cut(s)	112, 130
BseXI	GCAGC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	18, 87
BspACI	CCGC	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	23
BssMI	GATC	2 cut(s)	18, 87
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	112, 130
BstKTI	GATC	2 cut(s)	21, 90
BstMBI	GATC	2 cut(s)	18, 87
BstNSI	RCATGY	2 cut(s)	221, 399
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	112, 130
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	205, 328
CviAII	CATG	3 cut(s)	199, 218, 396
CviJI	RGCY	2 cut(s)	33, 256
CviKI_1	RGCY	2 cut(s)	33, 256
CviQI	GTAC	2 cut(s)	205, 328
DpnI	GATC	2 cut(s)	20, 89
DpnII	GATC	2 cut(s)	18, 87
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	3 cut(s)	202, 221, 399
FaiI	YATR	5 cut(s)	86, 200, 219, 380, 397
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	198, 217, 395
FbaI	TGATCA	2 cut(s)	18, 87
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	119, 137
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	3 cut(s)	202, 221, 399
HincII	GTYRAC	2 cut(s)	223, 401
HindII	GTYRAC	2 cut(s)	223, 401
HinfI	GANTC	3 cut(s)	46, 175, 384
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	184, 368
Hpy166II	GTNNAC	2 cut(s)	223, 401
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	4 cut(s)	50, 91, 166, 286
Hpy8I	GTNNAC	2 cut(s)	223, 401
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	163, 229, 398
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	2 cut(s)	114, 153
HpyCH4V	TGCA	2 cut(s)	210, 309
HpySE526I	ACGT	2 cut(s)	114, 153
Hsp92II	CATG	3 cut(s)	202, 221, 399
Kpn2I	TCCGGA	1 cut(s)	165
Ksp22I	TGATCA	2 cut(s)	18, 87
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	18, 87
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	2 cut(s)	179, 339
Lsp1109I	GCAGC	1 cut(s)	310
MaeII	ACGT	2 cut(s)	114, 153
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	20, 89
MboI	GATC	2 cut(s)	18, 87
MboII	GAAGA	6 cut(s)	25, 40, 71, 122, 305, 308
MhlI	GDGCHC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	40, 169
MroI	TCCGGA	1 cut(s)	165
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	18, 87
NlaIII	CATG	3 cut(s)	202, 221, 399
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	2 cut(s)	221, 399
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 153
PfeI	GAWTC	1 cut(s)	384
PflFI	GACNNNGTC	2 cut(s)	152, 194
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	40, 169
PpsI	GAGTC	2 cut(s)	40, 169
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	268
PsyI	GACNNNGTC	2 cut(s)	152, 194
RsaI	GTAC	2 cut(s)	206, 329
RsaNI	GTAC	2 cut(s)	205, 328
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	18, 87
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	2 cut(s)	40, 169
SduI	GDGCHC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	50, 257
SmoI	CTYRAG	2 cut(s)	50, 257
SsiI	CCGC	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	2 cut(s)	117, 156
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	123, 149
TspGWI	ACGGA	2 cut(s)	54, 58
Tth111I	GACNNNGTC	2 cut(s)	152, 194
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	2 cut(s)	221, 399
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.