FvH4_6g12840

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016876
Physical Location & Seq
Reverse (-)
7786073 .. 7787779
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12840.t1

Sequence Viewer

Length: 339 bp
ATGCTGGAAGGAAAAGCTGTTGTGCGCGAAACAGATATGCCAACTCTCATGCAGAGTCATGCCATGGAATTGGCTTACAAGGCTCTTGATCTACATGAAGTTTCTGATTGTCGATCCATTGCTCATTATATCAAGCAGAAATTTGATGAAGCTTATGGTCCCGCCTGGCACTGTGTTGTGGGCAAAGACTTTGGATCTTGCATCACGCATTTGTGCGGAAGTTTCATTTTCTTCCATGTGGAGATGATGGAGTTTCTCATATTCAAAGATGGCACAGACTCTTGTAAAAGCAGGGAAGAGGCTATTGGGGTTCTGCAAAATGGAAGCTTATCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

113

Amino Acids

12.6

Weight (kDa)

5.23

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 3e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12840
malus_domestica MD04G1137700.v1.1 MD12G1152600.v1.1
prunus_persica Prupe.6G263700_v2.0.a1
pyrus_communis pycom04g12610
rosa_chinensis RchiOBHm_Chr3g0464841
rosa_laevigata RLG00000024670
rosa_multiflora Rmu_sc0007114.1_g000005
rosa_roxburghii Rroxscaffold_6G00415400
rosa_rugosa Rorug03G0074300
rosa_samantha Rh3BG137100 Rh3CG139700 Rh3DG138500
rosa_wichuraiana Rw3G011200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AciI CCGC 2 cut(s) 162, 216
AclWI GGATC 2 cut(s) 108, 202
AcsI RAATTY 1 cut(s) 140
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 17, 152, 327
AluI AGCT 3 cut(s) 17, 152, 327
AlwI GGATC 2 cut(s) 108, 202
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BccI CCATC 2 cut(s) 241, 263
BciT130I CCWGG 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 88, 113, 194
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 162, 216
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 108, 202
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 88, 113, 194
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 91, 116, 197
BstMBI GATC 3 cut(s) 88, 113, 194
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 5 cut(s) 49, 59, 64, 95, 236
CviJI RGCY 6 cut(s) 17, 74, 83, 152, 302, 327
CviKI_1 RGCY 6 cut(s) 17, 74, 83, 152, 302, 327
DpnI GATC 3 cut(s) 90, 115, 196
DpnII GATC 3 cut(s) 88, 113, 194
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 5 cut(s) 52, 62, 67, 98, 239
FaiI YATR 9 cut(s) 38, 50, 60, 65, 96, 129, 156, 237, 260
FaqI GGGAC 1 cut(s) 144
FatI CATG 5 cut(s) 48, 58, 63, 94, 235
FauI CCCGC 1 cut(s) 169
GlaI GCGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 52, 62, 67, 98, 239
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 2 cut(s) 150, 325
HinfI GANTC 2 cut(s) 55, 278
Hpy188I TCNGA 2 cut(s) 106, 334
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 52, 201, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 5 cut(s) 52, 62, 67, 98, 239
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 3 cut(s) 88, 113, 194
LpnPI CCDG 3 cut(s) 151, 178, 277
LweI GCATC 1 cut(s) 210
MalI GATC 3 cut(s) 90, 115, 196
MboI GATC 3 cut(s) 88, 113, 194
MboII GAAGA 2 cut(s) 223, 308
MflI RGATCY 1 cut(s) 194
MluCI AATT 2 cut(s) 68, 140
MlyI GAGTC 2 cut(s) 64, 272
MnlI CCTC 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 88, 113, 194
NlaIII CATG 5 cut(s) 52, 62, 67, 98, 239
NlaIV GGNNCC 1 cut(s) 160
PleI GAGTC 2 cut(s) 63, 272
PpsI GAGTC 2 cut(s) 63, 272
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 194
Sau3AI GATC 3 cut(s) 88, 113, 194
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 64, 272
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 19, 154, 329
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 158
Sse9I AATT 2 cut(s) 68, 140
SsiI CCGC 2 cut(s) 162, 216
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 112
TasI AATT 2 cut(s) 68, 140
TscAI CASTG 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 111, 162, 214
TspRI CASTG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.