MD04G1137700.v1.1

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0016876
Physical Location & Seq
Forward (+)
22514855 .. 22516414
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1137700.v1.1.491

Sequence Viewer

Length: 345 bp
ATGCTGGAAGGAAAAGCTGAGGTGCGGGAAACAGATATGCCAGATGACATGCAGAGCCATGCCATGGAGTTGGCTTACAAGGCTCTTGATCTCCATGAAGTTTCTGATTTCCGATCCGTTGCTCACTATATCAAACAGAAATTTGATGAAGCATATGGCACTGCCTGGCACTGTGTAGTGGGCAAAAACTTTGGGTCCTGCATCACACATTTGAGTGGAAGTTTCATTTTCTTCCATGTGGAGACGACGGAGTTCCTCGTGTTCAAGGATTGCAAAAACTCCACTGAAAGCAGGGAAGAAGGTATTGGAGTGTTGCAGATTGAAAGCCCAGAAAGTGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

4.79

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 4.1e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12840
malus_domestica MD04G1137700.v1.1 MD12G1152600.v1.1
prunus_persica Prupe.6G263700_v2.0.a1
pyrus_communis pycom04g12610
rosa_chinensis RchiOBHm_Chr3g0464841
rosa_laevigata RLG00000024670
rosa_multiflora Rmu_sc0007114.1_g000005
rosa_roxburghii Rroxscaffold_6G00415400
rosa_rugosa Rorug03G0074300
rosa_samantha Rh3BG137100 Rh3CG139700 Rh3DG138500
rosa_wichuraiana Rw3G011200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 265, 323
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 195
AvaII GGWCC 1 cut(s) 195
BauI CACGAG 1 cut(s) 257
BbvCI CCTCAGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 210, 328
Bpu10I CCTNAGC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 88, 113
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 2 cut(s) 88, 113
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 2 cut(s) 91, 116
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 2 cut(s) 88, 113
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 164
BstXI CCANNNNNNTGG 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 159, 169, 282
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 5 cut(s) 49, 59, 64, 95, 236
CviJI RGCY 5 cut(s) 17, 57, 74, 83, 327
CviKI_1 RGCY 5 cut(s) 17, 57, 74, 83, 327
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 90, 115
DpnII GATC 2 cut(s) 88, 113
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 5 cut(s) 52, 62, 67, 98, 239
FatI CATG 5 cut(s) 48, 58, 63, 94, 235
FauI CCCGC 1 cut(s) 18
FauNDI CATATG 1 cut(s) 154
Hin1II CATG 5 cut(s) 52, 62, 67, 98, 239
Hpy188I TCNGA 2 cut(s) 106, 113
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 5 cut(s) 52, 201, 273, 316, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 5 cut(s) 52, 62, 67, 98, 239
Kzo9I GATC 2 cut(s) 88, 113
LpnPI CCDG 5 cut(s) 54, 151, 178, 211, 277
LweI GCATC 2 cut(s) 210, 328
MalI GATC 2 cut(s) 90, 115
MboI GATC 2 cut(s) 88, 113
MboII GAAGA 2 cut(s) 223, 308
MluCI AATT 1 cut(s) 140
MnlI CCTC 2 cut(s) 13, 266
Mph1103I ATGCAT 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 154
NdeII GATC 2 cut(s) 88, 113
NlaIII CATG 5 cut(s) 52, 62, 67, 98, 239
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 195
PspPPI RGGWCCY 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 213
Sau3AI GATC 2 cut(s) 88, 113
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 19, 24, 304
SfaNI GCATC 2 cut(s) 210, 328
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 1 cut(s) 140
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 173
TasI AATT 1 cut(s) 140
TscAI CASTG 3 cut(s) 166, 176, 289
TspDTI ATGAA 3 cut(s) 111, 162, 214
TspGWI ACGGA 2 cut(s) 106, 263
TspRI CASTG 3 cut(s) 166, 176, 289
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.