Rorug03G0074300

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016876
Physical Location & Seq
Reverse (-)
5853314 .. 5853763
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0074300.1

Sequence Viewer

Length: 450 bp
ATGTCTTGCTTAATCCCAAAATCAGATGATAATAAGCTTCCCACATCTTCTAAGAAGGGTTGGAAGCACTTGAGACGTATATTCAAATCCTTCAAGAACAGTGATGACTACTACAACCATTATTATCAATACCATGTTCACTATGATGACTACAAGAAGCAGCAGCGCCGCGGCAGCGGGGCAACCAAATCATCAACAGTTGAAGCACCAATGGTGCATCACCAGGCTGCTGCTGCACGTGCTTTTACCAGTACAAGAGAAAGTGCTCATGTTCATCATCGTAGCAAAAATGAACCTCGGGATCGAAATGCCTTGGGAGATAATGACGAAAATGGGGAGGGTGTTGATGTTGATTGTGAGAAGTTCATAGAGTGGTTCCGCGACGGGTGGAAGCTTGAGAGACAAATTTCTGCTGAAGAGTTTCGCGACATGCTGGATCGAAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

149

Amino Acids

17.5

Weight (kDa)

8.48

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 113 - 147 6.6e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12840
malus_domestica MD04G1137700.v1.1 MD12G1152600.v1.1
prunus_persica Prupe.6G263700_v2.0.a1
pyrus_communis pycom04g12610
rosa_chinensis RchiOBHm_Chr3g0464841
rosa_laevigata RLG00000024670
rosa_multiflora Rmu_sc0007114.1_g000005
rosa_roxburghii Rroxscaffold_6G00415400
rosa_rugosa Rorug03G0074300
rosa_samantha Rh3BG137100 Rh3CG139700 Rh3DG138500
rosa_wichuraiana Rw3G011200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 171, 381, 426
AciI CCGC 4 cut(s) 169, 171, 177, 379
AclWI GGATC 2 cut(s) 309, 444
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 435
AcvI CACGTG 1 cut(s) 239
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 3 cut(s) 85, 94, 203
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 37, 394
AluI AGCT 2 cut(s) 37, 394
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 67, 394
AlwI GGATC 2 cut(s) 309, 444
Ama87I CYCGRG 1 cut(s) 297
ApeKI GCWGC 6 cut(s) 160, 163, 174, 227, 230, 233
ApoI RAATTY 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 297
BbrPI CACGTG 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 67, 394
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
BlsI GCNGC 8 cut(s) 162, 165, 170, 173, 176, 229, 232, 235
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 91, 416
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 169, 296, 312
Bse1I ACTGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 169, 296, 312
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 3 cut(s) 171, 381, 426
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 67, 394
BsmBI CGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 301, 436
Bsp68I TCGCGA 1 cut(s) 426
BspACI CCGC 4 cut(s) 169, 171, 177, 379
BspFNI CGCG 3 cut(s) 171, 381, 426
BspLI GGNNCC 1 cut(s) 377
BspPI GGATC 2 cut(s) 309, 444
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 169, 296, 312
BssMI GATC 2 cut(s) 301, 436
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 101, 199
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 51, 447
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 3 cut(s) 171, 381, 426
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 2 cut(s) 304, 439
BstMAI GTCTC 2 cut(s) 67, 394
BstMBI GATC 2 cut(s) 301, 436
BstMWI GCNNNNNNNGC 3 cut(s) 174, 233, 239
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 3 cut(s) 171, 381, 426
BstV1I GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
BtgI CCRYGG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 106
BtuMI TCGCGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 168
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 134, 269, 430
CviJI RGCY 3 cut(s) 37, 227, 394
CviKI_1 RGCY 3 cut(s) 37, 227, 394
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 2 cut(s) 51, 447
DpnI GATC 2 cut(s) 303, 438
DpnII GATC 2 cut(s) 301, 436
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 435
Eco72I CACGTG 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 3 cut(s) 137, 272, 433
FaiI YATR 6 cut(s) 80, 135, 144, 270, 368, 431
FatI CATG 3 cut(s) 133, 268, 429
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
Fsp4HI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
GlaI GCGC 1 cut(s) 167
GluI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
HaeII RGCGCY 1 cut(s) 169
HhaI GCGC 1 cut(s) 168
Hin1II CATG 3 cut(s) 137, 272, 433
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 35, 392
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 94, 299, 425
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 2 cut(s) 49, 100
HpyCH4III ACNGT 2 cut(s) 101, 199
HpyCH4IV ACGT 2 cut(s) 76, 238
HpyCH4V TGCA 2 cut(s) 217, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 233, 239
HpyF3I CTNAG 2 cut(s) 51, 447
HpySE526I ACGT 2 cut(s) 76, 238
Hsp92II CATG 3 cut(s) 137, 272, 433
HspAI GCGC 1 cut(s) 166
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 301, 436
LpnPI CCDG 4 cut(s) 209, 236, 262, 419
Lsp1109I GCAGC 6 cut(s) 172, 175, 186, 214, 217, 220
LweI GCATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 76, 238
MalI GATC 2 cut(s) 303, 438
MboI GATC 2 cut(s) 301, 436
MboII GAAGA 2 cut(s) 39, 428
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 306, 331
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 171, 177
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 3 cut(s) 171, 381, 426
MwoI GCNNNNNNNGC 3 cut(s) 174, 233, 239
NdeII GATC 2 cut(s) 301, 436
NlaIII CATG 3 cut(s) 137, 272, 433
NlaIV GGNNCC 1 cut(s) 377
NruI TCGCGA 1 cut(s) 426
NspI RCATGY 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 420
PkrI GCNGC 8 cut(s) 162, 165, 170, 173, 176, 229, 232, 235
PmaCI CACGTG 1 cut(s) 239
PmlI CACGTG 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 222
PspCI CACGTG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 377
RruI TCGCGA 1 cut(s) 426
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 144
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 8 cut(s) 161, 164, 169, 172, 175, 228, 231, 234
Sau3AI GATC 2 cut(s) 301, 436
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 268
SetI ASST 5 cut(s) 39, 79, 241, 298, 396
SfaNI GCATC 1 cut(s) 226
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 70, 395
SmoI CTYRAG 2 cut(s) 70, 395
Sse9I AATT 1 cut(s) 405
SsiI CCGC 4 cut(s) 169, 171, 177, 379
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 101, 199
TaiI ACGT 2 cut(s) 79, 241
TaqI TCGA 2 cut(s) 304, 439
TasI AATT 1 cut(s) 405
TatI WGTACW 1 cut(s) 251
TauI GCSGC 2 cut(s) 171, 174
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 106
TseI GCWGC 6 cut(s) 160, 163, 174, 227, 230, 233
TspDTI ATGAA 3 cut(s) 263, 306, 355
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 405
XceI RCATGY 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.